Characterization of multiple lineages of Tc1-like elements within the genome of the amphibian Xenopus tropicalis

Gene

Volumn 349, Issue , 2005, Pages 187-196

  Sinzelle, Ludivine ^a   Pollet, Nicolas ^a   Bigot, Yves ^b   Mazabraud, André ^a  

^a CNRS   (France)

^b UNIVERSITÉ DE TOURS   (France)

Author keywords

Anoura; Mobile DNA; Repeat; Transposon; Vertebrate

Indexed keywords

AMPHIBIA; ARTICLE; GENETIC CONSERVATION; GENETIC SIMILARITY; GENOME ANALYSIS; GENOMICS; INVERTED TERMINAL REPEAT; MAMMALIAN GENETICS; MOLECULAR BIOLOGY; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SPECIES COMPARISON; TRANSPOSON; XENOPUS TROPICALIS;

EID: 17044392218     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2004.12.023     Document Type: Article

References (31)

1. R.M. Avancini, K.K. Walden, and H.M. Robertson The genomes of most animals have multiple members of the Tc1 family of transposable elements Genetica 98 1996 131 140
2. L. Brezinsky, G.V. Wang, T. Humphreys, and J. Hunt The transposable element Uhu from Hawaiian Drosophila-member of the widely dispersed class of Tc1-like transposons Nucleic Acids Res. 18 1990 2053 2059
3. C. Claudianos, R. Brownlie, R. Russell, J. Oakeshott, and S. Whyard maT-a clade of transposons between mariner and Tc1 Mol. Biol. Evol. 19 2002 2101 2109
4. Z. Cui, A.M. Geurts, G. Liu, C.D. Kaufman, and P.B. Hackett Structure-function analysis of the inverted terminal repeats of the Sleeping Beauty transposon J. Mol. Biol. 318 2002 1221 1235
5. L. Du Pasquier, M.F. Flajnik, C. Guiet, and E. Hsu Methods used to study the immune system of Xenopus (Amphibia, Anura) I. Lefkovits B. Pernis Immunological Methods 1985 Academic Press New-York 426 463
6. G. Frantz, T.G. Loukeris, G. Dialektaki, C.R.L. Thompson, and C. Savakis Mobile Minos elements from Drosophila hydei encode a two-exon transposase with similarity to the paired DNA-binding domain Proc. Natl. Acad. Sci. U. S. A. 91 1994 4746 4750
7. J.L. Goodier, and W.S. Davidson Tc1 transposon-like sequences are widely distributed in salmonids J. Mol. Biol. 241 1994 26 34
8. B. Gottgens, L.M. Barton, D. Grafham, M. Vaudin, and A.R. Green Tdr2, a new zebrafish transposon of the Tc1 family Gene 239 1999 373 379
9. N. Halaimia-Toumi, N. Casse, M.V. Demattei, S. Renault, E. Pradier, Y. Bigot, and M. Laulier The GC-rich transposon Bytmar1 from the deep-sea hydrothermal crab, Bythograea thermydron, may encode three transposase isoforms from a single ORF J. Mol. Evol. 59 2004 747 760
10. J. Heierhorst, K. Lederis, and D. Richter Presence of a member of the Tc1-like transposon family from nematodes and Drosophila within the vasotocin gene of a primitive vertebrate, the Pacific hagfish Eptatretus stouti Proc. Natl. Acad. Sci. U. S. A. 89 1992 6798 6802
11. International Human Genome Sequencing Consortium Initial sequencing and analysis of the human genome Nature 409 2001 860 921
12. Z. Ivics, P.B. Hackett, R.H. Plasterk, and Z. Izsvak Molecular reconstruction of Sleeping Beauty, a Tc1-like transposon from fish, and its transposition in human cells Cell 91 1997 501 510
13. Z. Izsvak, and Z. Ivics Transposable elements for transgenesis and insertional mutagenesis in vertebrates: a contemporary review of experimental strategies Methods Mol. Biol. 260 2004 255 276
14. Z. Izsvak, Z. Ivics, and P.B. Hackett Repetitive elements and their genetic applications in zebrafish Biochem. Cell. Biol. 75 1997 507 523
15. Z. Izsvak, D. Khare, J. Behlke, U. Heinemann, R.H.A. Plasterk, and Z. Ivics Involvement of a bifunctional, paired-like DNA-binding domain and a transpositional enhancer in Sleeping Beauty transposition J. Biol. Chem. 277 2002 34581 34588
16. J.A. Jehle, E. Fritsch, A. Nickel, J. Huber, and H. Backhaus TCI4.7: a novel lepidopteran transposon found in Cydia pomonella granulosis virus Virology 207 1995 369 379
17. J.A. Jehle, A. Nickel, J.M. Vlak, and H. Backhauss Horizontal escape of the novel Tc1-like lepidopteran transposon TCp3.2 into Cydia pomonella granulosisvirus J. Mol. Biol. 46 1998 215 224
18. W.L. Lam, T.S. Lee, and W. Gilbert Active transposition in zebrafish Proc. Natl. Acad. Sci. U. S. A. 93 1996 10870 10875
19. W.L. Lam, P. Seo, K. Robison, S. Virk, and W. Gilbert Discovery of amphibian Tc1-like transposon families J. Mol. Biol. 257 1996 359 366
20. M.J. Leaver A family of Tc1-like transposons from the genomes of fishes and frogs: evidence for horizontal transmission Gene 271 2001 203 214
21. A.R. Lohe, E.N. Moriyama, D.A. Lidholm, and D.L. Hartl Horizontal transmission, vertical inactivation, and stochastic loss of mariner-like transposable elements Mol. Biol. Evol. 12 1995 62 72
22. C. Miskey, Z. Izsvak, R.H.A. Plasterk, and Z. Ivics The Frog Prince: a reconstructed transposon from Rana pipiens with high transpositional activity in vertebrate cells Nucleic Acids Res. 31 2003 6873 6881
23. R.H.A. Plasterk, and H.G.A.M. Van Luenen The Tc1/mariner family of transposable elements N.L. Craig Mobile DNA II 2002 519 531
24. R.H.A. Plasterk, Z. Izsvak, and Z. Ivics Resident aliens, the Tc1/mariner superfamily of transposable elements Trends Genet. 15 1999 326 332
25. H.M. Robertson The mariner transposable element is widespread in insects Nature 362 1993 241 245
26. H.M. Robertson, and M.L. Asplund Bmmar1: a basal lineage of the mariner family of transposable elements in the silkworm moth, Bombyx mori Insect Biochem. Mol. Biol. 26 1996 945 954
27. V. Ruvulo, J.E. Hill, and A. Lewitt The Tc2 transposon of Caenorhabditis elegans has the structure of a self-regulated element DNA Cell Biol. 11 1992 111 122
28. H. Shao, and Z. Tu Expanding the diversity of the IS630-Tc1-mariner superfamily: discovery of a unique DD37E transposon and reclassification of the DD37D and DD39D transposons Genetics 159 2001 1103 1115
29. B.P. Shum, D. Avila, L. Du Pasquier, M. Kasahara, and M.F. Flajnik Isolation of a classical MHC class I cDNA from an amphibian. Evidence for only one class I locus in the Xenopus MHC J. Immunol. 151 1993 5376 5386
30. E.L. Sonnhammer, and R. Durbin A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis Gene 167 1995 GC1 GC10
31. Z. Tu, and H. Shao Intra- and inter-specific diversity of Tc3-like transposons in nematodes and implications for their evolution and transposition Gene 282 2002 133 142