Substrate specificity and molecular cloning of the lily endo-β-mannosidase acting on N-glycan

Journal of Biochemistry

Volumn 137, Issue 1, 2005, Pages 87-93

  Sasaki, Akiko ^a   Ishimizu, Takeshi ^a   Hase, Sumihiro ^a  

^a OSAKA UNIVERSITY   (Japan)

Author keywords

Endo mannosidase; Mannosidase; N glycan; Plant; Processing

Indexed keywords

AMINE; BETA MANNOSIDASE; COMPLEMENTARY DNA; GLYCAN; MANNOSE; N ACETYLGLUCOSAMINE; POLYPEPTIDE;

AMINO ACID SEQUENCE; ARTICLE; ENZYME ACTIVITY; ENZYME PURIFICATION; ENZYME SPECIFICITY; FLOWER; HYDROLYSIS; LILY; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PROTEIN DEGRADATION; PROTEIN EXPRESSION; PROTEIN PROCESSING; SEQUENCE ANALYSIS;

AMINO ACID SEQUENCE; CLONING, MOLECULAR; LILIUM; MANNOSIDASES; MOLECULAR SEQUENCE DATA; PHYLOGENY; SUBSTRATE SPECIFICITY;

ARABIDOPSIS THALIANA; LILIUM; LILIUM LONGIFLORUM;

EID: 17044400268     PISSN: 0021924X     EISSN: None     Source Type: Journal    
DOI: 10.1093/jb/mvi008     Document Type: Article

References (26)

1. Takahashi, N. (1977) Demonstration of a new amidase acting on glycopeptides. Biochem. Biophys. Res. Commun. 76, 1194-1201
2. Muramatsu, T. (1971) Demonstration of an endo-glycosidase acting on a glycoprotein. J. Biol. Chem. 246, 5535-5537
3. Sasaki, A., Yamagishi, M., Mega, T., Norioka, S., Natsuka, S., and Hase, S. (1999) Partial purification and characterization of a novel endo-β-mannosidase acting on N-linked sugar chains from Lilium longiflorum Thunb. J. Biochem. 125, 363-367
4. Ishimizu, T., Sasaki, A., Okutani, S., Maeda, M., Yamagishi, M., and Hase, S. (2004) Endo-β-mannosidase, a plant enzyme actiong on N-glycan: purification, molecular cloning, and characterization. J. Biol. Chem. 279, 38555-38562
5. Ishimizu, T., Mitsukami, Y., Shinkawa, Y., Natsuka, S., Hase, S., Miyagi, M., Sakiyama, F., and Norioka, S. (1999) Presence of asparagines-linked N-acetylglucosamine and chitobiose in Pyrus pyrifolia S-RNases associated with gametophytic self-incompatibility. Eur. J. Biochem. 263, 624-634
6. Oku, H., Hase, S., and Ikenaka, T. (1990) Separation of oligomannose-type sugar chains having one to five mannose residues by high-performance liquid chromatography as their pyridylamino derivatives. Anal. Biochem. 185, 331-334
7. Yanagida, K., Ogawa, H., Omichi, K., and Hase, S. (1998) Introduction of a new scale into reversed-phase HPLC of pyridylamino sugar chains for atructural assignment. J. Chromatogr. A 800, 187-198
8. Hase, S. (1994) High-performance liquid chromatography of pyridylaminated saccharides. Methods Enzymol. 230, 225-237
9. Nakakita, S., Ama, D., Natsuka, S., and Hase, S. (2002) Analysis of oligosaccharides of glycoproteins in polyacrylamide gel. Anal. Biochem. 303, 206-209
10. Ishimizu, T., Shinkawa, T., Sakiyama, F., and Norioka, S. (1998) Primary structural features of rosaceous S-RNases associated with gametophytic self-incompatibility. Plant Mol. Biol. 37, 931-941
11. Yamagishi, M., Ishimizu, T., Natsuka, S., and Hase, S. (2002) Co(II)-regulated substrate specificity of cytosolic (-mannosidase. J. Biochem. 132, 253-2561
12. Nakakita, S., Menon, K.K., Natsuka, S., Ikenaka, K., and Hase, S. (1999) β1-4Galactosyltransferase activity of mouse brain as revealed by analysis of brain-specific complex-type N-linked sugar chains. J. Biochem. 126, 1161-1169
13. Obayashi, T., Okegawa, T., Sasaki-Sekimoto, Y., Shimada, H., Masuda, T., Asamizu, E., Nakamura, Y., Shibara, D., Tabata, S., Takamiya, K., and Ohta, H. (2004) Distinctive features of plant organs characterized by global analysis of gene expression in Arabidopsis. DNA Res. 11, 11-25
14. Boisson, M., Gomord, V., Audran, C., Berger, N., Dubreucq, B., Granier, F., Lerouge, P., Faye, L., Caboche, M. and Lepiniec, L. (2001) Arabidopsis glucosidase I mutants reveal a critical role of N-glycan trimming in seed development. EMBO J. 20, 1010-1019
15. Thompson, J.D., Higgins, D.G., and Gibson, T.J. (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680
16. Kikuchi, S., Satoh, K., Nagata, T., Kawagashira, N., Doi, K., Kishimoto, N., Yazaki, J., Ishikawa, M., Yamada, H., Ooka, H., Hotta, I., Kojima, K., Namiki, T., Ohneda, E., Yahagi, W., Suzuki, K., Li, C.J., Ohtsuki, K., Shishiki, T., Otomo, Y., Murakami, K., Iida, Y., Sugano, S., Fujimura, T., Suzuki, Y., Tsunoda, Y., Kurosaki, T., Kodama, T., Masuda, H., Kobayashi, M., Xie, Q., Lu, M., Narikawa, R., Sugiyama, A., Mizuno, K., Yokomizo, S., Niikura, J., Ikeda, R., Ishibiki, J., Kawamata, M., Yoshimura, A., Miura, J., Kusumegi, T., Oka, M., Ryu, R., Ueda, M., Matsubara, K., Kawai, J., Carninci, P., Adachi, J., Aizawa, K., Arakawa, T., Fukuda, S., Kara, A., Hashizume, W., Hayatsu, N., Imotani, K., Ishii, Y., Itoh, M., Kagawa, I., Kondo, S., Konno, H., Miyazaki, A., Osato, N., Ota, Y., Saito, R., Sasaki, D., Sato, K., Shibata, K., Shinagawa, A., Shiraki, T., Yoshino, M., Hayashizaki, Y., Yasunishi, A.; Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN (2003) Collection, mapping, and annotation of over 28, 000 cDNA clones from japonica rice. Science 301, 376-379
17. Saitou, N. and Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425
18. Chen, H., Leipprandt, J.R., Traviss, C.E., Sopher, B.L., Jones, M.Z., Cavanagh, K.T., and Friderici, K.H. (1995) Molecular cloning and characterization of bovine β-mannosidase. J. Biol. Chem. 270, 3841-3848
19. Leipprandt, J.R., Kraemer, S.A., Haithcock, B.E., Chen, H., Dyme, J.L., Cavanagh, K.T., Friderici, K.H., and Jones, M.Z. (1996) Caprine β-mannosidase: Sequencing and characterization of the cDNA and identification of the molecular defect of caprine β-mannosidosis. Genomics 37, 51-56
20. Alkhayat, A.H., Kraemer, S.A., Leipprandt, J.R., Macek, M., Kleijer, W.J., and Friderici, K.H. (1998) Human β-mannosidase cDNA characterization and first identification of a mutation associated with human β-mannosidosis. Hum. Mol. Genet. 7, 75-83
21. Beccari, T., Bibi, L., Stinchi, S., Stirling, J.L., and Orlacchio, A. (2001) Mouse beta-mannosidase: cDNA cloning, expression and chromosomal localization. Biosci. Rep. 21, 315-323
22. Takada, G., Kawaguchi, T., Kaga, T., Sumitani, J., and Arai, M. (1999) Cloning and sequencing of β-mannosidase gene from Aspergillus aculeatus No. F-50. Biosci. Biotechnol. Biochem. 63, 206-209
23. Ademark, P., de Vries, R.R., Hägglund, P., Stålbrand, H., and Visser, J. (2001) Cloning and characterization of Aspergillus niger genes encoding an β-galactosidase and a β-mannosidase involved in galactomannan degradation. Eur. J. Biochem. 268, 2982-2990
24. Parker, K.N., Chhabra, S.R., Lam, D., Callen, W., Duffaud, G.D., Snead, M.A., Short, J.M., Mathur, E.J., and Kelly, R.M. (2001) Galactomannanases Man2 and Man5 from Thermotoga species: growth physiology on galactomannans, gene sequence analysis, and biochemical properties of recombinant enzymes. Biotechnol. Bioeng. 75, 322-333
25. Béki, E., Nagy, I., Vanderleyden, J., Jäger, S., Kiss, L., Fülöp, L., Hornok, L., and Kukolya, J. (2003) Cloning and heterologous expression of a β-mannosidase (EC 3.2.1.25)-encoding gene from Thermobifida fusca TM51. Appl. Environ. Microbiol. 69, 1944-1952
26. Stoll, D., Stålbrand, H., and Warren, A.J. (1999) Mannan-degrading enzymes from Cellulomonas fimi. Appl. Environ. Microbiol. 65, 2598-2605