U7 snRNP-specific Lsm11 protein: Dual binding contacts with the 100 kDa zinc finger processing factor (ZFP100) and a ZFP100-independent function in histone RNA 3′ end processing

Nucleic Acids Research

Volumn 33, Issue 7, 2005, Pages 2106-2117

  Azzouz, Teldja N ^a   Gruber, Andreas ^a   Schümperli, Daniel ^a  

^a UNIVERSITY OF BERN   (Switzerland)

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE; MESSENGER RNA; MESSENGER RNA PRECURSOR; PROTEIN LSM11; PROTEIN SM; SHORT HAIRPIN RNA; SMALL NUCLEAR RIBONUCLEOPROTEIN; SMALL NUCLEAR RNA; UNCLASSIFIED DRUG; ZINC FINGER PROTEIN; ZINC FINGER PROTEIN 100; DNA BINDING PROTEIN; LSM11 PROTEIN, MOUSE; ZNF473 PROTEIN, HUMAN;

AMINO TERMINAL SEQUENCE; ARTICLE; BASE PAIRING; CONTROLLED STUDY; HUMAN; HUMAN CELL; NONHUMAN; POINT MUTATION; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; RNA CLEAVAGE; RNA PROCESSING; AMINO ACID SEQUENCE; ANIMAL; BINDING SITE; CELL LINE; CHEMISTRY; GENETICS; METABOLISM; MOUSE; MUTATION; NUCLEOTIDE SEQUENCE; PROTEIN TERTIARY STRUCTURE;

ANIMALIA;

AMINO ACID SEQUENCE; ANIMALS; BINDING SITES; CELL LINE; CONSERVED SEQUENCE; DNA-BINDING PROTEINS; HISTONES; HUMANS; MICE; MUTATION; PROTEIN STRUCTURE, TERTIARY; RIBONUCLEOPROTEIN, U7 SMALL NUCLEAR; RIBONUCLEOPROTEINS, SMALL NUCLEAR; RNA 3' END PROCESSING; ZINC FINGERS;

EID: 17544370375     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gki516     Document Type: Article

References (27)

1. Schümperli,D. (1988) Multilevel regulation of replication-dependent histone genes. Trends Genet., 4, 187-191.
2. Müller,B. and Schümperli,D. (1997) The U7 snRNP and the hairpin binding protein: Key players in histone mRNA metabolism. Semin. Cell Dev. Biol., 8, 567-576.
3. Marzluff,W.F. and Duronio,R.J. (2002) Histone mRNA expression: Multiple levels of cell cycle regulation and important developmental consequences. Curr. Opin. Cell Biol., 14, 692-699.
4. Harris,M.E., Böhni,R., Schneiderman,M.H., Ramamurthy,L., Schümperli,D. and Marzluff,W.F. (1991) Regulation of histone mRNA in the unperturbed cell cycle: Evidence suggesting control at two posttranscriptional steps. Mol. Cell. Biol., 11, 2416-2424.
5. Whitfield,M.L., Zheng,L.X., Baldwin,A., Ohta,T., Hurt,M.M. and Marzluff,W.F. (2000) Stem loop binding protein, the protein that binds the 3′ end of histone mRNA, is cell cycle regulated by both translational and posttranslational mechanisms. Mol. Cell. Biol., 20, 4188-4198.
6. Martin,F., Schaller,A., Eglite,S., Schümperli,D. and Müller,B. (1997) The gene for histone RNA hairpin binding protein is located on human chromosome 4 and encodes a novel type of RNA binding protein. EMBO J., 15, 769-778.
7. Wang,Z.F., Whitfield,M.L., Ingledue,T.C., Dominski,Z. and Marzluff,W.F. (1996) The protein that binds the 3′ end of histone mRNA: A novel RNA-binding protein required for histone pre-mRNA processing. Genes Dev., 10, 3028-3040.
8. Streit,A., Wittop Koning,T.H., Soldati,D., Melin,L. and Schümperli,D. (1993) Variable effects of the conserved RNA hairpin element upon 3′ end processing of histone pre-mRNA in vitro. Nucleic Acids Res., 21, 1569-1575.
9. Spycher,C., Streit,A., Stefanovic,B., Albrecht,D., Wittop Koning,T.H. and Schümperli,D. (1994) 3′ end processing of mouse histone pre-mRNA: Evidence for additional base-pairing between U7 snRNA and pre-mRNA. Nucleic Acids Res., 22, 4023-4030.
10. Dominski,Z., Zheng,L.X., Sanchez,R. and Marzluff,W.F. (1999) Stem loop binding protein facilitates 3′-end formation by stabilizing U7 snRNP binding to histone pre-mRNA. Mol. Cell. Biol., 19, 3561-3570.
11. Schaufele,F., Gilmartin,G.M., Bannwarth,W. and Birnstiel,M.L. (1986) Compensatory mutations suggest that base-pairing with a small nuclear RNA is required to form the 3′ end of H3 messenger RNA. Nature, 323, 777-781.
12. Bond,U.M., Yario,T.A. and Steitz,J.A. (1991) Multiple processing-defective mutations in a mammalian histone premessenger RNA are suppressed by compensatory changes in U7 RNA both in vivo and in vitro. Genes Dev., 5, 1709-1722.
13. Melin,L., Soldati,D., Mital,R., Streit,A. and Schümperli,D. (1992) Biochemical demonstration of complex formation of histone pre-mRNA with U7 small nuclear ribonucleoprotein and hairpin binding factors. EMBO J., 11, 691-697.
14. Dominski,Z., Erkmann,J.A., Yang,X., Sanchez,R. and Marzluff,W.F. (2002) A novel zinc finger protein is associated with U7 snRNP and interacts with the stem-loop binding protein in the histone pre-mRNP to stimulate 3′-end processing. Genes Dev., 16, 58-71.
15. Pillai,R.S., Will,C.L., Lührmann,R., Schümperli,D. and Müller,B. (2001) Purified U7 snRNPs lack the Sm proteins D1 and D2 but contain Lsm10, a new 14 kDa Sm D1-like protein. EMBO J., 20, 5470-5479.
16. Pillai,R.S., Grimmler,M., Meister,G., Will,C.L., Lührmann,R., Fischer,U. and Schümperli,D. (2003) Unique Sm core structure of U7 snRNPs: Assembly by a specialized SMN complex and the role of a new component, Lsm11, in histone RNA processing. Genes Dev., 17, 2321-2333.
17. Schümperli,D. and Pillai,R.S. (2004) The special Sm core structure of the U7 snRNP: Far-reaching significance of a small nuclear ribonucleoprotein. Cell Mol. Life Sci., 60, 2560-2570.
18. Kambach,C., Walke,S. and Nagai,K. (1999) Structure and assembly of the spliceosomal small nuclear ribonucleoprotein particles. Curr. Opin. Struct. Biol., 9, 222-230.
19. Will,C.L. and Lührmann,R. (2001) Spliceosomal UsnRNP biogenesis, structure and function. Curr. Opin. Cell Biol., 13, 290-301.
20. Grimm,C., Stefanovic,B. and Schümperli,D. (1993) The low abundance of U7 snRNA is partly determined by its Sm binding site. EMBO J., 12, 1229-1238.
21. Stefanovic,B., Hackl,W., Lührmann,R. and Schümperli,D. (1995) Assembly, nuclear import and function of U7 snRNPs studied by microinjection of synthetic U7 RNA into Xenopus oocytes. Nucleic Acids Res., 23, 3141-3151.
22. Azzouz,T.N. and Schümperli,D. (2003) Evolutionary conservation of the U7 small nuclear ribonucleoprotein in Drosophila melanogaster. RNA, 9, 1532-1541.
23. Will,C.L., Kastner,B. and Lührmann,R. (1994) Analysis of ribonucleoprotein interactions. In Higgins,S.J. and Hames,B.D. (eds), RNA Processing. Oxford University Press, Oxford Vol. 1, pp. 141-177.
24. Lerner,E.A., Lerner,M.R., Janeway,C.A. and Steitz,J.A. (1981) Monoclonal antibodies to nucleic acid-containing cellular constituents: Probes for molecular biology and autoimmune disease. Proc. Natl Acad. Sci. USA, 78, 2737-2741.
25. Stefanovic,B., Wittop Koning,T.H. and Schümperli,D. (1995) A synthetic histone pre-mRNA-U7 small nuclear RNA chimera undergoing cis cleavage in the cytoplasm of Xenopus oocytes. Nucleic Acids Res., 23, 3152-3160.
26. Witzgall,R., O'Leary,E., Gessner,R., Ouellette,A.J. and Bonventre,J.V. (1993) Kid-1, a putative renal transcription factor: Regulation during ontogeny and in response to ischemia and toxic injury. Mol. Cell. Biol., 13, 1933-1942.
27. Kozak,M. (1981) Possible role of flanking nucleotides in recognition of the AUG initiator codon by eukaryotic ribosomes. Nucleic Acids Res., 9, 5233-5262.