Rapid phenotypic characterization of Salmonella enterica strains by pyrolysis metastable atom bombardment mass spectrometry with multivariate statistical and artificial neural network pattern recognition

Journal of Microbiological Methods

Volumn 61, Issue 3, 2005, Pages 321-334

  Wilkes, Jon G ^a,b   Rushing, Larry ^a   Nayak, Rajesh ^a   Buzatu, Dan A ^a   Sutherland, John B ^a  

^a NATIONAL CENTER FOR TOXICOLOGICAL RESEARCH   (United States)

^b Division of Chemistry   (United States)

Author keywords

ANN; MAB; PyMS; Salmonella

Indexed keywords

BACITRACIN; ERYTHROMYCIN; GENTAMICIN; NOVOBIOCIN; RIFAMPICIN; SPECTINOMYCIN; STREPTOMYCIN; SULFAMETHOXAZOLE; TETRACYCLINE; TOBRAMYCIN; TRIMETHOPRIM;

ANTIBIOTIC RESISTANCE; ARTICLE; ARTIFICIAL NEURAL NETWORK; BACTERIAL STRAIN; BACTERIUM ISOLATE; CONTROLLED STUDY; CORRELATION ANALYSIS; DISCRIMINANT ANALYSIS; IMMUNOLOGY; INTERMETHOD COMPARISON; MASS SPECTROMETRY; MINIMUM INHIBITORY CONCENTRATION; MOLECULAR BIOLOGY; MULTIVARIATE ANALYSIS; NONHUMAN; PHENOTYPE; PRINCIPAL COMPONENT ANALYSIS; PRIORITY JOURNAL; PULSED FIELD GEL ELECTROPHORESIS; SALMONELLA ENTERICA; SEROTYPE; VALIDATION PROCESS;

SALMONELLA; SALMONELLA ENTERICA;

EID: 17644426709     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2004.12.016     Document Type: Article

References (50)

1. R.J. Arnold, and J.P. Reilly Fingerprint matching of E. coli strains with matrix-assisted laser desorption/ionization time-of-flight mass spectrometry of whole cells using a modified correlation approach Rapid Commun. Mass Spectrom. 12 1998 630 636
2. K.R. Beebe, R.J. Pell, and M.B. SeaSholtz Pattern recognition Chemometrics: A practical guide 1998 Wiley-Interscience New York 56 182 Chap. 4
3. M.J. Bertrand, P. Martin, and O. Peraldi A new concept in benchtop mass spectrometer, MAB-Tof 2000 PittCon New Orleans, LA 452 Abstract
4. G. Black, and A. Fox Liquid chromatography with electrospray ionization tandem mass spectrometry: Profiling carbohydrates in whole bacterial cell hydrolysates P. Snyder Biochemical and biotechnological applications of electrospray ionization mass spectrometry 1996 American Chemical Society Washington, DC 81 105
5. J.L. Bundy, and C. Fenselau Lectin and carbohydrate affinity capture surfaces for mass spectrometric analysis of microorganisms Anal. Chem. 73 2001 751 757
6. P. Butaye, L.A. Devriese, and F. Haesebrouck Antimicrobial growth promoters used in animal feed: effects of less well-known antibiotics on Gram-positive bacteria Clin. Microbiol. Rev. 16 2003 175 188
7. T.D. Cartmill, K. Orr, R. Freeman, P.R. Sisson, and N.F. Lightfoot Nosocomial infection with Clostridium difficile investigated by pyrolysis mass spectrometry J. Med. Microbiol. 37 1992 352 356
8. M.A. Claydon MALDI-ToF-MS, a new and novel technique for studies of intact cells Anaerobe 6 2000 133 134
9. J.M. Conly Antimicrobial resistance in Canada Can. Med. Assoc. J. 167 2002 885 891
10. G.C. Conway, S.C. Smole, D.A. Sarracino, R.D. Arbeit, and P.E. Leopold Phyloproteomics: Species identification of Enterobacteriaceae using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry J. Mol. Microbiol. Biotechnol. 3 2001 103 112
11. M. Cyr, D. Faubert, M. Mousselmal, and M.J. Bertrand Analysis of the emanations from heated polyurethane foam using MAB-MS Proc. 44th ASMS Conf. Mass Spectrom. Allied Topics 1996 American Society for Mass Spectrometry Santa Fe, New Mexico, USA 1267 Portland, OR
12. M.-E. Dumas, L. Debrauwer, L. Beyet, D. Lesage, F. André, A. Paris, and J.-C. Tabet Analyzing the physiological signature of anabolic steroids in cattle urine using pyrolysis/metastable atom bombardment mass spectrometry and pattern recognition Anal. Chem. 74 2002 5393 5404
13. D. Faubert, G.J.C. Paul, J. Giroux, and M.J. Bertrand Selective fragmentation and ionization of organic compounds using an energy-tunable rare-gas metastable beam source Int. J. Mass Spectrom. Ion Process. 124 1993 69 77
14. R. Freeman, F.K. Gould, R. Wilkinson, A.C. Ward, N.F. Lightfoot, and P.R. Sisson Rapid inter-strain comparison by pyrolysis mass spectrometry of coagulase-negative staphylococci from persistent CAPD peritonitis Epidemiol. Infect. 106 1991 239 246
15. R. Goodacre, and D.B. Kell Pyrolysis mass spectrometry and its applications in biotechnology Curr. Opin. Biotechnol. 7 1996 20 28
16. R. Goodacre, and D. Kell Correction of mass spectral drift using artificial neural networks Anal. Chem. 68 1996 271 280
17. R. Goodacre, E.A. Timmons, R. Burton, N. Kaderbhai, A.M. Woodward, D.B. Kell, and P.J. Rooney Rapid identification of urinary tract infection bacteria using hyperspectral whole-organism fingerprinting and artificial neural networks Microbiology 144 1998 1157 1170
18. F.K. Gould, R. Freeman, P.R. Sisson, B.D. Cookson, and N.F. Lightfoot Inter-strain comparison by pyrolysis mass spectrometry in the investigation of Staphylococcus aureus nosocomial infection J. Hosp. Infect. 19 1991 41 48
19. Y.A. Johnson, M. Nagpal, M.T. Krahmer, K.F. Fox, and A. Fox Precise molecular weight determination of PCR products of the rRNA intergenic spacer region using electrospray quadrupole mass spectrometry for differentiation of B. subtilis and B. atrophaeus, closely related species of bacilli J. Microbiol. Methods 40 2000 241 254
20. J.J. Jones, M.J. Stump, R.C. Fleming, J.O. Lay, and C.L. Wilkins Investigation of MALDI-TOF and FT-MS techniques for analysis of Escherichia coli whole cells Anal. Chem. 75 2003 1340 1347
21. R.G.K. Leuschner, N. Beresford-Jones, and C. Robinson Difference and consensus of whole cell Salmonella enterica subsp. enterica serovars matrix-assisted laser desorption/ionization time-of-flight mass spectrometry spectra Lett. Appl. Microbiol. 38 2003 24 31
22. J.P. Louie, and L.M. Bell Appropriate use of antibiotics for common infections in an era of increasing resistance Emerg. Med. Clin. North Am. 20 2002 69 91
23. M. Louie, and F.R. Cockerill Susceptibility testing: phenotypic and genotypic tests for bacteria and mycobacteria Infect. Dis. Clin. North Am. 15 2001 1205 1226
24. J.C. Low, R.M. Chalmers, W. Donachie, R. Freeman, J. McLaughlin, and P.R. Sisson Pyrolysis mass spectrometry of Listeria monocytogenes isolates from sheep Res. Vet. Sci. 53 1992 64 67
25. R.F. Meyer, and S.A. Morse Bioterrorism preparedness for the public health and medical communities Mayo Clin. Proc. 77 2002 619 621
26. P. Mireault, D. Faubert, A. Carrier, M. Mousselmal, and M.J. Bertrand Evaluation of MAB as a selective ion source for chromatography/mass spectrometry technique Proc. 44th ASMS Conf. Mass Spectrom. Allied Topics vol. 44 1996 American Society for Mass Spectrometry Santa Fe, New Mexico, USA 176 Portland, OR
27. M. Mousselmal, D. Faubert, M.J. Evans, and M.J. Bertrand Comparison of EI and MAB ionization for exact mass measurement Proc. 44th ASMS Conf. Mass Spectrom. Allied Topics vol. 44 1996 American Society for Mass Spectrometry Santa Fe, New Mexico, USA 73 Portland, OR
28. R. Nayak, T. Stewart, R.-F. Wang, J. Lin, C.E. Cerniglia, and P.B. Kenney Genetic diversity and virulence gene determinants of antibiotic-resistant Salmonella isolated from preharvest turkey production sources Int. J. Food Microbiol. 91 2004 51 62
29. NCCLS, 1993. Performance standards for antimicrobial disk susceptibility tests; Approved standard. NCCLS document M2-A5, NCCLS, 940 West Valley Road, Suite 1400, Wayne, PA 19087-1898, USA.
30. NCCLS, 1998. Methods for dilution antimicrobial susceptibility tests for bacteria that grow aerobically - Fourth edition. NCCLS document M7-A4, NCCLS, 940 West Valley Road, Suite 1400, Wayne, PA 19087-1898, USA.
31. K. Orr, F.K. Gould, P.R. Sisson, N.F. Lightfoot, R. Freeman, and D. Burdess Rapid inter-strain comparison by pyrolysis mass spectrometry in nosocomial infection with Xanthomonas maltophilia J. Hosp. Infect. 17 1991 187 195
32. C.E. Radcliffe, D.B. Drucker, V. Boote, G. Fletcher-Williams, and M.A. Claydon Phospholipid analogue profiles of Peptostreptococcus, Micromonas, and Finegoldia species analysed by fast atom bombardment mass spectrometry Can. J. Microbiol. 47 2001 96 101
33. D.E. Rumelhart, and T.L. McClelland Parallel distributed processing 1986 Brandford Books/MIT Press Cambridge, MA
34. F. Sadek, D.B. Drucker, V. Boote, K.W. Bennett, and A. Eley Phospholipids of Fusobacterium spp J. Appl. Microbiol. 85 1998 302 308
35. A.A. Salyers An overview of the genetic basis of antibiotic resistance in bacteria and its implications for agriculture Anim. Biotechnol. 13 2002 1 5
36. A.A. Salyers, and C.F. Amábile-Cuevas Why are antibiotic resistance genes so resistant to elimination? Antimicrob. Agents Chemother. 41 1997 2321 2325
37. H. Shen, J.F. Carter, R.G. Brereton, and C. Eckers Discrimination between tablet production methods using pyrolysis-gas chromatography-mass spectrometry and pattern recognition Analyst 128 2003 287 292
38. P.R. Sisson, R. Freeman, F.K. Gould, and N.F. Lightfoot Strain differentiation of nosocomial isolates of Pseudomonas aeruginosa by pyrolysis mass spectrometry J. Hosp. Infect. 19 1991 137 140
39. P.R. Sisson, R. Freeman, N.F. Lightfoot, and I.R. Richardson Incrimination of an environmental source of a case of Legionnaires' disease by pyrolysis mass spectrometry Epidemiol. Infect. 107 1991 127 132
40. P.R. Sisson, R. Freeman, J.G. Magee, and N.F. Lightfoot Differentiation between mycobacteria of the Mycobacterium tuberculosis complex by pyrolysis mass spectrometry Tubercle 72 1991 206 209
41. P.R. Sisson, R. Freeman, J.G. Magee, and N.F. Lightfoot Rapid differentiation of Mycobacterium xenopi from mycobacteria of the Mycobacterium avium-intracellulare complex by pyrolysis mass spectrometry J. Clin. Pathol. 45 1992 355 357
42. P.R. Sisson, J.M. Kramer, M.M. Brett, R. Freeman, R.J. Gilbert, and N.F. Lightfoot Application of pyrolysis mass spectrometry to the investigation of outbreaks of food poisoning and non-gastrointestinal infection associated with Bacillus species and Clostridium perfringens Int. J. Food Microbiol. 17 1992 57 66
43. S.C. Smole, L.A. King, P.E. Leopold, and R.D. Arbeit Sample preparation of Gram-positive bacteria for identification by matrix-assisted laser desorption/ionization time-of-flight J. Microbiol. Methods 48 2002 107 115
44. J.W. Snyder Role of the hospital-based microbiology laboratory in preparation for and response to a bioterrorism event J. Clin. Microbiol. 41 2003 1 4
45. M.T. Spining, J.A. Darsey, B.G. Sumpter, and D.W. Noid Opening up the black box of artificial neural networks J. Chem. Educ. 71 1994 406 411
46. T.J. Török, R.V. Tauxe, R.P. Wise, J.R. Livengood, R. Sokolow, S. Mauvais, K.A. Birkness, M.R. Skeels, J.M. Horan, and L.R. Foster A large community outbreak of salmonellosis caused by intentional contamination of restaurant salad bars J. Am. Med. Assoc. 278 1997 389 395
47. B.L.M. van Baar Characterisation of bacteria by matrix-assisted laser desorption/ionization and electrospray mass spectrometry FEMS Microbiol. Rev. 24 2000 193 219
48. Wilkes, J., Rafii, F., Glover, K., Holcomb, M., Cao, X., Sutherland, J., 2001. Microbial Identification Databases. US Patent Application No. 09/975,530, filed October 10, 2001.
49. J.G. Wilkes, K.L. Glover, M. Holcomb, F. Rafii, X. Cao, J.B. Sutherland, S.A. McCarthy, S. Letarte, and M.J. Bertrand Defining and using microbial spectral databases J. Am. Soc. Mass Spectrom. 13 2002 875 887
50. H.P. Willett Antimicrobial agents W.K. Joklik H.P. Willett D.B. Amos C.M. Wilfert Zinsser microbiology 19th ed. 1988 Appleton & Lange Norwalk, CT 128 160