-
1
-
-
0242485317
-
Gene microarray study corroborates proteomic findings in rodent islet cells
-
Cardozo, A. K., Berthou, L., Kruhoffer, M., Orntoft, T., Nicolls, M. R., and Eizirik, D. L. (2003) Gene microarray study corroborates proteomic findings in rodent islet cells. J. Proteome Res. 2, 553-555
-
(2003)
J. Proteome Res.
, vol.2
, pp. 553-555
-
-
Cardozo, A.K.1
Berthou, L.2
Kruhoffer, M.3
Orntoft, T.4
Nicolls, M.R.5
Eizirik, D.L.6
-
2
-
-
4344667121
-
Gene expression profiling of cultured human islet preparations
-
Hui, H., Wang, C., Li, H., Bulotta, A., D'Amico, E., Khoury, N., Nguyen, E., Di Mario, U., Chen, I. Y., and Perfetti, R. (2004) Gene expression profiling of cultured human islet preparations. Diabetes Technol. Ther. 6, 481-492
-
(2004)
Diabetes Technol. Ther.
, vol.6
, pp. 481-492
-
-
Hui, H.1
Wang, C.2
Li, H.3
Bulotta, A.4
D'Amico, E.5
Khoury, N.6
Nguyen, E.7
Di Mario, U.8
Chen, I.Y.9
Perfetti, R.10
-
3
-
-
14144256749
-
Differentiation phenotypes of pancreatic islet β- and α-cells are closely related with homeotic genes and a group of differentially expressed genes
-
Mizusawa, N., Hasegawa, T., Ohigashi, I., Tanaka-Kosugi, C., Harada, N., Itakura, M., and Yoshimoto, K. (2004) Differentiation phenotypes of pancreatic islet β- and α-cells are closely related with homeotic genes and a group of differentially expressed genes. Gene 331, 53-63
-
(2004)
Gene
, vol.331
, pp. 53-63
-
-
Mizusawa, N.1
Hasegawa, T.2
Ohigashi, I.3
Tanaka-Kosugi, C.4
Harada, N.5
Itakura, M.6
Yoshimoto, K.7
-
4
-
-
0036720558
-
Oligonucleotide microarray analysis of intact human pancreatic islets: Identification of glucose-responsive genes and a highly regulated TGFβ signaling pathway
-
Shalev, A., Pise-Masison, C. A., Radonovich, M., Hoffmann, S. C., Hirshberg, B., Brady, J. N., and Harlan, D. M. (2002) Oligonucleotide microarray analysis of intact human pancreatic islets: Identification of glucose-responsive genes and a highly regulated TGFβ signaling pathway. Endocrinology 143, 3695-3698
-
(2002)
Endocrinology
, vol.143
, pp. 3695-3698
-
-
Shalev, A.1
Pise-Masison, C.A.2
Radonovich, M.3
Hoffmann, S.C.4
Hirshberg, B.5
Brady, J.N.6
Harlan, D.M.7
-
5
-
-
0242300119
-
Contrasting patterns of expression of transcription factors in pancreatic alpha and beta cells
-
Wang, J., Webb, G., Cao, Y., and Steiner, D. F. (2003) Contrasting patterns of expression of transcription factors in pancreatic alpha and beta cells. Proc. Natl. Acad. Sci. U. S. A. 100, 12660-12665
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 12660-12665
-
-
Wang, J.1
Webb, G.2
Cao, Y.3
Steiner, D.F.4
-
6
-
-
11144223750
-
Pdx-1 is not sufficient for repression of proglucagon gene transcription in islet or enteroendocrine cells
-
Flock, G., Cao, X., and Drucker, D. J. (2005) Pdx-1 is not sufficient for repression of proglucagon gene transcription in islet or enteroendocrine cells. Endocrinology 146, 441-449
-
(2005)
Endocrinology
, vol.146
, pp. 441-449
-
-
Flock, G.1
Cao, X.2
Drucker, D.J.3
-
7
-
-
0036795454
-
Pax-2 activates the proglucagon gene promoter but is not essential for proglucagon gene expression or development of proglucagon-producing cell lineages in the murine pancreas or intestine
-
Flock, G., and Drucker, D. J. (2002) Pax-2 activates the proglucagon gene promoter but is not essential for proglucagon gene expression or development of proglucagon-producing cell lineages in the murine pancreas or intestine. Mol. Endocrinol. 16, 2349-2359
-
(2002)
Mol. Endocrinol.
, vol.16
, pp. 2349-2359
-
-
Flock, G.1
Drucker, D.J.2
-
8
-
-
0032698718
-
Divergent regulation of human and rat proglucagon gene promoters in vivo
-
Nian, M., Drucker, D. J., and Irwin, D. (1999) Divergent regulation of human and rat proglucagon gene promoters in vivo. Am. J. Physiol. 277, G829-G837
-
(1999)
Am. J. Physiol.
, vol.277
-
-
Nian, M.1
Drucker, D.J.2
Irwin, D.3
-
9
-
-
0029826459
-
The caudal-related homeodomain protein Cdx-2/3 regulates glucagon gene expression in islet cells
-
Laser, B., Meda, P., Constant, I., and Philippe, J. (1996) The caudal-related homeodomain protein Cdx-2/3 regulates glucagon gene expression in islet cells. J. Biol. Chem. 271, 28984-28994
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 28984-28994
-
-
Laser, B.1
Meda, P.2
Constant, I.3
Philippe, J.4
-
10
-
-
0034693046
-
The paired homeodomain transcription factor Pax-2 is expressed in the endocrine pancreas and transactivates the glucagon gene promoter
-
Ritz-Laser, B., Estreicher, A., Gauthier, B., and Philippe, J. (2000) The paired homeodomain transcription factor Pax-2 is expressed in the endocrine pancreas and transactivates the glucagon gene promoter. J. Biol. Chem. 275, 32708-32715
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 32708-32715
-
-
Ritz-Laser, B.1
Estreicher, A.2
Gauthier, B.3
Philippe, J.4
-
11
-
-
0025349639
-
Proglucagon processing similar to normal islets in pancreatic α-like cell line derived from transgenic mouse tumor
-
Powers, A. C., Efrat, S., Mojsov, S., Spector, D., Habener, J. F., and Hanahan, D. (1990) Proglucagon processing similar to normal islets in pancreatic α-like cell line derived from transgenic mouse tumor. Diabetes 39, 406-414
-
(1990)
Diabetes
, vol.39
, pp. 406-414
-
-
Powers, A.C.1
Efrat, S.2
Mojsov, S.3
Spector, D.4
Habener, J.F.5
Hanahan, D.6
-
12
-
-
84984932472
-
Exploring the new world of the genome with DNA microarrays
-
Brown, P. O., and Botstein, D. (1999) Exploring the new world of the genome with DNA microarrays. Nat Genetics 21, (suppl.) 33-37
-
(1999)
Nat. Genetics
, vol.21
, Issue.SUPPL.
, pp. 33-37
-
-
Brown, P.O.1
Botstein, D.2
-
13
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena, M., Shalon, D., Davis, R. W., and Brown, P. O. (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270, 467-470
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
14
-
-
84984934354
-
Molecular interactions on microarrays
-
Southern, E., Mir, K., and Shchepinov, M. (1999) Molecular interactions on microarrays. Nat Genet. 21, 5-9
-
(1999)
Nat. Genet.
, vol.21
, pp. 5-9
-
-
Southern, E.1
Mir, K.2
Shchepinov, M.3
-
15
-
-
84984933234
-
High density synthetic oligonucleotide arrays
-
Lipshutz, R. J., Fodor, S. P., Gingeras, T. R., and Lockhart, D. J. (1999) High density synthetic oligonucleotide arrays. Nat. Genet. 21, 20-24
-
(1999)
Nat. Genet.
, vol.21
, pp. 20-24
-
-
Lipshutz, R.J.1
Fodor, S.P.2
Gingeras, T.R.3
Lockhart, D.J.4
-
16
-
-
0035072249
-
Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer
-
Hughes, T. R., Mao, M., Jones, A. R., Burchard, J., Marton, M. J., Shannon, K. W., Lefkowitz, S. M., Ziman, M., Schelter, J. M., Meyer, M. R., Kobayashi, S., Davis, C., Dai, H., He, Y. D., Stephaniants, S. B., Cavet, G., Walker, W. L., West, A., Coffey, E., Shoemaker, D. D., Stoughton, R., Blanchard, A. P., Friend, S. H., and Linsley, P. S. (2001) Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer. Nat. Biotechnol. 19, 342-347
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 342-347
-
-
Hughes, T.R.1
Mao, M.2
Jones, A.R.3
Burchard, J.4
Marton, M.J.5
Shannon, K.W.6
Lefkowitz, S.M.7
Ziman, M.8
Schelter, J.M.9
Meyer, M.R.10
Kobayashi, S.11
Davis, C.12
Dai, H.13
He, Y.D.14
Stephaniants, S.B.15
Cavet, G.16
Walker, W.L.17
West, A.18
Coffey, E.19
Shoemaker, D.D.20
Stoughton, R.21
Blanchard, A.P.22
Friend, S.H.23
Linsley, P.S.24
more..
-
17
-
-
0041967390
-
Fluorescence-based fibre optic arrays: A universal platform for sensing
-
Epstein, J. R., and Walt, D. R. (2003) Fluorescence-based fibre optic arrays: A universal platform for sensing. Chem. Soc. Rev. 32, 203-214
-
(2003)
Chem. Soc. Rev.
, vol.32
, pp. 203-214
-
-
Epstein, J.R.1
Walt, D.R.2
-
20
-
-
12344280017
-
Summaries of Affymetrix GeneChip probe level data
-
Irizarry, R. A., Bolstad, B. M., Collin, F., Cope, L. M., Hobbs, B., and Speed, T. P. (2003) Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res. 31, e15
-
(2003)
Nucleic Acids Res.
, vol.31
-
-
Irizarry, R.A.1
Bolstad, B.M.2
Collin, F.3
Cope, L.M.4
Hobbs, B.5
Speed, T.P.6
-
21
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry, R. A., Hobbs, B., Collin, F., Beazer-Barclay, Y. D., Antonellis, K. J., Scherf, U., and Speed, T. P. (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4, 249-264
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.P.7
-
22
-
-
1342330572
-
A benchmark for Affymetrix GeneChip expression measures
-
Cope, L. M., Irizarry, R. A., Jaffee, H. A., Wu, Z., and Speed, T. P. (2004) A benchmark for Affymetrix GeneChip expression measures. Bioinformatics 20, 323-331
-
(2004)
Bioinformatics
, vol.20
, pp. 323-331
-
-
Cope, L.M.1
Irizarry, R.A.2
Jaffee, H.A.3
Wu, Z.4
Speed, T.P.5
-
23
-
-
0038745614
-
Integrating biological databases
-
Stein, L. D. (2003) Integrating biological databases. Nat. Rev. Genet. 4, 337-345
-
(2003)
Nat. Rev. Genet.
, vol.4
, pp. 337-345
-
-
Stein, L.D.1
-
24
-
-
0036898577
-
Microarray data normalization and transformation
-
Quackenbush, J. (2002) Microarray data normalization and transformation. Nat. Genet. 32, (suppl.) 496-501
-
(2002)
Nat. Genet.
, vol.32
, Issue.SUPPL.
, pp. 496-501
-
-
Quackenbush, J.1
-
25
-
-
3242786468
-
Universal RNA reference materials for gene expression
-
Cronin, M., Ghosh, K., Sistare, F., Quackenbush, J., Vilker, V., and O'Connell, C. (2004) Universal RNA reference materials for gene expression. Clin. Chem. 50, 1464-1471
-
(2004)
Clin. Chem.
, vol.50
, pp. 1464-1471
-
-
Cronin, M.1
Ghosh, K.2
Sistare, F.3
Quackenbush, J.4
Vilker, V.5
O'Connell, C.6
-
26
-
-
0034862548
-
Maximum-likelihood estimation of optimal scaling factors for expression array normalization
-
Hartemink, A. J., Gifford, D. K., Jaakkola, T. S., and Young, R. A. (2001) Maximum-likelihood estimation of optimal scaling factors for expression array normalization. Proc. SPIE, Microarrays: Optical Technologies and Informatics 4266, 132-140
-
(2001)
Proc. SPIE, Microarrays: Optical Technologies and Informatics
, vol.4266
, pp. 132-140
-
-
Hartemink, A.J.1
Gifford, D.K.2
Jaakkola, T.S.3
Young, R.A.4
-
27
-
-
0036900267
-
Options available - From start to finish - For obtaining data from DNA microarrays II
-
Holloway, A. J., van Laar, R. K., Tothill, R. W., and Bowtell, D. D. (2002) Options available - from start to finish - for obtaining data from DNA microarrays II. Nat. Genet. 32, (suppl.) 481-489
-
(2002)
Nat. Genet.
, vol.32
, Issue.SUPPL.
, pp. 481-489
-
-
Holloway, A.J.1
van Laar, R.K.2
Tothill, R.W.3
Bowtell, D.D.4
-
28
-
-
14844364789
-
Post-analysis follow-up and validation of microarray experiments
-
Chuaqui, R. F., Bonner, R. F., Best, C. J., Gillespie, J. W., Flaig, M. J., Hewitt, S. M., Phillips, J. L., Krizman, D. B., Tangrea, M. A., Ahram, M., Linehan, W. M., Knezevic, V., and Emmert-Buck, M. R. (2002) Post-analysis follow-up and validation of microarray experiments. Nat. Genet. 32, (suppl.) 509-514
-
(2002)
Nat. Genet.
, vol.32
, Issue.SUPPL.
, pp. 509-514
-
-
Chuaqui, R.F.1
Bonner, R.F.2
Best, C.J.3
Gillespie, J.W.4
Flaig, M.J.5
Hewitt, S.M.6
Phillips, J.L.7
Krizman, D.B.8
Tangrea, M.A.9
Ahram, M.10
Linehan, W.M.11
Knezevic, V.12
Emmert-Buck, M.R.13
-
29
-
-
13844275287
-
Microarray data mining with visual programming
-
Curk, T., Demsar, J., Xu, Q., Leban, G., Petrovic, U., Bratko, I., Shaulsky, G., and Zupan, B. (2005) Microarray data mining with visual programming. Bioinformatics 21, 396-398
-
(2005)
Bioinformatics
, vol.21
, pp. 396-398
-
-
Curk, T.1
Demsar, J.2
Xu, Q.3
Leban, G.4
Petrovic, U.5
Bratko, I.6
Shaulsky, G.7
Zupan, B.8
-
30
-
-
7244250182
-
Data mining in bioinformatics using Weka
-
Frank, E., Hall, M., Trigg, L., Holmes, G., and Witten, I. H. (2004) Data mining in bioinformatics using Weka. Bioinformatics 20, 2479-2481
-
(2004)
Bioinformatics
, vol.20
, pp. 2479-2481
-
-
Frank, E.1
Hall, M.2
Trigg, L.3
Holmes, G.4
Witten, I.H.5
-
31
-
-
0345327603
-
MGraph: Graphical models for microarray data analysis
-
Wang, J., Myklebost, O., and Hovig, E. (2003) MGraph: Graphical models for microarray data analysis. Bioinformatics 19, 2210-2211
-
(2003)
Bioinformatics
, vol.19
, pp. 2210-2211
-
-
Wang, J.1
Myklebost, O.2
Hovig, E.3
-
32
-
-
11244346557
-
Variance stabilization applied to microarray data calibration and to the quantification of differential expression
-
Huber, W., von Heydebreck, A., Sultmann, H., Poustka, A., and Vingron, M. (2002) Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics 18, (Suppl. 1) S96-S104
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Huber, W.1
von Heydebreck, A.2
Sultmann, H.3
Poustka, A.4
Vingron, M.5
-
33
-
-
0035793042
-
Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
-
Li, C., and Wong, W. H. (2001) Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection. Proc. Natl. Acad. Sci. U. S. A. 98, 31-36
-
(2001)
Proc. Natl. Acad. Sci. U. S. A.
, vol.98
, pp. 31-36
-
-
Li, C.1
Wong, W.H.2
-
34
-
-
2442601878
-
-
Johns Hopkins University, Department of Biostatistics Working Papers, Baltimore, MD
-
Wu, Z., Irizarry, R. A., Gentleman, R., Murillo, F. M., and Spencer, F. (2003) A Model Based Background Adjustement for Oligonucleotide Expression Arrays, Johns Hopkins University, Department of Biostatistics Working Papers, Baltimore, MD
-
(2003)
A Model Based Background Adjustement for Oligonucleotide Expression Arrays
-
-
Wu, Z.1
Irizarry, R.A.2
Gentleman, R.3
Murillo, F.M.4
Spencer, F.5
-
35
-
-
0037336331
-
Open source software for the analysis of microarray data
-
Dudoit, S., Gentleman, R. C., and Quackenbush, J. (2003) Open source software for the analysis of microarray data. BioTechniques, (suppl.) 45-51
-
(2003)
BioTechniques
, Issue.SUPPL.
, pp. 45-51
-
-
Dudoit, S.1
Gentleman, R.C.2
Quackenbush, J.3
-
36
-
-
0035375137
-
Computational analysis of microarray data
-
Quackenbush, J. (2001) Computational analysis of microarray data. Nat. Rev. Genet. 2, 418-427
-
(2001)
Nat. Rev. Genet.
, vol.2
, pp. 418-427
-
-
Quackenbush, J.1
-
37
-
-
10744224439
-
Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria
-
Mootha, V. K., Bunkenborg, J., Olsen, J. V., Hjerrild, M., Wisniewski, J. R., Stahl, E., Bolouri, M. S., Ray, H. N., Sihag, S., Kamal, M., Patterson, N., Lander, E. S., and Mann, M. (2003) Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Cell 115, 629-640
-
(2003)
Cell
, vol.115
, pp. 629-640
-
-
Mootha, V.K.1
Bunkenborg, J.2
Olsen, J.V.3
Hjerrild, M.4
Wisniewski, J.R.5
Stahl, E.6
Bolouri, M.S.7
Ray, H.N.8
Sihag, S.9
Kamal, M.10
Patterson, N.11
Lander, E.S.12
Mann, M.13
-
38
-
-
0037435030
-
Mass spectrometry-based proteomics
-
Aebersold, R., and Mann, M. (2003) Mass spectrometry-based proteomics. Nature 422, 198-207
-
(2003)
Nature
, vol.422
, pp. 198-207
-
-
Aebersold, R.1
Mann, M.2
-
39
-
-
0141613681
-
Going global: Protein expression profiling using shotgun mass spectrometry
-
Kislinger, T., and Emili, A. (2003) Going global: Protein expression profiling using shotgun mass spectrometry. Curr. Opin. Mol. Ther. 5, 285-293
-
(2003)
Curr. Opin. Mol. Ther.
, vol.5
, pp. 285-293
-
-
Kislinger, T.1
Emili, A.2
-
40
-
-
0036535357
-
Analysis of quantitative proteomic data generated via multidimensional protein identification technology
-
Washburn, M. P., Ulaszek, R., Deciu, C., Schieltz, D. M., and Yates, J. R., 3rd. (2002) Analysis of quantitative proteomic data generated via multidimensional protein identification technology. Anal. Chem. 74, 1650-1657
-
(2002)
Anal. Chem.
, vol.74
, pp. 1650-1657
-
-
Washburn, M.P.1
Ulaszek, R.2
Deciu, C.3
Schieltz, D.M.4
Yates III, J.R.5
-
41
-
-
0035106351
-
Large-scale analysis of the yeast proteome by multidimensional protein identification technology
-
Washburn, M. P., Wolters, D., and Yates, J. R., 3rd (2001) Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol. 19, 242-247
-
(2001)
Nat. Biotechnol.
, vol.19
, pp. 242-247
-
-
Washburn, M.P.1
Wolters, D.2
Yates III, J.R.3
-
42
-
-
1442306221
-
Identification of biochemical adaptations in hyper- or hypocontractile hearts from phospholamban mutant mice by expression proteomics
-
Pan, Y., Kislinger, T., Gramolini, A. O., Zvaritch, E., Kranias, E. G., MacLennan, D. H., and Emili, A. (2004) Identification of biochemical adaptations in hyper- or hypocontractile hearts from phospholamban mutant mice by expression proteomics. Proc. Natl. Acad. Sci. U. S. A. 101, 2241-2246
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 2241-2246
-
-
Pan, Y.1
Kislinger, T.2
Gramolini, A.O.3
Zvaritch, E.4
Kranias, E.G.5
MacLennan, D.H.6
Emili, A.7
-
43
-
-
0000857494
-
An approach to correlate tandem mass-spectral data of peptides with amino-acid-sequences in a protein database
-
Eng, J. K., McCormack, A. L., and Yates, J. R. I. (1994) An approach to correlate tandem mass-spectral data of peptides with amino-acid-sequences in a protein database. J. Am. Soc. Mass Spectrom. 11, 976-989
-
(1994)
J. Am. Soc. Mass Spectrom.
, vol.11
, pp. 976-989
-
-
Eng, J.K.1
McCormack, A.L.2
Yates, J.R.I.3
-
44
-
-
0036393898
-
DTASelect and Contrast: Tools for assembling and comparing protein identifications from shotgun proteomics
-
Tabb, D. L., McDonald, W. H., and Yates, J. R., 3rd. (2002) DTASelect and Contrast: Tools for assembling and comparing protein identifications from shotgun proteomics. J. Proteome Res. 1, 21-26
-
(2002)
J. Proteome Res.
, vol.1
, pp. 21-26
-
-
Tabb, D.L.1
McDonald, W.H.2
Yates III, J.R.3
-
45
-
-
3242731195
-
A model for random sampling and estimation of relative protein abundance in shotgun proteomics
-
Liu, H., Sadygov, R. G., and Yates, J. R., 3rd (2004) A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal. Chem. 76, 4193-4201
-
(2004)
Anal. Chem.
, vol.76
, pp. 4193-4201
-
-
Liu, H.1
Sadygov, R.G.2
Yates III, J.R.3
-
46
-
-
0013203966
-
FunSpec: A web-based cluster interpreter for yeast
-
Robinson, M. D., Grigull, J., Mohammad, N., and Hughes, T. R. (2002) FunSpec: A web-based cluster interpreter for yeast. BMC Bioinformatics 3, 35
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 35
-
-
Robinson, M.D.1
Grigull, J.2
Mohammad, N.3
Hughes, T.R.4
-
47
-
-
17844400139
-
-
Affymetrix Affymetrix Santa Clara, CA
-
Affymetrix (2001) GeneChip Muring Genome U74Av2 Set, Affymetrix, Santa Clara, CA
-
(2001)
GeneChip Muring Genome U74Av2 Set
-
-
-
50
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
Bolstad, B. M., Irizarry, R. A., Astrand, M., and Speed, T. P. (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19, 185-193
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
54
-
-
3543133355
-
Interactively optimizing signal-to-noise ratios in expression profiling: Project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays
-
Seo, J., Bakay, M., Chen, Y. W., Hilmer, S., Shneiderman, B., and Hoffman, E. P. (2004) Interactively optimizing signal-to-noise ratios in expression profiling: Project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays. Bioinformatics 20, 2534-2544
-
(2004)
Bioinformatics
, vol.20
, pp. 2534-2544
-
-
Seo, J.1
Bakay, M.2
Chen, Y.W.3
Hilmer, S.4
Shneiderman, B.5
Hoffman, E.P.6
-
55
-
-
0033051101
-
Direct analysis of protein complexes using mass spectrometry
-
Link, A. J., Eng, J., Schieltz, D. M., Carmack, E., Mize, G. J., Morris, D. R., Garvik, B. M., and Yates, J. R., 3rd. (1999) Direct analysis of protein complexes using mass spectrometry. Nat. Biotechnol. 17, 676-682
-
(1999)
Nat. Biotechnol.
, vol.17
, pp. 676-682
-
-
Link, A.J.1
Eng, J.2
Schieltz, D.M.3
Carmack, E.4
Mize, G.J.5
Morris, D.R.6
Garvik, B.M.7
Yates III, J.R.8
-
56
-
-
4444335470
-
The ABC's (and XYZ's) of peptide sequencing
-
Steen, H., and Mann, M. (2004) The ABC's (and XYZ's) of peptide sequencing. Nat. Rev. Mol. Cell. Biol. 5, 699-711
-
(2004)
Nat. Rev. Mol. Cell Biol.
, vol.5
, pp. 699-711
-
-
Steen, H.1
Mann, M.2
-
57
-
-
0141585549
-
PRISM, a generic large-scale proteomic investigation strategy for mammals
-
Kislinger, T., Rahman, K., Radulovic, D., Cox, B., Rossant, J., and Emili, A. (2003) PRISM, a generic large-scale proteomic investigation strategy for mammals. Mol. Cell. Proteomics 2, 96-106
-
(2003)
Mol. Cell Proteomics
, vol.2
, pp. 96-106
-
-
Kislinger, T.1
Rahman, K.2
Radulovic, D.3
Cox, B.4
Rossant, J.5
Emili, A.6
-
58
-
-
1542617945
-
Statistical models for protein validation using tandem mass spectral data and protein amino acid sequence databases
-
Sadygov, R. G., Liu, H., and Yates, J. R. (2004) Statistical models for protein validation using tandem mass spectral data and protein amino acid sequence databases. Anal. Chem. 76, 1664-1671
-
(2004)
Anal. Chem.
, vol.76
, pp. 1664-1671
-
-
Sadygov, R.G.1
Liu, H.2
Yates, J.R.3
-
59
-
-
0003585297
-
Data mining: Concepts and techniques
-
Morgan Kaufmann Publishers, San Francisco, CA
-
Han, J., and Kamber, M. (2000) Data mining: Concepts and techniques. The Morgan Kaufmann Series in Data Management Systems, Morgan Kaufmann Publishers, San Francisco, CA
-
(2000)
The Morgan Kaufmann Series in Data Management Systems
-
-
Han, J.1
Kamber, M.2
-
60
-
-
0037953090
-
Similarity among tandem mass spectra from proteomic experiments: Detection, significance, and utility
-
Tabb, D. L., MacCoss, M. J., Wu, C. C., Anderson, S. D., and Yates, J. R., 3rd. (2003) Similarity among tandem mass spectra from proteomic experiments: Detection, significance, and utility. Anal. Chem. 75, 2470-2477
-
(2003)
Anal. Chem.
, vol.75
, pp. 2470-2477
-
-
Tabb, D.L.1
MacCoss, M.J.2
Wu, C.C.3
Anderson, S.D.4
Yates III, J.R.5
-
61
-
-
3543023287
-
Direct proteomic mapping of the lung microvascular endothelial cell surface in vivo and in cell culture
-
Durr, E., Yu, J., Krasinska, K. M., Carver, L. A., Yates, J. R., Testa, J. E., Oh, P., and Schnitzer, J. E. (2004) Direct proteomic mapping of the lung microvascular endothelial cell surface in vivo and in cell culture. Nat. Biotechnol. 22, 985-992
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 985-992
-
-
Durr, E.1
Yu, J.2
Krasinska, K.M.3
Carver, L.A.4
Yates, J.R.5
Testa, J.E.6
Oh, P.7
Schnitzer, J.E.8
-
62
-
-
0038687165
-
Quantitative proteome analysis: Methods and applications
-
Aebersold, R. (2003) Quantitative proteome analysis: Methods and applications. J. Infect Dis. 187, (Suppl. 2) S315-S320
-
(2003)
J. Infect Dis.
, vol.187
, Issue.SUPPL. 2
-
-
Aebersold, R.1
-
63
-
-
0037165140
-
Prediction of central nervous system embryonal tumour outcome based on gene expression
-
Pomeroy, S. L., Tamayo, P., Gaasenbeek, M., Sturla, L. M., Angelo, M., McLaughlin, M. E., Kim, J. Y., Goumnerova, L. C., Black, P. M., Lau, C., Allen, J. C., Zagzag, D., Olson, J. M., Curran, T., Wetmore, C., Biegel, J. A., Poggio, T., Mukherjee, S., Rifkin, R., Califano, A., Stolovitzky, G., Louis, D. N., Mesirov, J. P., Lander, E. S., and Golub, T. R. (2002) Prediction of central nervous system embryonal tumour outcome based on gene expression. Nature 415, 436-442
-
(2002)
Nature
, vol.415
, pp. 436-442
-
-
Pomeroy, S.L.1
Tamayo, P.2
Gaasenbeek, M.3
Sturla, L.M.4
Angelo, M.5
McLaughlin, M.E.6
Kim, J.Y.7
Goumnerova, L.C.8
Black, P.M.9
Lau, C.10
Allen, J.C.11
Zagzag, D.12
Olson, J.M.13
Curran, T.14
Wetmore, C.15
Biegel, J.A.16
Poggio, T.17
Mukherjee, S.18
Rifkin, R.19
Califano, A.20
Stolovitzky, G.21
Louis, D.N.22
Mesirov, J.P.23
Lander, E.S.24
Golub, T.R.25
more..
-
64
-
-
17744413236
-
Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application
-
RESEARCH0032
-
Li, C., and Wong, W. H. (2001) Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application. Genome Biol. 2, RESEARCH0032
-
(2001)
Genome Biol.
, vol.2
-
-
Li, C.1
Wong, W.H.2
-
65
-
-
17844392693
-
Comparison of seven methods for producing Affymetrix expression scores based on false discovery rates in disease profiling data
-
Shedden, K., Chen, W., Kuick, R., Ghosh, D., Macdonald, J., Cho, K. R., Giordano, T. J., Gruber, S. B., Fearon, E. R., Taylor, J. M., and Hanash, S. (2005) Comparison of seven methods for producing Affymetrix expression scores based on false discovery rates in disease profiling data. BMC Bioinformatics 6, 26
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 26
-
-
Shedden, K.1
Chen, W.2
Kuick, R.3
Ghosh, D.4
Macdonald, J.5
Cho, K.R.6
Giordano, T.J.7
Gruber, S.B.8
Fearon, E.R.9
Taylor, J.M.10
Hanash, S.11
-
66
-
-
2542610720
-
Preprocessing of oligonucleotide array data
-
Wu, Z., and Irizarry, R. A. (2004) Preprocessing of oligonucleotide array data. Nat. Biotechnol. 22, 656-658
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 656-658
-
-
Wu, Z.1
Irizarry, R.A.2
-
67
-
-
0037945658
-
Proteomics - Advances, applications and the challenges that remain
-
Aebersold, R., and Cravatt, B. F. (2002) Proteomics - Advances, applications and the challenges that remain. Trends Biotechnol. 20, S1-S2
-
(2002)
Trends Biotechnol.
, vol.20
-
-
Aebersold, R.1
Cravatt, B.F.2
-
68
-
-
0141924429
-
Reproducibility of quantitative proteomic analyses of complex biological mixtures by multidimensional protein identification technology
-
Washburn, M. P., Ulaszek, R. R., and Yates, J. R., 3rd. (2003) Reproducibility of quantitative proteomic analyses of complex biological mixtures by multidimensional protein identification technology. Anal. Chem. 75, 5054-5061
-
(2003)
Anal. Chem.
, vol.75
, pp. 5054-5061
-
-
Washburn, M.P.1
Ulaszek, R.R.2
Yates III, J.R.3
-
69
-
-
12244270638
-
Differential proteomics via probabilistic peptide identification scores
-
Colinge, J., Chiappe, D., Lagache, S., Moniatte, M., and Bougueleret, L. (2005) Differential proteomics via probabilistic peptide identification scores. Anal. Chem. 77, 596-606
-
(2005)
Anal. Chem.
, vol.77
, pp. 596-606
-
-
Colinge, J.1
Chiappe, D.2
Lagache, S.3
Moniatte, M.4
Bougueleret, L.5
-
70
-
-
0037007048
-
Large-scale analysis of the human and mouse transcriptomes
-
Su, A. I., Cooke, M. P., Ching, K. A., Hakak, Y., Walker, J. R., Wiltshire, T., Orth, A. P., Vega, R. G., Sapinoso, L. M., Moqrich, A., Patapoutlan, A., Hampton, G. M., Schultz, P. G., and Hogenesch, J. B. (2002) Large-scale analysis of the human and mouse transcriptomes. Proc. Natl. Acad. Sci. U. S. A. 99, 4465-4470
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 4465-4470
-
-
Su, A.I.1
Cooke, M.P.2
Ching, K.A.3
Hakak, Y.4
Walker, J.R.5
Wiltshire, T.6
Orth, A.P.7
Vega, R.G.8
Sapinoso, L.M.9
Moqrich, A.10
Patapoutlan, A.11
Hampton, G.M.12
Schultz, P.G.13
Hogenesch, J.B.14
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