Cloning and characterization of a region responsible for the maintenance of megaplasmid pTAV3 of Paracoccus versutus UW1

Plasmid

Volumn 53, Issue 3, 2005, Pages 239-250

  Dolowy, Patrycja ^a,b   Mondzelewski, Jakub ^a   Zawadzka, Renata ^a   Baj, Jadwiga ^a   Bartosik, Dariusz ^a  

^a UNIVERSITY OF WARSAW   (Poland)

^b INSTITUTE OF BIOCHEMISTRY AND BIOPHYSICS   (Poland)

Author keywords

Incompatibility; Megaplasmid; Paracoccus versutus; Partitioning site; pTAV3

Indexed keywords

ALPHAPROTEOBACTERIA; ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; BACTERIAL CHROMOSOME; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM CONJUGATION; CONTROLLED STUDY; DATA BASE; GENETIC CODE; GENETIC INCOMPATIBILITY; INFORMATION RETRIEVAL; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PARACOCCUS VERSUTUS; PLASMID; REPLICON; RHODOBACTER SPHAEROIDES; STRUCTURAL HOMOLOGY;

EID: 17444387814     PISSN: 0147619X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plasmid.2004.11.005     Document Type: Article

References (32)

1. S.F. Altschul, W. Gish, W. Miller, E.W. Myers, and D.J. Lipman Basic local alignment search tool J. Mol. Biol. 215 1990 403 410
2. D. Bartosik, A. Bialkowska, J. Baj, and M. Wlodarczyk Construction of mobilizable cloning vectors derived from pBGS18 and their application for analysis of replicator region of a pTAV202 mini-derivative of Paracoccus versutus pTAV1 plasmid Acta Microbiol. Pol. 46 1997 379 383
3. D. Bartosik, J. Baj, and M. Wlodarczyk Molecular and functional analysis of pTAV320-repABC type replicon of a composite pTAV1 plasmid of Paracoccus versutus Microbiology 144 1998 3149 3157
4. D. Bartosik, M. Szymanik, and E. Wysocka Identification of the partitioning centromere-like sequence within the repABC-type replicon of the composite Paracoccus versutus plasmid pTAV1 J. Bacteriol. 183 2001 6234 6243
5. D. Bartosik, J. Baj, A.A. Bartosik, and M. Wlodarczyk Characterisation of the replicator region of megaplasmid pTAV3 of Paracoccus versutus and search for plasmid-encoded traits Microbiology 148 2002 871 881
6. D. Bartosik, J. Baj, E. Piechucka, E. Waker, and M. Wlodarczyk Comparative characterization of paracoccal type repABC replicons Plasmid 48 2002 130 141
7. D. Bartosik, J. Baj, E. Piechucka, and M. Wlodarczyk Molecular characterization of functional modules of plasmid pWKS1 of Paracoccus pantotrophus DSM 11072 Microbiology 148 2002 2847 2856
8. C. Bignell, and C.M. Thomas The bacterial ParA-ParB partitioning proteins J. Biotechnol. 91 2001 1 34
9. M. Choudhary, C. Mackenzie, K. Nereng, E. Sodergren, G.M. Weinstock, and S. Kaplan Low-resolution sequencing of Rhodobacter sphaeroides 2.4.1T: chromosome II is a true chromosome Microbiology 143 1997 3085 3099
10. G. Churchward, D. Belin, and Y. Nagamine A pSC101-derived plasmid which shows no sequence homology to other commonly used cloning vectors Gene 31 1984 165 171
11. J. Devereux, P. Haeberli, and O. Smithies A comprehensive set of sequence analysis programs for the VAX Nucleic Acids Res. 11 1984 387 395
12. G. Ditta, S. Stanfield, D. Corbin, and D.R. Helinski Broad host-range DNA cloning system for Gram-negative bacteria: construction of a bank of Rhizobium meliloti Proc. Natl. Acad. Sci. USA 77 1980 7347 7351
13. B.E. Funnell Participation of Escherichia coli integration host factor in the P1 plasmid partition system Proc. Natl. Acad. Sci. USA 85 1988 6657 6661
14. K. Gerdes, J. Moller-Jensen, and R. Bugge Jensen Plasmid and chromosome partitioning: surprises from phylogeny Mol. Microbiol. 37 2000 455 466
15. D. Lane, R. Rothenbuehler, A.M. Merrillat, and C. Aiken Analysis of the F plasmid centromere Mol. Gen. Genet. 207 1987 406 412
16. E. Jumas-Bilak, S. Michaux-Charachon, G. Bourg, M. Ramuz, and A. Allardet-Servent Unconventional genomic organization in the alpha subgroup of the Proteobacteria J. Bacteriol. 180 1998 2749 2755
17. N.T. Keen, S. Tamaki, D. Kobayashi, and D. Trollinger Improved broad-host-range plasmids for DNA cloning in gram-negative bacteria Gene 70 1988 191 197
18. S.K. Kim, and J.C. Wang Gene silencing via protein-mediated subcellular localization of DNA Proc. Natl. Acad. Sci. USA 96 1999 8557 8561
19. S.R. Kushner An improved method for transformation of E. coli with ColE1-derived plasmids H.B. Boyer S. Nicosia Genetic Engineering 1978 Elsevier/North-Holland Amsterdam 17 23
20. N. Kusukawa, H. Mori, A. Kondo, and S. Hiraga Partitioning of the F plasmid: overproduction of an essential protein for partition inhibits plasmid maintenance Mol. Gen. Genet. 208 1987 365 372
21. C.J. Marx, and M.E. Lidstrom Broad-host-range cre-lox system for antibiotic marker recycling in gram-negative bacteria Biotechniques 33 2002 1062 1067
22. M.A. Ramírez-Romero, P. Bustos, L. Girard, O. Rodríguez, M.A. Cevallos, and G. Dávila Sequence, localization and characteristics of the replicator region of the symbiotic plasmid of Rhizobium etli Microbiology 143 1997 2825 2831
23. M.A. Ramírez-Romero, J. Tellez-Sosa, H. Barrios, A. Perez-Oseguera, V. Rosas, and M.A. Cevallos RepA negatively autoregulates the transcription of the repABC operon of the Rhizobium etli symbiotic plasmid basic replicon Mol. Microbiol. 42 2001 195 204
24. O. Rodionov, M. Lobocka, and M. Yarmolinsky Silencing of genes flanking the P1 plasmid centromere Science 283 1999 546 549
25. J. Sambrook, and D.W. Russell Molecular Cloning: A Laboratory Manual third ed. 2001 Cold Spring Harbor Laboratory Press Cold Spring Harbor, NY
26. B.G. Spratt, P.J. Hedge, S. te Heesen, A. Edelman, and J.K. Broome-Smith Kanamycin-resistant vectors that are analogues of plasmids pUC8, pUC9, pEMBL8 and pEMBL9 Gene 41 1986 337 342
27. S. Turner, and J.P.W. Young The replicator region of the Rhizobium leguminosarum cryptic plasmid pRL8JI FEMS Microbiol. Lett. 133 1995 53 58
28. R. Wheatcroft, G.D. McRae, and R.W. Miller Changes in the Rhizobium meliloti genome and the ability to detect supercoiled plasmids during bacteroid development Mol. Plant-Microbe Interact. 3 1990 9 17
29. C. Winterstein, and B. Ludwig Genes coding for respiratory complexes map on all three chromosomes of the Paracoccus denitrificans genome Arch. Microbiol. 169 1998 275 281
30. A.P. Wood, and D.P. Kelly Heterotrophic growth of Thiobacillus A2 on sugars and organic acids Arch. Microbiol. 113 1977 257 264
31. Z. Zhong, R. Caspi, D. Helinski, V. Knauf, S. Sykes, C. O'Byrne, T.P. Shea, J.E. Wilkinson, C. DeLoughery, and A. Toukdarian Nucleotide sequence based characterizations of two cryptic plasmids from the marine bacterium Ruegeria isolate PR1b Plasmid 49 2003 233 252
32. U. Zielenkiewicz, and P. Ceglowski Mechanisms of plasmid stable maintenance with special focus on plasmid addiction systems Acta Biochim. Pol. 48 2001 1003 1023