A refined model for the solution structure of oxidized putidaredoxin

Biochemistry

Volumn 38, Issue 15, 1999, Pages 4681-4690

  Pochapsky, Thomas C ^a   Jain, Nitin U ^a   Kuti, Miklos ^a   Lyons, Teresa A ^a   Heymont, Jennifer ^a  

^a BRANDEIS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOCHROME P450; FERREDOXIN; PUTIDAREDOXIN; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; CATALYSIS; CRYSTAL STRUCTURE; ELECTRON TRANSPORT; MOLECULAR DYNAMICS; MOLECULAR MODEL; NUCLEAR OVERHAUSER EFFECT; PRIORITY JOURNAL; PROTEIN CONFORMATION;

CARBON ISOTOPES; FERREDOXINS; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; PROTEIN STRUCTURE, SECONDARY; PROTONS; SOLUTIONS;

BOVINAE;

EID: 0033551171     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi983030b     Document Type: Article

References (54)

1. Cushman, D. W., Tsai, R. L., and Gunsalus, I. C. (1967) Biochem. Biophys. Res. Commun. 26, 577-583.
2. Lipscomb, J. D., Sligar, S. G., Namtvedt, M. J., and Gunsalus, I. C. (1976) J. Biol. Chem. 251, 1116-1124.
3. Stayton, P. S., Poulos, T. L., and Sligar, S. G. (1989) Biochemistry 28, 8201-8205.
4. Roitberg, A. E., Holden, M. J., Mayhew, M. P., Kurnikov, I. V., Beratan, D. N., and Vilker, V. L. (1998) J. Am. Chem. Soc. 120, 8927-8932.
5. Pochapsky, T. C., Ye, X. M., Ratnaswamy, G., and Lyons, T. A. (1994) Biochemistry 33, 6424-6432.
6. Ye, X. M., Pochapsky, T. C., and Pochapsky, S. S. (1992) Biochemistry 31, 1961-1968.
7. Rypniewski, W. R., Breiter, D. R., Benning, M. M., Wesenberg, G., Oh, B.-H., Markley, J. L., Rayment, I., and Holden, H. M. (1991) Biochemistry 30, 4126-4131.
8. Kazanis, S., Pochapsky, T. C., Barnhart, T. M., Penner-Hahn, J. E., Mirza, U. A., and Chait, B. T. (1995) J. Am. Chem. Soc. 117, 337-346.
9. Kazanis, S., and Pochapsky, T. C. (1997) J. Biomol. NMR 9, 337-346.
10. Pochapsky, T. C., Kuti, M., and Kazanis, S. (1998) J. Biomol. NMR 12, 407-415.
11. Müller, A., Müller, J. J., Muller, Y. A., Uhlmann, H., Bernhardt, R., and Heinemann, U. (1998) Structure 6, 269-280.
12. Lyons, T. A., Ratnaswamy, G., and Pochapsky, T. C. (1996) Protein Sci. 5, 627-639.
13. Neri, D., Otting, G., and Wuthrich, K. (1990) Tetrahedron 46, 3287-3296.
14. Bax, A., and Subramanian, S. (1986) J. Magn. Reson. 67, 565-569.
15. Shaka, A. J., Barker, P. B., and Freeman, R. (1985) J. Magn. Reson. 52, 335-338.
16. Shaka, A. J., Keeler, J., Frenkiel, T., and Freeman, R. (1983) J. Magn. Reson. 64, 335-338.
17. Grzesiek, S., and Bax, A. (1992) J. Magn. Reson. 96, 432-440.
18. Kay, L. E., Xu, G. Y., and Yamazaki, T. (1994) J. Magn. Reson., Ser. A 109, 129-133.
19. Vuister, G. W., and Bax, A. (1992) J. Magn. Reson. 98, 428-433.
20. Bax, A., Clore, G. M., and Gronenborn, A. (1990) J. Magn. Reson. 88, 425-431.
21. Shaka, A. J., Lee, C. J., and Pines, A. (1988) J. Magn. Reson. 77, 547-552.
22. Bodenhausen, G., and Reuben, D. J. (1980) Chem. Phys. Lett. 69, 185-188.
23. Piotto, M., Saudek, V., and Sklenar, V. (1992) J. Biomol. NMR 2, 661-665.
24. Neri, D., Szyperski, T., Otting, G., Senn, H., and Wuthrich, K. (1989) Biochemistry 28, 7510-7516.
25. Archer, S. J., Ikura, M., Torchia, D. A., and Bax, A. (1991) J. Magn. Reson. 95, 636-641.
26. Neri, D., Otting, G., and Wuthrich, K. (1990) J. Am. Chem. Soc. 112, 3663-3665.
27. Grzesiek, S., and Bax, A. (1997) J. Biomol NMR 9, 207-211.
28. Nilges, M., Clore, G. M., and Gronenborn, A. (1988) FEBS Lett. 239, 317-324.
29. Mayerle, J. J., Denmark, S. E., DePamphilis, B. V., Ibers, J. A., and Holm, R. H. (1975) J. Am. Chem. Soc. 97, 1032-1045.
30. Laskowski, R. A., Rullmann, J. A., MacArthur, M. W., Kaptein, R., and Thornton, J. M. (1996) J. Biomol. NMR 8, 477-486.
31. Beckert, V., Schrauber, H., Bernardt, R., Van Dijk, A. A., Kakoschke, C., and Wray, V. (1995) Eur. J. Biochem. 231, 226-235.
32. Uhlmann, H., and Bernhardt, R. (1995) J. Biol. Chem. 272, 4883-4888.
33. Burova, T. V., Beckert, V., Uhlmann, H., Ristau, O., Bernhardt, R., and Pfeil, W. (1996) Protein Sci. 5, 1890-1897.
34. Holden, M., Mayhew, M., Bunk, D., Roitberg, A., and Vilker, V. (1997) J. Biol. Chem. 272, 21720-21725.
35. Aoki, M., Ishimori, K., Morishima, A., and Wada, Y. (1998) Inorg. Chim. Acta 272, 80-88.
36. Pochapsky, T. C., Lyons, T. A., Kazanis, S., Arakaki, T., and Ratnaswamy, G. (1996) Biochimie 78, 723-733.
37. Vidakovic, M., and Germanas, J. P. (1996) Protein Sci. 5, 1793-1799.
38. Unno, M., Christian, J. F., Benson, D. E., Gerber, N. C., Sligar, S. G., and Champion, P. M. (1997) J. Am. Chem. Soc. 119, 6614-6620.
39. Reipa, V., Mayhew, M. P., and Vilker, V. L. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 13554-13558.
40. Roitberg, A. E. (1997) Biophys. J. 73, 2138-2148.
41. Vo, E., Wang, H. C., and Germanas, J. P. (1997) J. Am. Chem. Soc. 119, 1934-1940.
42. Pochapsky, T. C., Ratnaswamy, G., and Patera, A. (1994) Biochemistry 33, 6433-6441.
43. Geren, L. M., Tuls, J., O'Brien, P., Millett, F., and Peterson, J. A. (1986) J. Biol. Chem. 261, 15491-15495.
44. Sligar, S. G., Debrunner, P. G., Lipscomb, J. D., Namtvedt, M. J., and Gunsalus, I. C. (1974) Proc. Natl. Acad. Sci. U.S.A. 71, 3906-3910.
45. Davies, M. D., and Sligar, S. G. (1992) Biochemistry 31, 11383-11389.
46. Orme-Johnson, N. R., Mims, W. B., Orme-Johnson, W. H., Bartsch, R. G., Cusanovich, M. A., and Peisach, J. (1983) Biochim. Biophys. Acta 748, 68-72.
47. Xia, B., Volkman, B. F., and Markley, J. L. (1998) Biochemistry 37, 3965-3973.
48. Pochapsky, T. C., Arakaki, T., Jain, N., Kazanis, S., Lyons, T. A., Mo, H. Ratnaswamy, G., and Ye, X. (1998) J. Biomol. Struct. Dyn. 16, 79-89.
49. Jain, N. U., and Pochapsky, T. C. (1998) J. Am. Chem. Soc. 120, 12984-12985.
50. Coxon, B., Sari, N., Holden, M. J., and Vilker, V. L. (1997) Magn. Reson. Chem. 35, 743-751.
51. Baumann, B., Sticht, H., Scharpf, M., Sutter, M., Haehnel, W., and Rosch, P. (1996) Biochemistry 35, 12831-12841.
52. Hatanaka, H., Tanimura, R., Katoh, S., and Inagaki, F. (1997) J. Mol. Biol. 268, 922-933.
53. Lelong, C., Setif, P., Bottin, H., Andre, F., and Neumann, J.-M. (1995) Biochemistry 34, 14462-14473.
54. Kraulis, P. J. (1991) J. Appl. Crystallogr. 24, 946-950.