A ruler for determining the position of proteins in membranes

Journal of the American Chemical Society

Volumn 127, Issue 17, 2005, Pages 6430-6442

  Nielsen, Robert D ^a   Che, Kepeng ^a   Gelb, Michael H ^a,b   Robinson, Bruce H ^a  

^a UNIVERSITY OF WASHINGTON   (United States)

^b UNIVERSITY OF WASHINGTON SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DIFFUSION; MECHANICAL PERMEABILITY; NEGATIVE IONS; OXYGEN; PROTEINS; SOLUBILITY;

NITROXIDES; PEPTIDES; TRANSMEMBRANES;

BIOLOGICAL MEMBRANES;

AMPHOLYTE; BINDING PROTEIN; NITROXIDE; PROTEIN;

ARTICLE; DIFFUSION COEFFICIENT; ELECTRON SPIN RESONANCE; MEMBRANE; MEMBRANE PERMEABILITY; OXYGEN DIFFUSION; PHOSPHOLIPID MEMBRANE; PROTEIN LOCALIZATION;

CYTOSOL; DIFFUSION; ELECTRON SPIN RESONANCE SPECTROSCOPY; MEMBRANE PROTEINS; MODELS, CHEMICAL; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; OXYGEN; PEPTIDES; PHOSPHOLIPASES A; PHOSPHOLIPIDS; PROTEIN STRUCTURE, SECONDARY; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; SPIN LABELS;

EID: 18244390978     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja042782s     Document Type: Article

References (49)

1. Beers, S. A.; Buckland, A. G.; Giles, N.; Gelb, M. H.; Wilton, D. C. Biochemistry 2003, 42, 7326-7338.
2. Chattopadhyay, A.; London, E. Biochemistry 1987, 26, 39-45.
3. Gambhir, A.; Hangyas-Mihalyne, G.; Zaitseva, I.; Cafiso, D. S.; Wang, J.; Murray, D.; Pentyala, S. N.; Smith, S. O.; McLaughlin, S. Biophys. J. 2004, 86, 2188-2207.
4. Luchette, P. A.; Presser, R. S.; Sanders, C. R. J. Am. Chem. Soc. 2002, 124, 1778-1781.
5. Subczynski, W. K.; Hyde, J. S. Biochim. Biophys. Acta 1981, 643, 283-291.
6. Subczynski, W. K.; Hyde, J. S. Biophys. J. 1984, 45, 743-748.
7. Subczynski, W. K.; Hyde, J. S.; Kusumi, A. Proc. Natl. Acad. Sci. U.S.A. 1989, 86, 4474-4478.
8. Subczynski, W. K.; Hyde, J. S.; Kusumi, A. Biochemistry 1991, 30, 8578-8590.
9. Subczynski, W. K.; Pasenkiewicz-Gierula, M.; McElhaney, R. N.; Hyde, J. S.; Kusumi, A. Biochemistry 2003, 42, 3939-3948.
10. Windrem, D. A.; Plachy, W. Z. Biochim. Biophys. Acta 1980, 600, 655-665.
11. Altenbach, C.; Greenhalgh, D. A.; Khorana, H. G.; Hubbell, W. L. Proc. Natl. Acad. Sci. U.S.A. 1994, 91, 1667-1671.
12. Altenbach, C.; Marti, T.; Khorana, H. G.; Hubbell, W. L. Science 1990, 248, 1088-1092.
13. Dzikovski, B. G.; Livshits, V. A.; Marsh, D. Biophys. J. 2003, 85, 1005-1012.
14. Perozo, E.; Marien Cortes, D.; Cuello, L. G. Nat. Struct. Biol. 1998, 5, 459-469.
15. Killian, J. A. Biochim. Biophys. Acta 1998, 1376, 401-416.
16. de Planque, M. R. R.; Goormaghtigh, E.; Greathouse, D. V.; Koeppe, R. E., II; Kruijtzer, J. A. W.; Liskamp, R. M. J.; de Kruijff, B.; Killian, J. A. Biochemistry 2001, 40, 5000-5010.
17. Killian, J. A.; Salemink, I.; de Planque, M. R. R.; Lindbloom, G.; Koeppe, R. E., II; Greathouse, D. V. Biochemistry 1996, 35, 1037-1045.
18. Hatcher, M. E.; Plachy, W. Z. Biochim. Biophys. Acta 1993, 1149, 73-78.
19. Smirnov, A. I.; Belford, R. L. J. Magn. Reson. 1995, 113, 65-73.
20. Yin, J.-J.; Hyde, J. S. Z. Phys. Chem. Neue Folge 1987, 153, 57-65.
21. Nielsen, R.; Canaan, S.; Gladden, J. A.; Gelb, M. H.; Mailer, C.; Robinson, B. H. J. Magn. Reson. 2004, 169, 129-163.
22. Smirnov, A. I.; CIarkson, R. B.; Belford, R. L. J. Magn. Reson. 1996, B111, 149-157.
23. Hubbell, W. L.; Cafiso, D. S.; Altenbach, C. Nat. Struct. Biol. 2000, 7, 735-739.
24. Columbus, L.; Hubbell, W. L. Trends Biochem. Sci. 2002, 27, 288-295.
25. Robinson, B. H.; Haas, D. A.; Mailer, C. Science 1994, 263, 490-493.
26. Wilhelm, E.; Battinon, R. Chem. Rev. 1973, 73, 1-9.
27. Marrink, S. J.; Berendsen, J. C. J. Phys. Chem. 1996, 100, 16729-16738.
28. Shinoda, W.; Mikami, M.; Baba, T.; Hato, M. J. Phys. Chem. B 2004, 108, 9346-9356.
29. Altenbach, C.; Froncisz, W.; Hubbell, W. L. Biophysical Society 46th Annual Meeting, San Francisco, CA. Biophys. J. San Francisco, CA, 2002; Vol. 82, p 479a.
30. Altenbach, C.; Froncisz, W.; Hyde, J. S.; Hubbell, W. L. Biophys. J. 1989, 56, 1183-1191.
31. Frazier, A. A.; Wisner, M. A.; Malmberg, N. J.; Victor, K. G.; Fanucci, G. E.; Nalefski, E. A.; Falke, J. J.; Cafiso, D. S. Biochemistry 2002, 41, 6282-6292.
32. Hyde, J. S.; Froncisz, W. J. Magn. Reson. 1982, 47, 515-521.
33. Mailer, C.; Robinson, B. H.; Williams, B. B.; Halpern, H. J. Magn. Reson Medcine 2003, 49, 1175-1180.
34. White, S. Biophys. J. 1991, 59, 162-173.
35. White, S. H.; Wimley, W. C. Curr. Opin. Struct. Biol. 1994, 4, 79-86.
36. Demmers, J. A. A.; vanDuijn, E.; Haverkamp, J.; Greathouse, D. V.; Koeppe, R. E., II; Heck, A. J. R.; Killian, J. A. J. Biol. Chem. 2001, 276, 34501-34508.
37. Ball, A.; Nielsen, R.; Gelb, M. H.; Robinson, B. H. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 6637-6642.
38. Lin, Y.; Nielsen, R.; Murray, D.; Hubbell, W. L.; Mailer, C.; Robinson, B. H.; Gelb, M. H. Science 1998, 279, 1925-1929.
39. Percival, P. W.; Hyde, J. S. J. Magn. Reson. 1976, 23, 249-257.
40. Mailer, C.; Nielsen, R. D.; Robinson, B. H. J. Phys. Chem. In press.
41. Andre, J. C.; Bouchy, M.; Donner, M. Biorheology 1987, 24, 237-272.
42. Edidin, M. Annu. Rev. Biophys. Bioeng. 1974, 3, 179-201.
43. Lietzow, M. A.; Hubbell, W. L. Biochemistry 2004, 43, 3137-3151.
44. Barnes, J. P.; Liang, Z.; Mchaorab, H. S.; Freed, J. H.; Hubbell, W. L. Biophys. J. 1999, 76, 3296-3306.
45. Silvius, J. R. Thermotropic Phase Transitions of Pure Lipids in Model Membranes and Their Modifications by Membrane Proteins; John Wiley and Sons: New York, 1982.
46. Killian, J. A. FEBS Lett. 2003, 555, 134-138.
47. Popp, C. A.; Hyde, J. S. J. Magn. Reson. 1981, 43, 249-258.
48. Subczynski, W. K.; Lewis, A. H.; McElhaney, R. N.; Hodges, R. S.; Hyde, J. S.; Kusumi, A. Biochemistry 2001, 40, 12103-12111.
49. Canaan, S.; Nielsen, R.; Ghomashchi, F.; Gelb, M. H.; Robinson, B. H. J. Biol. Chem. 2002, 277, 30984-30990.