Length variation of CAG/CAA triplet repeats in 50 genes among 16 inbred mouse strains

Gene

Volumn 349, Issue , 2005, Pages 107-119

  Ogasawara, Michihiro ^a,e   Imanishi, Tadashi ^b   Moriwaki, Kazuo ^c   Gaudieri, Silvana ^d   Tsuda, Hiroshi ^e   Hashimoto, Hiroshi ^e   Shiroishi, Toshihiko ^f   Gojobori, Takashi ^a   Koide, Tsuyoshi ^f,g  

^a NATIONAL INSTITUTE OF GENETICS   (Japan)

^b NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

^c RIKEN BIORESOURCE CENTER   (Japan)

^d UNIVERSITY OF WESTERN AUSTRALIA   (Australia)

^e JUNTENDO UNIVERSITY   (Japan)

^f NATIONAL INSTITUTE OF GENETICS   (Japan)

^g GRADUATE UNIVERSITY FOR ADVANCED STUDIES   (Japan)

Author keywords

Evolution; Functional constraint; Poly glutamines; Wild mice

Indexed keywords

POLYGLUTAMINE;

ALLELE; ARTICLE; CODON; DATA BASE; GENE LOCUS; GENETIC VARIABILITY; INBRED STRAIN; LONG TERMINAL REPEAT; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; TRINUCLEOTIDE REPEAT; UNINDEXED SEQUENCE;

EID: 17044430188     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2004.11.050     Document Type: Article

References (39)

1. S.F. Altschul, W. Gish, W. Miller, E.W. Myers, and D.J. Lipman Basic local alignment search tool J. Mol. Biol. 215 1990 403 410
2. S.E. Andrew The relationship between trinucleotide (CAG) repeat length and clinical features of Huntington's disease Nat. Genet. 4 1993 398 403
3. M. Chung, L.P.W. Ranum, L.A. Duvick, A. Servadio, H.Y. Zoghbi, and H.T. Orr Evidence for a mechanism predisposing to intergenerational CAG repeat instability in spinocerebellar ataxia type 1 Nat. Genet. 5 1993 254 258
4. F.S. Collins, M.S. Guyer, and A. Chakravarti Variation on a theme: cataloging human DNA sequence variation Science 278 1997 1580 1581
5. Dom sex reversal Nat. Genet. 6 1994 245 250
6. P. Dehal Human chromosome 19 and related regions in mouse: conservative and lineage-specific evolution Science 293 2001 104 111
7. M. Duyao Trinucleotide repeat length instability and age of onset in Huntington's disease Nat. Genet. 4 1993 387 392
8. R.D. Emes, L. Goodstadt, E.E. Winter, and C.P. Ponting Comparison of the genomes of human and mouse lays the foundation of genome zoology Hum. Mol. Genet. 12 7 2003 701 709
9. T. Furuse Genetic diversity underlying capsaicin intake in the Mishima battery of mouse strains Brain Res. Bull. 57 2002 49 55
10. H.P. Gerber Transcriptional activation modulated by homopolymeric glutamine and proline stretches Science 263 1994 808 811
11. T.C. Glenn, W. Stephan, H. Dessauer, and M.J. Braun Allelic diversity in alligator microsatellite loci is negatively correlated with GC content of flanking sequences and evolutionary conservation of PCR amplifiability Mol. Biol. Evol. 13 1996 1151 1154
12. J.M. Hancock, E.A. Worthey, and M.F. Santibanez-Koref A role for selection in regulating the evolutionary emergence of disease-causing and other coding CAG repeats in human and mice Mol. Biol. Evol. 18 6 2001 1014 1023
13. Y. Ina ODEN: a program package for molecular evolutionary analysis and database search of DNA and amino acid sequences Comput. Appl. Biosci. 10 1 1994 11 12
14. T. Koide A new inbred strain JF1 established from Japanese fancy mouse carrying the classic piebald allele Mamm. Genome 9 1998 15 619
15. T. Koide, K. Moriwaki, K. Ikeda, H. Niki, and T. Shiroishi Multi-phenotype behavioral characterization of inbred strains derived from wild stocks of Mus musculus Mamm. Genome 11 2000 664 670
16. S. Kurtz, J.V. Choudhuri, E. Ohlebusch, C. Schleiermacher, J. Stoye, and R. Giegerich REPuter: the manifold applications of repeat analysis on a genomic scale Nucleic Acids Res. 29 2001 4633 4642
17. F. Matesanz, and A. Alcina Glutamine and tetrapeptide repeat variations affect the biological activity of different mouse interleukin-2 alleles Eur. J. Immunol. 26 1996 1675 1682
18. J.P. McDonald 129-derived strains of mice are deficient in DNA polymerase iota and have normal immunoglobulin hypermutation J. Exp. Med. 198 2003 635 643
19. R. Miesfeld, P.J. Godowski, B.A. Maler, and K.R. Yamamoto Glucocorticoid receptor mutants that define a small region sufficient for enhancer activation Science 236 1987 423 427
20. M.J. Nauta, and F.J. Weissing Constraints on allele size at microsatellite loci: implications for genetic differentiation Genetics 143 1996 1021 1032
21. M. Nei Genetic distance between populations Am. Natur. 106 1972 283 292
22. M. Nei Analysis of gene diversity in subdivided populations Proc. Natl. Acad. Sci. U. S. A. 70 1973 3321 3323
23. M. Nei, and T. Gojobori Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions Mol. Biol. Evol. 3 1986 418 426
24. H.T. Orr Expansion of an unstable trinucleotide CAG repeat in spinocerebellar ataxia type 1 Nat. Genet. 4 3 1993 221 226
25. D. Penny, and M.D. Hendy Testing methods of evolutionary tree construction Cladistics 1 1985 266 278
26. M.F. Perutz, T. Johnson, M. Suzuki, and J.T. Finch Glutamine repeats as polar zippers: their possible role in inherited neurodegenerative diseases Proc. Natl. Acad. Sci. U. S. A. 91 1994 5355 5358
27. S. Pulst Moderate expansion of a normally biallelic trinucleotide repeat in spinocerebellar ataxia type 2 Nat. Genet. 14 1996 269 276
28. N. Risch, and K. Merikangas The future of genetic studies of complex human diseases Science 273 1996 1516 1517
29. C.A. Ross Intranuclear neuronal inclusions: a common pathogenic mechanism for glutamine-repeat neurodegenerative diseases? Neuron 19 1997 1147 1150
30. N. Saitou, and M. Nei The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol. Biol. Evol. 4 1987 406 425
31. C. Schlotterer Evolutionary dynamics of microsatellite DNA Chromosoma 109 2000 365 371
32. M.D. Schug, C.M. Hutter, K.A. Wetterstrand, M.S. Gaudetts, T.F. Mackay, and C.F. Aquadro The mutation rates of di-, tri- and tetranucleotide repeats in Drosophila melanogaster Mol. Biol. Evol. 15 1998 1751 1760
33. R.R. Sinden Neurodegenerative diseases. Origins of instability Nature 411 2001 757 758
34. R.G. Snell Relationship between trinucleotide repeat expansion and phenotypic variation in Huntington's disease Nat. Genet. 4 1993 393 397
35. N. Takezaki, A. Rzhetsky, and M. Nei Phylogenetic test of the molecular clock and linearized trees Mol. Biol. Evol. 12 5 1995 823 833
36. J.D. Thompson, D.G. Higgins, and T.J. Gibson CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice Nucleic Acids Res. 22 1994 4673 4680
37. G. Toth, Z. Gaspari, and J. Jurka Microsatellites in different eukaryotic genome: survey and analysis Genome Res. 10 2000 967 981
38. C.M. Wade The mosaic structure of in the laboratory mouse genome Nature 420 2002 574 578
39. J.L. Weber Informativeness of human (dC-dA)n.(dG-dT)n polymorphisms Genomics 7 1990 524 530