Mannan-degrading enzymes from Cellulomonas fimi

Applied and Environmental Microbiology

Volumn 65, Issue 6, 1999, Pages 2598-2605

  Stoll, Dominik ^a   Stålbrand, Henrik ^a,b   Warren, R Antony J ^a  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^b LUND UNIVERSITY   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME; BETA MANNOSIDASE; MANNAN;

AMINO ACID ANALYSIS; ARTICLE; BACTERIAL GENETICS; CELLULOMONAS; CELLULOMONAS FIMI; ENZYME ANALYSIS; ENZYME ISOLATION; ENZYME STRUCTURE; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; SEQUENCE HOMOLOGY;

ACTINOBACTERIA (CLASS); BACTERIA (MICROORGANISMS); CELLULOMONAS FIMI; ESCHERICHIA COLI; MAMMALIA; PROKARYOTA; UNCULTURED ACTINOMYCETE;

EID: 0039180039     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.65.6.2598-2605.1999     Document Type: Article

References (66)

1. Alkhayat, A. H., S. A. Kraemer, J. R. Leipprandt, M. Macek, W. J. Kleijer, and K. H. Friderici. 1938. Human β-mannosidase cDNA characterization and first identification of a mutation associated with human β-mannosidosis. Hum. Mol. Genet. 7:75-83.
2. Arcand, N., D. Kluepfel, F. W. Paradis, R. Morosoli, and F. Sharek. 1993. β-Mannanase of Streptomyces lividans 66: cloning and DNA sequencing of the manA gene and characterization of the enzyme. Biochem. J. 290:857-863.
3. Bauer, M. W., E. J. Bylina, R. V. Swanson, and R. M. Kelly. 1996. Comparison of a β-glucosidase and a β-mannosidase from the hyperthermophilic archaeon Pyrococcus furiosus. J. Biol. Chem. 271:23749-23755.
4. Béguin, P., N. R. Gilkes, D. G. Kilburn, R. C. Miller, Jr., G. P. O'Neill, and R. A. J. Warren. 1987. Cloning of cellulase genes. Crit. Rev. Biotechnol. 6:129-162.
5. Béguin, P., and M. Lemaire. 1996. The cellulosome: an exocellular, multiprotein complex specialized in cellulose degradation. Crit. Rev. Biochem. Mol. Biol. 3:201-236.
6. Beveridge, T. J., P. H. Pouwels, M. Sars, A. Kotiranta, K. Lounatma, K. Kari, E. Keruso. M. Haapasolo, E. M. Egelseer, I. Scocher, U. B. Sleytr, L. Morelli, M.-L. Callegari, J. F. Nomellini, W. H. Bingle, J. Smit. E. Leibovitz, M. Lemaire, I. Miras, S. Salamitou, P. Beguin, H. Ohayon, P. Gounon, M. Matuschek, K. Sahm, H. Bahl, R. Grogono-Thomas, J. Dworkin, M. J. Blaser, R. M. Woodland, D. G. Newell, M. Kessel, and S. F. Koval. 1997. Function of S-layers. FEMS Microbiol. Rev. 20:99-149.
7. Black, G. W., G. P. Hazlewood, S. J. Millward-Sadler, J. I. Laurie, and H. J. Gilbert. 1995. A modular xylanase containing a novel non-catalytic xylan-specific binding domain. Biochem. J. 307:191-195.
8. Bolam, D. N., N. Hughes, R. Virden, J. H. Lakey, G. P. Hazlewood, B. Henrissat, K. L. Braithwaite, and H. J. Gilbert. 1996. Mannanase A from Pseudomonas fluorescens subsp. cellulosa is a retaining glycosyl hydrolase in which E12 and E320 are the putative catalytic residues. Biochemistry 35: 16195-16204.
9. Braithwaite, K. L., G. W. Black, G. P. Hazlewood, B. R. Ali, and H. J. Gilbert. A non-modular endo-β-mannanase from Pseudomona? fluorescens subsp. cellulosa. Biochem. J. 305:1005-1010.
10. Bray, M. R., A. L. Creagh, H. G. Damude, N. R. Gilkes, C. A. Haynes. E. Jervis, D. G. Kilburn, A. M. MacLeod, A. Meinke, R. C. Miller, Jr., D. R. Rose, H. Shen, P. Tomme, D. Tull, A. White, S. G. Withers, and R. A. J. Warren. 1996. β-1,4-Glycanases of Cellulomonas fimi: families, mechanisms, and kinetics. ACS (Am. Chem. Soc.) Symp. Ser. 655:64-84.
11. Chen, H., J. R. Leipprandt, C. E. Travis, B. L. Sopher, M. Z. Jones, K. T. Cavanagh, and K. H. Friderici. 1995. Molecular cloning and characterization of bovine β-mannosidase. J. Biol. Chem. 270:3841-3848.
12. Clarke, J. H., K. Davidson, H. J. Gilbert, C. M. G. A. Fontes, and G. P. Hazlewood. 1996. A modular xylanase from mesophilic: Cellulomonas fimi contains the same cellulose-binding and thermostabilising domains as xylanases from thermophilic bacteria. FEMS Microbiol. Le:t. 139:27-35.
13. Clarke, J. H., J. I. Laurie, H. J. Gilbert, and G. P. Hazlewood. 1991. Multiple xylanases of Cellulomonas fimi are encoded by distinct genes. FEMS Microbiol. Lett. 83:305-310.
14. Duffaud, G. D., C. M. McCutchen, P. Leduc, K. N. Parker, and R. M. Kelly. 1997. Purification and characterization of extremely thermostable β-mannanase, β-mannosidase, and α-galactosidase from the hyperthermophilic eubacterium Thermotoga neopolitana 5068. Appl. Environ. Microbiol. 63: 169-177.
15. Duran, P., P. Lehn, I. Callebaut, S. Fabrega, B. Henrissat, and J.-P. Mornon. 1997. Active-site motifs of lysosomal acid hydrolases: invariant features of clan GH-A glycosyl hydrolases deduced from hydrophobic cluster analysis. Glycobiology 7:277-284.
16. Egelseer, E. M., K. Leitner, M. Jarosch, C. Hotzy, S. Zayni, U. B. Sleytr, and M. Sara. 1998. The S-layer proteins of two Bacillus stearothermophilus wild-type strains are bound via their N-terminal region to a secondary cell wall polymer of identical composition. J. Bacteriol. 180:1488-1495.
17. Estrada, P., I. Mata, J. M. Dominguez, M. P. Castillon, and C. Acebal. 1990. Kinetic mechanism of β-glucosidase from Trichoderma reesei QM 9414. Biochim. Biophys. Acta 1033:298-304.
18. Fanutti, C. T. Ponyi, G. W. Black, G. P. Hazlewood, and H. J. Gilbert. 1995. The conserved non-catalytic 40-residue sequence in cellulases and hemicellulases from anaerobic fungi functions as a protein docking domain. J. Biol. Chem. 270:29314-29322.
19. Fujino, T., P. Béguin, and J.-P. Aubert. 1993. Organization of a Clostridium thermocellum gene cluster encoding the cellulosomal scaffolding protein CipA and a protein possibly involved in the attachment of the cellulosome to the cell surface. J. Bacteriol. 175:1891-1899.
20. Gherardini, F., M. Babcock, and A. Salyers. 1985. Purification and characterization of two α-galactosidases associated with the catabolism of guar gum and other β-galactosides by Bacteroides ovatus. J. Bacteriol. 161:500-506.
21. Gibbs, M. D., A. U. Elinder, R. A. Reeves, and P. L Bergquist. 1996. Sequencing, cloning and expression of a β-1,4-mannanase gene, manA, from the extremely thermophilic anaerobic bacterium, Caldicellulosiruptor RT8B.4. FEMS Microbiol. Lett. 141:37-43.
22. Gilkes, N. R., D. G. Kilburn, R. C. Miller, Jr., and R. A. J. Warren. 1989 Structural and functional analysis of a bacterial cellulase by proteolysis. J. Biol. Chem. 264:17802-17808.
23. Gilkes, N. R., R. A. J. Warren, R. C. Miller, Jr., and D. G. Kilburn. 1988. Precise excision of the cellulose-binding domain from two Cellulomonas fimi cellulases by a homologous protease and the effects on catalysis. J. Biol. Chem. 263:10401-10407.
24. Grodber, J., and J. J. Dunn. 1988. ompT encodes the Escherichia coli outer membrane protease that cleaves T7 RNA polymerase during purification. J. Bacteriol. 170:1245-1253.
25. Harjunpaa, V., A. Teleman, M. Siika-Aho, and T. Drakenberg. 1995. Kinetic and stereochemical studies of mannooligosaccharide hydrolysis catalyzed by β-mannanases from Trichoderma reesei. Eur. J. Biochem. 234:278-283.
26. Henrissat, B. 1990. A classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem. J. 280:304-316.
27. Henrissat, B., and A. Bairoch. 1993. New families in the classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem. J. 293:781-788.
28. Henrissat, B., and A. Bairoch. 1996. Updating the sequence based classification of glycosyl hydrolases. Biochem. J. 316:695-696.
29. Henrissat, B., I. Callebaut, S. Fabrega, P. Lehn, J.-P. Mornon, and G. Davies. 1995. Conserved catalytic machinery and the prediction of a common fold for several families of glycosyl hydrolases. Proc. Natl. Acad. Sci. USA 92:7090-7094.
30. Henrissat, B., T. T. Teeri, and R. A. J. Warren. 1998. A scheme for designating enzymes that hydrolase the polysaccharides in the cell walls of plants. FEBS Lett. 425:352-354.
31. Hilge, M., S. M. Gloor, W. Rypniewski, O. Saner, T. D. Heightman, W. Zimmerman, K. Winterhalter, and K. Piontek. 1998. High-resolution native and complex structures of thermostable β-mannanase from Thermomonospora fusca - substrate specificity in glycosyl hydrolase family 5. Structure 6:1433-1444.
32. Kallweit, U., K. O. Boernsen, G. M. Kresbach, and H. M. Widmer. 1996. Matrix compatible buffers for analysis of proteins with matrix-assisted laser desorption/ionization mass spectrometry. Rapid Commun. Mass Spectrom. 10:845-849.
33. Kohchi, C., and A. Toh-e. 1986. Cloning of a Candida pelliculosa β-glucosidase gene and its expression in Saccharomyces cerevisiae. Mol. Gen. Genet. 203:89-94.
34. Laemmli, U. K. 1970. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685.
35. Leipprandt, J. R., S. A. Kraemer, B. E. Haithcock, H. Chen, J. L. Dyme. K. H. Friderici, and M. Z. Jones. Caprine β-mannosidase: sequencing and characterization of the cDNA and identification of the molecular defect of caprine β-mannosidosis. Genomics 37:51-56.
36. Lemaire, M., H. Ohajon, P. Gounon, T. Fujino, and P. Béguin. 1995. OlpB, a new outer layer protein of Clostridium thermocellum, and binding of its S-layer-like domains to components of the cell envelope. J. Bacteriol. 177: 2451-2459.
37. Margolles-Clark, E., M. Tenkanen, E. Luonteri, and M. Penttila. 1996. Three α-galactosidase genes of Trichoderma reesei cloned by expression in yeast. Eur. J. Biochem. 240:104-111.
38. McLeary, B. V., F. R. Taravel, and J.-P. Joseleau. 1983. Characterisation of the oligosaccharides produced on hydrolysis of galactomannan with β-D-mannanase. Carbohydr. Res. 118:91-109.
39. Meinke, A., N. R. Gilkes, D. G. Kilburn, R. C. Miller, Jr., and R. A. J. Warren. 1993. Cellulose-binding polypeptides from Cellulomonas fimi: endoglucanase D (CenD), a family A β-1,4-glucanase. J. Bacteriol. 175:1910-1918.
40. Meinke, A., N. R. Gilkes, E. Kwan, D. G. Kilburn, R. C. Miller, Jr., and R. A. J. Warren. 1994. Cellobiohydrolase A (CbhA) from the cellulolytic bacterium Cellulomonas fimi is a β-1,4-exocellobiohydrolase analogous to Trichoderma reesei CBHII. Mol. Microbiol. 12:413-442.
41. Millward-Sadler, S. J., J. Hall, G. W. Black, G. P. Hazlewood, and H. J. Gilbert. 1996. Evidence that the Piromyces gene family encoding endo-1,4-mannanases arose through gene duplication. FEMS Microbiol. Lett. 141: 183-188.
42. Morris, D. D., R. A. Reeves, M. D. Gibbs, D. J. Saul, and P. Bergquist. 1995. Correction of the the β-mannanase domain of the celC pseudogene from Caldocellulosiruptor sacchamlyticus and activity of the gene product on kraft pulp. Appl. Environ. Microbiol. 61:2262-2269.
43. Neustroev, K. N., A. S. Krylov, L. M. Firsov, O. N. Abroskina, and A. Y. Khorlin. 1991. Isolation and properties of β-mannosidase from Aspergillus awamori. Biokhimiya 56:1406-1412.
44. Nielsen, H., J. Engelbrecht, S. Brunak, and G. von Heijne. 1997. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Prot. Eng. 10:1-6.
45. Olabarria, G., J. Carrascosa, M. A. Pedro, and J. Berenguer. 1996. A conserved motif in S-layer proteins is involved in peptidoglycan binding in Thermus thermophilus. 3. Bacteriol. 178:4765-4772.
46. O'Neill, G., S. H. Goh, R. A. J. Warren, D. G. Kilburn, and R. C. Miller, Jr. 1986. Structure of the gene encoding the exoglucanase of Cellulomonas fimi. Gene 44:325-330.
47. Pace, N. C., F. Vajdos, L. Fee, G. Grimsley, and T. Gray. 1995. How to measure and predict the molar absorption coefficient of a protein. Protein Sci. 4:2411-2423.
48. Posci, I., S. A. Taylor, A. C. Richardson, B. V. Smith, and R. G. Price. 1993. Comparison of several new chromogenic galactosides as substrates for various β-D-galactosidases. Biochim. Biophys. Acta 1163:54-60.
49. Puls, J., and J. Schuseil. 1996. Chemistry of hemicelluloses: relationship between hemicellulose structure and enzymes required for hydrolysis, p. 1-28. In M. P. Coughlan and G. P. Hazlewood (ed.), Hemicelluloses and hemicellulases. Portland Press, London, England.
50. Ries, W., C. Hotzy, I. Schocher, U. B. Sleytr, and M. Sagra. 1997. Evidence that the N-terminal part of the S-layer protein from Bacillus stearothemophilus PV72/p2 recognizes a secondary cell wall polymer. J. Bacteriol. 179:3892-3898.
51. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
52. Sandercock, L., A. Meinke, and R. A. J. Warren. 1996. Degradation of cellulases in cultures of Cellulomonas fimi. FEMS Microbiol. Lett. 143:7-12.
53. Sawadago, M., and M. W. van Dyke. 1991. A rapid method for the purification of deprotected oligodeoxynucleotides. Nucleic Acids Res. 19:674.
54. Shen, H., N. R. Gilkes, D. G. Kilburn, R. C. Miller, Jr., and R. A. J. Warren. 1995. Cellobiohydrolase B, a second exocellobiohydrolase from the cellulolytic bacterium Cellulomonas fimi. Biochem. J. 311:67-74.
55. Stålbrand, H., A. Saloheimo, J. Vehmaanpera, B. Henrissat, and M. Penttila. 1995. Cloning and expression in Saccharomyces cerevisiae of a Trichoderma reesei β-mannanase gene containing a cellulose-binding domain. Appl. Environ. Microbiol. 61:1090-1097.
56. Stålbrand, H., M. Siika-Aho, M. Tenkanen, and L. Viikari. 1993. Purification and characterisation of two β-mannanases from Trichoderma reesei. J. Biotechnol. 29:229-242.
57. Stewart, B. J., and J. M. Leatherwood. 1976. Derepressed synthesis of cellulase by Cellulomonas. J. Bacteriol. 128:609-615.
58. Talbot, G., and J. Sygusch. 1990. Purification and characterization of thermostable β-mannanase and α-galactosidase from Bacillus stearothermophilus. Appl. Environ. Microbiol. 56:3505-3510.
59. Tamaru, Y., T. Araki, H. Amagoi, H. Mori, and T. Morishita. 1995. Purification and characterization of an extracellular β-1,4-mannanase from a marine bacterium, Vibrio sp. strain MA-138. Appl. Environ. Microbiol. 61:4454-4458.
60. Teather, R. M., and P. J. Wood. 1982. Use of Congo red-polysaccharide interactions in enumeration and characterization of cellulolytic bacteria from the bovine rumen. Appl. Environ. Microbiol. 43:777-780.
61. Tenkanen, M., M. Makkonen, M. Perttula, L. Viikari, and A. Teleman. 1997. Action of Trichoderma reesei on galactoglucomannan in pine kraft pulp. J. Biotechnol. 57:191-204.
62. Thomas, M. G. 1994. A procedure for second-round differential screening of cDNA libraries. BioTechniques 16:988-989.
63. Wakarchuk, W. W., D. G. Kilburn, R. C. Miller, Jr., and R. A. J. Warren. 1984. β-Glucosidases of Cellulomonas fimi. J. Gen. Microbiol. 130:1385-1389.
64. Wong, W. K. R., B. Gerhard, Z. M. Guo, D. G. Kilburn, R. A. J. Warren, and R. C. Miller, Jr. 1986. Characterisation and structure of an endoglucanase gene cenA of Cellulomonas fimi. Gene 44:315-324.
65. Xiuzhu, D., P. J. Y. M. J. Schyns, and A. J. M. Stams. 1991. Degradation of galactomannan by a Clostridium butyricum strain. Antonie Leewenhoek 60: 109-114.
66. Vague, E., M. Mehak-Zunic, L. Morgan, D. A. Wood, and C. F. Thurston. 1997. Expression of CEL2 and CEL4, two proteins from Agaricus bisporus with similarity to fungal Cellobiohydrolase I and β-mannanase, respectively, is regulated by carbon source. Microbiology 143:239-244.