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Volumn 143, Issue 10, 1997, Pages 3085-3099

Low-resolution sequencing of Rhodobacter sphaeroides 2,4.1(T): Chromosome II is a true chromosome

Author keywords

Complex genomes; Genome analysis; Genome evolution; Sequence skimming

Indexed keywords

RIBOSOME RNA; TRANSFER RNA;

EID: 0030830890     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/00221287-143-10-3085     Document Type: Article
Times cited : (29)

References (52)
  • 1
    • 0027146592 scopus 로고
    • Presence of one linear and one circular chromosome in the Agrobacterium tumefaciens C58 genome
    • Allardet-Servent, A., Michaux-Charachon, S., Jumas-Bilak, E., Karayan, L. & Ramuz, M. (1993). Presence of one linear and one circular chromosome in the Agrobacterium tumefaciens C58 genome. J Bacteriol 175, 7869-7874.
    • (1993) J Bacteriol , vol.175 , pp. 7869-7874
    • Allardet-Servent, A.1    Michaux-Charachon, S.2    Jumas-Bilak, E.3    Karayan, L.4    Ramuz, M.5
  • 2
    • 0022555851 scopus 로고
    • Bacterial periplasmic transport systems: Structure, mechanism and evolution
    • Ames, G. F.-L. (1986). Bacterial periplasmic transport systems: structure, mechanism and evolution. Annu Rev Biochem 55, 397-425.
    • (1986) Annu Rev Biochem , vol.55 , pp. 397-425
    • Ames, G.F.-L.1
  • 3
    • 16044367245 scopus 로고    scopus 로고
    • Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii
    • Bult, C. J., White, O., Olsen, G. J. & 37 other authors (1996). Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii. Science 273, 1058-1073.
    • (1996) Science , vol.273 , pp. 1058-1073
    • Bult, C.J.1    White, O.2    Olsen, G.J.3
  • 4
    • 0028318250 scopus 로고
    • Multiple replicons constituting the genome of Pseudomonas cepacia 17616
    • Cheng, H. & Lessie, T. G. (1994). Multiple replicons constituting the genome of Pseudomonas cepacia 17616. J Bacteriol 176, 4034-4042.
    • (1994) J Bacteriol , vol.176 , pp. 4034-4042
    • Cheng, H.1    Lessie, T.G.2
  • 6
    • 0028897120 scopus 로고
    • Improved strategy for large-scale DNA sequencing using DNase I cleavage for generating random subclones
    • Demolis, N., Mallet, L., Bussereau, F. & Jacquet, M. (1995). Improved strategy for large-scale DNA sequencing using DNase I cleavage for generating random subclones. Biotechniques 18, 197-201.
    • (1995) Biotechniques , vol.18 , pp. 197-201
    • Demolis, N.1    Mallet, L.2    Bussereau, F.3    Jacquet, M.4
  • 7
    • 0021759609 scopus 로고
    • Analysis of the Escherichia coli proBA locus by DNA and protein sequencing
    • Deutch, A. H., Rushlow, K. E. & Smith, C. J. (1984). Analysis of the Escherichia coli proBA locus by DNA and protein sequencing. Nucleic Acids Res 12, 6337-6355.
    • (1984) Nucleic Acids Res , vol.12 , pp. 6337-6355
    • Deutch, A.H.1    Rushlow, K.E.2    Smith, C.J.3
  • 9
    • 0025604834 scopus 로고
    • Localization and structural analysis of the ribosomal RNA operons of Rhodobacter sphaeroides
    • Dryden, S. C. & Kaplan, S. (1990). Localization and structural analysis of the ribosomal RNA operons of Rhodobacter sphaeroides. Nucleic Acids Res 18, 7267-7277.
    • (1990) Nucleic Acids Res , vol.18 , pp. 7267-7277
    • Dryden, S.C.1    Kaplan, S.2
  • 10
    • 0029052325 scopus 로고
    • Cloning and expression of a murein hydrolase lipoprotein from Escherichia coli
    • Ehlert, K., Höltje, J. & Templin, M. F. (1995). Cloning and expression of a murein hydrolase lipoprotein from Escherichia coli. Mol Microbiol 16, 761-768.
    • (1995) Mol Microbiol , vol.16 , pp. 761-768
    • Ehlert, K.1    Höltje, J.2    Templin, M.F.3
  • 11
    • 0024419262 scopus 로고
    • Megabase-sized linear DNA in the bacterium Borrelia burgodorferi, the Lyme disease agent
    • Ferdows, M. S. & Barbour, G. (1989). Megabase-sized linear DNA in the bacterium Borrelia burgodorferi, the Lyme disease agent. Proc Natl Acad Sci USA 86, 5969-5973.
    • (1989) Proc Natl Acad Sci USA , vol.86 , pp. 5969-5973
    • Ferdows, M.S.1    Barbour, G.2
  • 12
    • 0025864008 scopus 로고
    • Identifying potential tRNA genes in genomic DNA sequence
    • Fichant, G. A. & Burks, C. (1991). Identifying potential tRNA genes in genomic DNA sequence. J Mol Biol 220, 659-671.
    • (1991) J Mol Biol , vol.220 , pp. 659-671
    • Fichant, G.A.1    Burks, C.2
  • 13
    • 0022474397 scopus 로고
    • Second symbiotic megaplasmid in Rhizobium meliloti carrying exopolysaccharide and thiamine synthesis genes
    • Finan, T. M., Kunkel, B., Vos, G. F. W. & Signer, E. R. (1986). Second symbiotic megaplasmid in Rhizobium meliloti carrying exopolysaccharide and thiamine synthesis genes. J Bacteriol 167, 66-72.
    • (1986) J Bacteriol , vol.167 , pp. 66-72
    • Finan, T.M.1    Kunkel, B.2    Vos, G.F.W.3    Signer, E.R.4
  • 14
    • 0029653518 scopus 로고
    • Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
    • Fleischmann, R. D., Adams, M. D., White, O. & 37 other authors (1995). Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269, 496-512.
    • (1995) Science , vol.269 , pp. 496-512
    • Fleischmann, R.D.1    Adams, M.D.2    White, O.3
  • 15
    • 0029063730 scopus 로고
    • Physical mapping of bacterial genomes
    • Fonstein, M. & Haselkorn, R. (1995). Physical mapping of bacterial genomes. J Bacteriol 177, 3361-3369.
    • (1995) J Bacteriol , vol.177 , pp. 3361-3369
    • Fonstein, M.1    Haselkorn, R.2
  • 16
    • 0001106373 scopus 로고
    • Degradative plasmids in Pseudomonas
    • Edited by J. R. Sokatch. New York: Academic Press
    • Frantz, B. & Chakrabarty, A. M. (1986). Degradative plasmids in Pseudomonas. In The Bacteria, vol. X, The Biology of the Pseudomonads, pp. 295-323. Edited by J. R. Sokatch. New York: Academic Press.
    • (1986) The Bacteria, Vol. X, the Biology of the Pseudomonads , vol.10 , pp. 295-323
    • Frantz, B.1    Chakrabarty, A.M.2
  • 17
    • 0028829125 scopus 로고
    • The minimal gene complement of Mycoplasma genitalium
    • Fraser, C. M., Jeannine, D. G., White, O. & 26 other authors (1995). The minimal gene complement of Mycoplasma genitalium. Science 270, 397-403.
    • (1995) Science , vol.270 , pp. 397-403
    • Fraser, C.M.1    Jeannine, D.G.2    White, O.3
  • 18
    • 0029845355 scopus 로고    scopus 로고
    • Sequencing the 500-kb GC-rich symbiotic replicon of Rhizobium sp. NGR234 using dye terminators and a thermostable 'sequenase': A beginning
    • Freiberg, C., Perret, X., Broughton, W. J. & Rosenthal, A. (1996). Sequencing the 500-kb GC-rich symbiotic replicon of Rhizobium sp. NGR234 using dye terminators and a thermostable 'sequenase': a beginning. Genome Res 6, 590-600.
    • (1996) Genome Res , vol.6 , pp. 590-600
    • Freiberg, C.1    Perret, X.2    Broughton, W.J.3    Rosenthal, A.4
  • 20
    • 0007857524 scopus 로고
    • Energy conservation and generation of reducing power in bacterial photosynthesis
    • Gest, H. (1972). Energy conservation and generation of reducing power in bacterial photosynthesis. Adv Microb Physiol 7, 243-282.
    • (1972) Adv Microb Physiol , vol.7 , pp. 243-282
    • Gest, H.1
  • 21
    • 0027423563 scopus 로고
    • Bacillus subtilis genome project: Cloning and sequencing of the 97 kb region from 325° to 333°
    • Glaser, P., Kunst, F., Arnaud, M. & 14 other authors (1993). Bacillus subtilis genome project: cloning and sequencing of the 97 kb region from 325° to 333°. Mol Microbiol 10, 371-384.
    • (1993) Mol Microbiol , vol.10 , pp. 371-384
    • Glaser, P.1    Kunst, F.2    Arnaud, M.3
  • 22
    • 0025278580 scopus 로고
    • Roles of CfxA, CfxB, and external electron acceptors in regulation of ribulose 1,5-bisphosphate carboxylase/oxygenase expression in Rhodobacter sphaeroides
    • Hallenbeck, P. L., Lerchen, R., Hessler, P. & Kaplan, S. (1990a). Roles of CfxA, CfxB, and external electron acceptors in regulation of ribulose 1,5-bisphosphate carboxylase/oxygenase expression in Rhodobacter sphaeroides. J Bacteriol 172, 1736-1748.
    • (1990) J Bacteriol , vol.172 , pp. 1736-1748
    • Hallenbeck, P.L.1    Lerchen, R.2    Hessler, P.3    Kaplan, S.4
  • 25
    • 0023968065 scopus 로고
    • Molecular genetics of photosynthetic membrane biosynthesis in Rhodobacter sphaeroides
    • Kiley, P. J. & Kaplan, S. (1988). Molecular genetics of photosynthetic membrane biosynthesis in Rhodobacter sphaeroides. Microbiol Rev 52, 50-69.
    • (1988) Microbiol Rev , vol.52 , pp. 50-69
    • Kiley, P.J.1    Kaplan, S.2
  • 26
    • 0028170967 scopus 로고
    • Molecular cloning and sequence analysis of the proBA operon from an extremely therophilic eubacterium Thermus thermophilus
    • Kosuge, T., Tabata, K. & Hoshino, T. (1994). Molecular cloning and sequence analysis of the proBA operon from an extremely therophilic eubacterium Thermus thermophilus. FEMS Micriobiol Lett 123, 55-62.
    • (1994) FEMS Micriobiol Lett , vol.123 , pp. 55-62
    • Kosuge, T.1    Tabata, K.2    Hoshino, T.3
  • 27
    • 0025245767 scopus 로고
    • Organization of the bacterial chromosome
    • Krawiec, S. & Riley, M. (1990). Organization of the bacterial chromosome. Microbiol Rev 54, 502-539.
    • (1990) Microbiol Rev , vol.54 , pp. 502-539
    • Krawiec, S.1    Riley, M.2
  • 28
    • 0028802662 scopus 로고
    • Gene products of Escherichia coli: Sequence comparison and common ancestries
    • Labedan, B. & Riley, M. (1995). Gene products of Escherichia coli: sequence comparison and common ancestries. Mol Biol Evol 12, 980-987.
    • (1995) Mol Biol Evol , vol.12 , pp. 980-987
    • Labedan, B.1    Riley, M.2
  • 29
    • 0031014025 scopus 로고    scopus 로고
    • Cloning and characterization of two groESL operons of Rhodobacter sphaeroides: Transcriptional regulation of the heat-induced groESL operon
    • Lee, W. T., Terleshy, K. C. & Tabita, F. R. (1997). Cloning and characterization of two groESL operons of Rhodobacter sphaeroides: transcriptional regulation of the heat-induced groESL operon. J Bacteriol 179, 487-495.
    • (1997) J Bacteriol , vol.179 , pp. 487-495
    • Lee, W.T.1    Terleshy, K.C.2    Tabita, F.R.3
  • 30
    • 0027751336 scopus 로고
    • The chromosomal DNA of Streptomyces lividans 66 is linear
    • Lin, Y., Kieser, H. M., Hopwood, D. A. & Chen, C. W. (1993). The chromosomal DNA of Streptomyces lividans 66 is linear. Mol Microbiol 10, 923-933.
    • (1993) Mol Microbiol , vol.10 , pp. 923-933
    • Lin, Y.1    Kieser, H.M.2    Hopwood, D.A.3    Chen, C.W.4
  • 33
    • 0026721057 scopus 로고
    • Isolation and characterization of the nifUSVW-rpoN gene cluster from Rhodobacter sphaeroides
    • Meijer, W. G. & Tabita, R. (1992). Isolation and characterization of the nifUSVW-rpoN gene cluster from Rhodobacter sphaeroides. J Bacteriol 174, 3855-3866.
    • (1992) J Bacteriol , vol.174 , pp. 3855-3866
    • Meijer, W.G.1    Tabita, R.2
  • 35
    • 0026506213 scopus 로고
    • Identification of intrinsic high-level resistance to rare-earth oxides and oxyanions in members of the class Proteobacteria: Characterization of tellurite, selenite, and rhodium sesquioxide reduction in Rhodobacter sphaeroides
    • Moore, M. D. & Kaplan, S. (1992). Identification of intrinsic high-level resistance to rare-earth oxides and oxyanions in members of the class Proteobacteria: characterization of tellurite, selenite, and rhodium sesquioxide reduction in Rhodobacter sphaeroides. J Bacteriol 174, 1505-1514.
    • (1992) J Bacteriol , vol.174 , pp. 1505-1514
    • Moore, M.D.1    Kaplan, S.2
  • 36
    • 0026756701 scopus 로고
    • Rhodobacter sphaeroides rdxA, a homolog of Rhizobium meliloti fixG, encodes a membrane protein which may bind cytoplasmic [4Fe-4S] clusters
    • Neidle, E. L. & Kaplan, S. (1992). Rhodobacter sphaeroides rdxA, a homolog of Rhizobium meliloti fixG, encodes a membrane protein which may bind cytoplasmic [4Fe-4S] clusters. J Bacteriol 174, 6444-6454.
    • (1992) J Bacteriol , vol.174 , pp. 6444-6454
    • Neidle, E.L.1    Kaplan, S.2
  • 37
    • 0027168245 scopus 로고
    • Expression of the Rhodobacter sphaeroides hemA and hemT genes encoding two 5-aminolevulinic acid synthase isozymes
    • Neidle, E. L. & Kaplan, S. (1993). Expression of the Rhodobacter sphaeroides hemA and hemT genes encoding two 5-aminolevulinic acid synthase isozymes. J Bacteriol 175, 2292-2303.
    • (1993) J Bacteriol , vol.175 , pp. 2292-2303
    • Neidle, E.L.1    Kaplan, S.2
  • 38
    • 0028964648 scopus 로고
    • The Rhizobium meliloti groELc locus is required for regulation of early nod genes by the transcription activator NodD
    • Ogawa, J. & Long, S. R. (1995). The Rhizobium meliloti groELc locus is required for regulation of early nod genes by the transcription activator NodD. Genes Dev 9, 714-729.
    • (1995) Genes Dev , vol.9 , pp. 714-729
    • Ogawa, J.1    Long, S.R.2
  • 39
    • 0025976058 scopus 로고
    • Analysis of the Serratia marcescens proBA operon and feedback control of proline biosynthesis
    • Omori, K., Suzuku, S., Imai, Y. & Komatsubara, S. (1991). Analysis of the Serratia marcescens proBA operon and feedback control of proline biosynthesis. J Gen Microbiol 137, 509-517.
    • (1991) J Gen Microbiol , vol.137 , pp. 509-517
    • Omori, K.1    Suzuku, S.2    Imai, Y.3    Komatsubara, S.4
  • 40
    • 0028270817 scopus 로고
    • Nodulating ability of Rhizobium tropici is conditioned by a plasmid-encoded citrate synthase
    • Pardo, M. A., Lagunez, J., Miranda, J. & Martinez, E. (1994). Nodulating ability of Rhizobium tropici is conditioned by a plasmid-encoded citrate synthase. Mol Microbiol 11, 315-321.
    • (1994) Mol Microbiol , vol.11 , pp. 315-321
    • Pardo, M.A.1    Lagunez, J.2    Miranda, J.3    Martinez, E.4
  • 41
    • 0027133165 scopus 로고
    • Functions of the gene products of Escherichia coli
    • Riley, M. (1993). Functions of the gene products of Escherichia coli. Microbiol Rev 57, 862-952.
    • (1993) Microbiol Rev , vol.57 , pp. 862-952
    • Riley, M.1
  • 42
    • 0029157238 scopus 로고
    • A physical genome map of the Burkholderia cepacia type strain
    • Rodley, P. D., Romling, U. & Burkhard, T. (1995). A physical genome map of the Burkholderia cepacia type strain. Mol Micriobiol 17, 57-67.
    • (1995) Mol Micriobiol , vol.17 , pp. 57-67
    • Rodley, P.D.1    Romling, U.2    Burkhard, T.3
  • 44
    • 0024284205 scopus 로고
    • Cloning and characterization of a gene from Rhizobium meliloti 2011 coding for ribosomal protein S1
    • Schnier, J., Thamm, S., Lurz, R., Hussain, A., Faist, G. & Dobrinski, B. (1988). Cloning and characterization of a gene from Rhizobium meliloti 2011 coding for ribosomal protein S1. Nucleic Acids Res 16, 3075-3089.
    • (1988) Nucleic Acids Res , vol.16 , pp. 3075-3089
    • Schnier, J.1    Thamm, S.2    Lurz, R.3    Hussain, A.4    Faist, G.5    Dobrinski, B.6
  • 45
    • 10144228402 scopus 로고    scopus 로고
    • Organizational characteristics and information content of an archael genome: 156 kb of sequence from Sulfolobus solfataricus P2
    • Sensen, C. W., Klenk, H., Singh, R. K. & 10 other authors (1996). Organizational characteristics and information content of an archael genome: 156 kb of sequence from Sulfolobus solfataricus P2. Mol Microbiol 22, 175-191.
    • (1996) Mol Microbiol , vol.22 , pp. 175-191
    • Sensen, C.W.1    Klenk, H.2    Singh, R.K.3
  • 46
    • 0026326008 scopus 로고
    • Electrophoretic separation of the three Rhizobium meliloti replicons
    • Sobral, B. W. S., Honeycutt, R. J., Atherly, A. G. & McClelland, M. (1991). Electrophoretic separation of the three Rhizobium meliloti replicons. J Bacteriol 173, 5173-5180.
    • (1991) J Bacteriol , vol.173 , pp. 5173-5180
    • Sobral, B.W.S.1    Honeycutt, R.J.2    Atherly, A.G.3    McClelland, M.4
  • 47
    • 0024443488 scopus 로고
    • Physical and genetic mapping of the Rhodobacter sphaeroides 2.4.1 genome: Presence of two unique circular chromosomes
    • Suwanto, A. & Kaplan, S. (1989). Physical and genetic mapping of the Rhodobacter sphaeroides 2.4.1 genome: presence of two unique circular chromosomes. J Bacteriol 171, 5850-5859.
    • (1989) J Bacteriol , vol.171 , pp. 5850-5859
    • Suwanto, A.1    Kaplan, S.2
  • 48
    • 0026545917 scopus 로고
    • Chromosome transfer in Rhodobacter sphaeroides: Hfr formation and genetic evidence for two unique circular chromosomes
    • Suwanto, A. & Kaplan, S. (1992). Chromosome transfer in Rhodobacter sphaeroides: Hfr formation and genetic evidence for two unique circular chromosomes. J Bacteriol 174, 1135-1145.
    • (1992) J Bacteriol , vol.174 , pp. 1135-1145
    • Suwanto, A.1    Kaplan, S.2
  • 49
    • 0026621396 scopus 로고
    • Uniform designation for genes of the Calvin-Benson-Bassham reductive pentose phosphate pathway of bacteria
    • Tabita, F. R., Gibson, J. L., Bowien, B., Dijkhuizen, L. & Meijer, W. G. (1992). Uniform designation for genes of the Calvin-Benson-Bassham reductive pentose phosphate pathway of bacteria. FEMS Microbiol Lett 99, 107-110.
    • (1992) FEMS Microbiol Lett , vol.99 , pp. 107-110
    • Tabita, F.R.1    Gibson, J.L.2    Bowien, B.3    Dijkhuizen, L.4    Meijer, W.G.5
  • 50
    • 0021709151 scopus 로고
    • The phylogeny of the purple bacteria: The alpha subdivision
    • Woese, C. R., Stackebrandt, E., Weisburg, W. G. & 8 other authors (1984). The phylogeny of the purple bacteria: the alpha subdivision. Syst Appl Microbiol 5, 315-326.
    • (1984) Syst Appl Microbiol , vol.5 , pp. 315-326
    • Woese, C.R.1    Stackebrandt, E.2    Weisburg, W.G.3
  • 52
    • 0027320777 scopus 로고
    • Comparison of genetic maps for two Leptospira interrogans serovars provides evidence for two chromosomes and intraspecies heterogeneity
    • Zuerner, R. L., Herrmann, J. L. & Saint Girons, I. (1993). Comparison of genetic maps for two Leptospira interrogans serovars provides evidence for two chromosomes and intraspecies heterogeneity. J Bacteriol 175, 5445-5451.
    • (1993) J Bacteriol , vol.175 , pp. 5445-5451
    • Zuerner, R.L.1    Herrmann, J.L.2    Saint Girons, I.3


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