The putidaredoxin reductase-putidaredoxin electron transfer complex: Theoretical and experimental studies

Journal of Biological Chemistry

Volumn 280, Issue 16, 2005, Pages 16135-16142

  Kuznetsov, Vadim Yu ^a   Blair, Emet ^a   Farmer, Patrick J ^a   Poulos, Thomas L ^a,b   Pifferitti, Amanda ^a,b   Sevrioukova, Irina F ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; BIOCHEMISTRY; COMPUTER GRAPHICS; CRYSTAL STRUCTURE; ELECTRON TRANSITIONS; INTERFACES (MATERIALS); MUTAGENESIS;

ELECTRON TRANSFER; KINETIC PARAMETERS; MOLECULAR MODELING; REDOX POTENTIAL;

ENZYME KINETICS;

ARGININE; ASPARTIC ACID; CYSTEINE; FLAVINE ADENINE NUCLEOTIDE; IRON; IRON SULFUR PROTEIN; OXIDOREDUCTASE; PUTIDAREDOXIN; QUERCETIN; SULFUR; TYROSINE;

AMINO ACID SUBSTITUTION; ARTICLE; BINDING AFFINITY; CLUSTER ANALYSIS; COMPARATIVE STUDY; COMPLEX FORMATION; COMPUTER GRAPHICS; COMPUTER MODEL; CRYSTAL STRUCTURE; ELECTRON; ELECTRON TRANSPORT; FLOW MEASUREMENT; KINETICS; MOLECULAR MODEL; MUTAGENESIS; MUTATION; NONHUMAN; OXIDATION; OXIDATION REDUCTION REACTION; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN INTERACTION; WILD TYPE;

FERREDOXINS; KINETICS; MODELS, MOLECULAR; MUTATION; NADH, NADPH OXIDOREDUCTASES; OXIDATION-REDUCTION; PROTEIN STRUCTURE, TERTIARY; PSEUDOMONAS PUTIDA;

PSEUDOMONAS; PSEUDOMONAS PUTIDA;

EID: 18144391863     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M500771200     Document Type: Article

References (52)

1. Katagiri, M., Ganguli, B. N., and Gunsalus, I. C. (1968) J. Biol. Chem. 243, 3543-3546
2. Sevrioukova, I. F., and Poulos, T. L. (2002) J. Biol. Chem. 277, 25831-25839
3. Kadkhodayan, S., Coulter, E. D., Maryniak, D. M., Bryson, T. A., and Dawson, J. H. (1995) J. Biol. Chem. 270, 28042-28048
4. Hintz, M. J., Mock, D. M., Peterson, L. L., Tuttle, K., and Peterson, J. A. (1982) J. Biol. Chem. 257, 14324-14332
5. Roome, P. W., and Peterson, J. A. (1988) Arch. Biochem. Biophys. 266, 41-50
6. Sevrioukova, I. F., Hazzard, J. T., Tollin, G., and Poulos, T. L. (2001) Biochemistry 40, 10592-10600
7. Purdy, M. M., Koo, L. S., Ortiz de Montellano, P. R., and Klinman, J. P. (2004) Biochemistry 43, 271-281
8. Sibbesen, O., De Voss, J. J., and Montellano, P. R. O. (1996) J. Biol. Chem. 271, 22462-22469
9. Ivanov, Y. D., Kanaeva, I. P., Karuzina, II, Archakov, A. I., Hoa, G. H., and Sligar, S. G. (2001) Arch. Biochem. Biophys. 391, 255-264
10. Poulos, T. L., Finzel, B. C., Gunsalus, I. C., Wagner, G. C., and Kraut, J. (1985) J. Biol. Chem. 260, 16122-16130
11. Pochapsky, T. C., Ye, X. M., Ratnaswamy, G., and Lyons, T. A. (1994) Biochemistry 33, 6424-6432
12. Geren, L. M., O'Brien, P., Stonehuerner, J., and Millett, F. (1984) J. Biol. Chem. 259, 2155-2160
13. Roome, P. W., Jr., Philley, J. C., and Peterson, J. A. (1983) J. Biol. Chem. 258, 2593-2598
14. Aoki, M., Ishimori, K., and Morishima, I. (1998) Biochim. Biophys. Acta 1386, 168-178
15. Aoki, M., Ishimori, K., Fukada, H., Takahashi, K., and Morishima, I. (1998) Biochim. Biophys. Acta 1384, 180-188
16. Sevrioukova, I. F., Garsia, C., Li, H., Bhaskar, B., and Poulos, T. L. (2003) J. Mol. Biol. 333, 377-392
17. Sevrioukova, I. F., Li, H., and Poulos, T. L. (2004) J. Mol. Biol. 336, 889-902
18. Sevrioukova, I. F. (2005) J. Mol. Biol. 347, 607-621
19. Lowry, O. H., Rosenbrough, N. J., Farr, A. L., and Randall, R. J. (1951) J. Biol. Chem. 193, 265-275
20. Avila, L., Wirtz, M., Bunce, R. A., and Rivera, M. (1999) J. Biol. Inorg. Chem. 4, 664-674
21. Murphy, M. M., O'Dea, J. J., and Osteryoung, J. (1991) Anal. Chem. 63, 2743-2750
22. Vakser, I. A., and Aflalo, C. (1994) Proteins 20, 320-329
23. Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard, M. (1991) Acta Crystallogr. 47, 110-119
24. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., GrosseKunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. 54, 905-921
25. Kurnikov, I. V. (2000) HARLEM Molecular Modeling Package, version 1.0, Department of Chemistry, University of Pittsburgh, Pittsburgh, PA
26. Beratan, D. N., Onuchic, J. N., Winkler, J. R., and Gray, H. B. (1992) Science 258, 1740-1741
27. Page, C. C., Moser, C. C., Chen, X., and Dutton, P. L. (1999) Nature 402, 47-52
28. Nicholls, A., Sharp, K. A., and Honig, B. (1991) Proteins 11, 281-296
29. Kraulis, J. P. (1991) J. Appl. Crystallogr. 24, 946-950
30. Merritt, E. A., and Bacon, D. J. (1997) Methods Enzymol. 277, 505-524
31. DeLano, W. L. (2002) Delano Scientific, San Carlos, CA
32. Karplus, P. A., and Schulz, G. E. (1987) J. Mol. Biol. 195, 701-729
33. Karplus, P. A., and Schulz, G. E. (1989) J. Mol. Biol. 210, 163-180
34. Senda, T., Yamada, T., Sakurai, N., Kubota, M., Nashizaki, T., Masai, T., Fukuda, M., and Mitsui, Y. (2000) J. Mol. Biol. 304, 397-410
35. Dugad, L. B., La Mar, G. N., Band, L., and Bertini, I. (1990) Biochemistry 29, 2263-2271
36. Stayton, P. S., and Sligar, S. G. (1991) Biochemistry 30, 1845-1851
37. Pochapsky, T. C., Jain, N. U., Kuti, M., Lyons, T. A., and Heymont, J. (1999) Biochemistry 38, 4681-4690
38. Holden, M., Mayhew, M., Bunk, D., Roitberg, A., and Vilker, V. (1997) J. Biol. Chem. 272, 21720-21725
39. Aoki, M., Ishimori, K., and Morishima, I. (1998) Biochim. Biophys. Acta 1386, 157-167
40. Gunsalus, I. C., and Wagner, G. C. (1978) Methods Enzymol. 52, 166-188
41. Mo, H., Pochapsky, S. S., and Pochapsky, T. C. (1999) Biochemistry 38, 5666-5675
42. Jung, Y. S., Gao-Sheridan, H. S., Christiansen, J., Dean, D. R., and Burgess, B. K. (1999) J. Biol. Chem. 274, 32402-32410
43. Cambillau, C., Frey, M., Mosse, J., Guerlesquin, F., and Bruschi, M. (1988) Proteins 4, 63-70
44. Pochapsky, T. C., Lyons, T. A., Kazanis, S., Arakaki, T., and Ratnaswamy, G. (1996) Biochimie (Paris) 78, 723-733
45. Xia, Z. X., Dai, W. W., He, Y. N., White, S. A., Mathews, F. S., and Davidson, V. L. (2003) J. Biol. Inorg. Chem. 8, 843-854
46. Teixeira, V. H., Baptista, A. M., and Soares, C. M. (2004) Biophys. J. 86, 2773-2785
47. Sligar, S. G., Debrunner, P. G., Lipscomb, J. D., Namtvedt, M. J., and Gunsalus, I. C. (1974) Proc. Natl. Acad. Sci. U. S. A. 71, 3906-3910
48. Davies, M. D., Qin, L., Beck, J. L., Suslick, K. S., Koga, H., Horiuchi, T., and Sugar, S. G. (1990) J. Am. Chem. Soc. 112, 7396-7398
49. Geren, L., Tuls, J., O'Brien, P., Millett, F., and Peterson, J. A. (1986) J. Biol. Chem. 261, 15491-15495
50. Morales, R., Charon, M.-H., Kachalova, G., Serre, L., Medina, M., Gomez-Moreno, C., and Frey, M. (2000) EMBO Rep. 1, 271-276
51. Muller, J. J., Lapko, A., Bourenkov, G., Ruckpaul, K., and Heinemann, U. (2001) J. Biol. Chem. 276, 2786-2789
52. Iverson, T. M., Luna-Chavez, C., Cecchini, G., and Rees, D. C. (1999) Science 284, 1961-1966