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Volumn 21, Issue 8, 2005, Pages 1713-1714

GeneContent: Software for whole-genome phylogenetic analysis

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; DEVICE; GENE LOSS; GENETIC DISTANCE; GENOME; MULTIGENE FAMILY; PHYLOGENY; PRIORITY JOURNAL;

EID: 17444410384     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti208     Document Type: Article
Times cited : (11)

References (11)
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    • Inferring genome trees by using a filter to eliminate phylogenetically discordant sequences and a distance matrix based on mean normalized BLASTP scores
    • Clarke,G.D.P., Beiko,R.G., Ragan,M.A. and Charlebois,R.L. (2002) Inferring genome trees by using a filter to eliminate phylogenetically discordant sequences and a distance matrix based on mean normalized BLASTP scores. J. Bacteriol., 184, 2072-2080.
    • (2002) J. Bacteriol. , vol.184 , pp. 2072-2080
    • Clarke, G.D.P.1    Beiko, R.G.2    Ragan, M.A.3    Charlebois, R.L.4
  • 2
    • 0033231209 scopus 로고    scopus 로고
    • Whole genome-based phylogenetic analysis of free-living microorganisms
    • Fitz-Gibbon,S.T. and House,C.H. (1999) Whole genome-based phylogenetic analysis of free-living microorganisms. Nucleic Acids Res., 27, 4218-4222.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 4218-4222
    • Fitz-Gibbon, S.T.1    House, C.H.2
  • 3
    • 3042643735 scopus 로고    scopus 로고
    • Genome phylogenetic analysis based on extended gene contents
    • Gu,X. and Zhang,H.M. (2004) Genome phylogenetic analysis based on extended gene contents. Mol. Biol. Evol., 21, 1401-1408.
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1401-1408
    • Gu, X.1    Zhang, H.M.2
  • 4
    • 0036218557 scopus 로고    scopus 로고
    • Using homolog groups to create a whole-genomic tree of free-living organisms: An update
    • House,C.H. and Fitz-Gibbon,S.T. (2002) Using homolog groups to create a whole-genomic tree of free-living organisms: an update. J. Mol. Evol., 54, 539-547.
    • (2002) J. Mol. Evol. , vol.54 , pp. 539-547
    • House, C.H.1    Fitz-Gibbon, S.T.2
  • 5
    • 0000298267 scopus 로고    scopus 로고
    • Technical comments on Doolittle [1999a]
    • Huynen,M.A., Snel,B. and Bork,P. (1999) Technical comments on Doolittle [1999a]. Science, 286, 1443a.
    • (1999) Science , vol.286
    • Huynen, M.A.1    Snel, B.2    Bork, P.3
  • 6
    • 0036499057 scopus 로고    scopus 로고
    • SHOT: A web server for the construction of genome phylogenies
    • Korbel,J.O., Snel,B., Huynene,M.A. and Bork,P. (2002) SHOT: a web server for the construction of genome phylogenies. Trends Genet. 18, 158-162.
    • (2002) Trends Genet. , vol.18 , pp. 158-162
    • Korbel, J.O.1    Snel, B.2    Huynene, M.A.3    Bork, P.4
  • 7
    • 0033918311 scopus 로고    scopus 로고
    • Whole-genome trees based on the occurrence of folds and orthologs: Implication for comparing genomes on different levels
    • Lin,J. and Gerstein,M. (2000) Whole-genome trees based on the occurrence of folds and orthologs: implication for comparing genomes on different levels. Genome Res., 10, 808-818.
    • (2000) Genome Res. , vol.10 , pp. 808-818
    • Lin, J.1    Gerstein, M.2
  • 8
    • 0034572821 scopus 로고    scopus 로고
    • Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGS)
    • Natale,D.A., Shankavaram,U.T., Galperin,M.Y., Wolf,Y.I., Aravind,L. and Koonin,E.V. (2000) Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGS). Genome Biol., 1, RESEARCH0009.
    • (2000) Genome Biol. , vol.1
    • Natale, D.A.1    Shankavaram, U.T.2    Galperin, M.Y.3    Wolf, Y.I.4    Aravind, L.5    Koonin, E.V.6
  • 9
    • 0023375195 scopus 로고
    • The neigbbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou,N. and Nei,M. (1987) The neigbbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Bol. Evol., 4, 406-425.
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    • Saitou, N.1    Nei, M.2
  • 10
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    • Genome phylogeny based on gene content
    • Snel,B., Bork,P. and Huynen,M.A. (1999) Genome phylogeny based on gene content. Nat. Genet., 21, 108-110.
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    • Snel, B.1    Bork, P.2    Huynen, M.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.