Identification of more than 200 glucose-responsive Arabidopsis genes none of which responds to 3-O-methylglucose or 6-deoxyglucose

Plant Molecular Biology

Volumn 55, Issue 4, 2004, Pages 467-477

  Villadsen, Dorthe ^a   Smith, Steven M ^a  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

Author keywords

Arabidopsis thaliana; Gene expression; Glucose analogue; Microarray; Seedlings; Sugar sensing

Indexed keywords

GENES; GENETIC ENGINEERING; GLUCOSE; METABOLISM; SEED;

6-DEOXYGLUCOSE (6DOG); ARABIDOPSIS GENES; GLUCOSE SIGNALING; PLANT GENES;

PLANTS (BOTANY);

GENES; GENETIC ENGINEERING; GLUCOSE; METABOLISM; PLANTS; SEEDS;

ARABIDOPSIS; ARABIDOPSIS THALIANA; CANIS FAMILIARIS;

3 METHYLGLUCOSE; 6-DEOXYGLUCOSE; DEOXYGLUCOSE; DRUG DERIVATIVE; GLUCOSE; PLANT RNA; QUINOVOSE;

ARABIDOPSIS; ARTICLE; COMPARATIVE STUDY; DNA MICROARRAY; DRUG EFFECT; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; METHODOLOGY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

3-O-METHYLGLUCOSE; ARABIDOPSIS; DEOXYGLUCOSE; GENE EXPRESSION REGULATION, PLANT; GLUCOSE; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, PLANT;

EID: 16644399307     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-004-1050-0     Document Type: Article

References (41)

1. Barker, L., Kühn, C., Weise, A.., Schulz, A., Gebhardt, C., Hirner, B., Hellmann, H., Schulze, W., Ward, J.M. and Frommer, W.B. 2000. SUT2, a putative sucrose sensor in sieve elements. Plant Cell 12: 1153-1164.
2. Barth, I., Meyer, S. and Sauer, N. 2003. PmSUC3: Characterization of a SUT2/SUC3-type sucrose transporter from Plantago major. Plant Cell 15: 1375-1385.
3. Boyes, D.C., Zayed, A.M., Ascenzi, R., McCaskill, A.J., Hoffman, N.E., Davis, K.R. and Görlach, J. 2001. Growth stage-based phenotypic analysis of Arabidopsis: A model for high throughput functional genomics in plants. Plant Cell 13: 1499-1510.
4. Cheng, W.H., Taliercio, E.W. and Chourey, P.S. 1999. Sugars modulate an unusal mode of control of the cell-wall invertase gene (Incw1) through its 3′ untranslated region in a cell suspension culture of maize. Proc. Natl. Acad. Sci. USA. 96: 10512-10517.
5. Chikano, H., Ogawa, M., Ikeda, Y., Koizumi, N., Kusano, T. and Sano, H. 2001. Two novel genes encoding SNF1-related protein kinases from Arabidopsis thaliana: differential accumulation of AtSR1 and AtSR2 transcripts in response to cytokinins and sugars, and phosphorylation of sucrose synthase by AtSR2. Mol. Gen. Genet. 264: 670-681.
6. Ciereszko, I. and Kleczkowski, L.A. 2002. Glucose and mannose regulate the expression of a major sucrose synthase gene in Arabidopsis via hexokinase-dependent mechanisms. Plant Physiol. Biochem. 40: 907-911.
7. Cortès, S., Gromova, M., Evrard, A., Roby, C., Heyraud, A., Rolin, D.B., Raymond, P. and Brouquisse, R.M. 2003. In plants, 3-O-methylglucose is phosphorylated by hexokinase but not perceived as a sugar. Plant Physiol. 131: 824-837.
8. Diez-Sampedro, A., Hirayama, B.A., Osswald, C., Gorboulev, V., Baumgarten, K., Volk, C., Wright, E.M. and Koepsell, H. 2003. A glucose sensor hiding in a family of tansporters. Proc. Natl. Acad. Sci. USA 100: 11753-11758.
9. Eckardt, N.A. 2003. The function of SUT2/SUC3 sucrose transporters: The debate continues. Plant Cell 15: 1259-1262.
10. Ehness, R., Ecker, M., Godt, D.E. and Roitsch, T. 1997. Glucose and stress independently regulate source and sink metabolism and defence mechanisms via signal transduction pathways involving protein phosphorylation. Plant Cell 9: 1825-1841.
11. Fujiki, Y., Ito, M., Nishida, I. and Watanabe, A. 2000. Multiple signaling pathways in gene expression during sugar starvation. Pharmacological analysis of din gene expression in suspension-cultured cells of Arabidopsis Plant Physiol. 124: 1139-1147.
12. Forsberg, H. and Ljungdahl, P.O. 2001. Sensors of extracellular nutrients in Saccharomyces cerevisiae. Curr. Genet. 40: 91-109.
13. Gibson, S.I. 2000. Plant sugar-response pathways. Part of a complex regulatory web. Plant Physiol. 124: 1532-1539.
14. Godt, D.E., Riegel, A. and Roitsch, T. 1995. Regulation of sucrose synthase expression in Chenopodium rubrum: Characterization of sugar induced expression in photoautotrophic suspension cultures and sink tissue specific expression in plants. J. Plant Physiol. 146: 231-238.
15. Graham, I.A., Denby, K.J. and Leaver, C.J. 1994. Carbon catabolite repression regulates glyoxylate cycle gene expression in cucumber. Plant Cell 6: 761-772.
16. Guillemain, G., Loizeau, M., Pincon-Raymond, M., Girard, J. and Leturque, A. 2000. The large intracytoplasmic loop of the glucose transporter GLUT2 is involved in glucose signaling in hepatic cells. J. Cell Sci. 113: 841-847.
17. Hilgarth, C., Sauer, N. and Tanner, W. 1991. Glucose increases the expression of the ATP/ADP translocator and the glyceraldehyde-3-phosphate dehydrogenase genes in Chlorella. J. Biol. Chem. 266: 24044-24047.
18. Ho, S.L., Chao, Y.C., Tong, W.F. and Yu, S.M. 2001. Sugar coordinately and differentially regulates growth- and stress-related gene expression via a complex signal transduction network and multiple control mechanisms. Plant Physiol. 125: 877-890.
19. Hyde. R., Taylor, P.M. and Hundal, H.S. 2003. Amino acid transporters: roles in amino acid sensing and signalling in animal cells. Biochem. J. 373: 1-18.
20. Jang, J.C. and Sheen, J. 1994. Sugar sensing in higher plants. Plant Cell 6: 1665-1679.
21. Jang, J.C., León, P., Zhou, L. and Sheen, J. 1997. Hexokinase as a sugar sensor in higher plants. Plant Cell 9: 5-19.
22. Koch, K.E. 1996. Carbohydrate modulated gene expression in plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 47: 509-540.
23. Krapp, A., Hofmann, B., Schäfer, C. and Stitt, M. 1993. Regulation of the expression of rbcS and other photosynthetic genes by carbohydrates: a mechanism for the 'sink regulation' of photosynthesis? Plant J. 3: 817-828.
24. Lalonde, S., Boles, E., Hellmann, H., Barker, L., Patrick, J.W., Frommer, W.B. and Ward, J.M. 1999. The dual function of sugar carriers. Transport and sugar sensing. Plant Cell 11: 707-726.
25. Lee, E.-J., Koizumi, N. and Sano, H. 2004. Identification of genes that are up-regulated in concert during sugar depletion in Arabidopsis. Plant, Cell Environ. 27: 337-346.
26. Lejay. L., Gansel, X., Cerezo, M., Tillard, P., Müller, C., Krapp, A., von Wirén, N., Daniel-Vedele, F. and Gojon, A. 2003. Regulation of root ion transporters by photosynthesis: Functional importance and relation with hexokinase. Plant Cell 15: 2218-2232.
27. Liao, Y.C. and Wang, A.Y. 2003. Sugar-modulated gene expression of sucrose synthase in suspension-cultured cells of rice. Physiol. Plant. 118: 319-327.
28. Martin, T., Hellmann, H., Schmidt, R., Wilmitzer, L. and Frommer, W.B. 1997. Identification of mutants in metabolically regulated gene expression. Plant J. 11: 53-62.
29. Moore, B., Zhou, L., Rolland, F., Hall, Q., Cheng, W.H., Liu, Y.X., Hwang, I., Jones, T. and Sheen, J. 2003. Role of the Arabidopsis glucose sensor HXK1 in nutrient, light, and hormonal signaling. Science 300: 332-336.
30. Oesterhelt, C. and Gross, W. 2002. Different sugar kinases are involved in the sugar sensing of Galdieria sulphuraria. Plant Physiol. 128: 291-299.
31. Özcan, S., Dover, J. and Johnston, M. 1998. Glucose sensing and signaling by two glucose receptors in the yeast Saccharomyces cerevisiae. EMBO J. 17: 2566-2573.
32. Pluthero, F.G. 1993. Rapid purification of high-activity Taq DNA polymerase. Nucl. Acids Res. 21: 4850-4851.
33. Redman, J.C., Haas, B.J., Tanimoto, G. And Town, C.D. 2004. Development and evaluation of an Arabidopsis whole genome Affymetrix probe array. Plant J. 38: 545-561.
34. Roitsch, T., Bittner, M. and Godt, D.E. 1995. Induction of apoplastic invertase of Chenopodium rubrum by D-glucose and a glucose analog and tissue-specific expression suggest a role in sink-source regulation. Plant Physiol. 108: 285-294.
35. Rook, F., Corke, F., Card, R., Munz, G., Smith, C. and Bevan, M.W. 2001. Impaired sucrose-induction mutants reveal the modulation of sugar-induced starch biosynthetic gene expression by abscisic acid signalling. Plant J. 2001 26: 421-433.
36. Schneidereit, A., Scholz-Starke, J. and Büttner, M. 2003. Functional characterization and expression analysis of glucose-specific AtSTP9 monosaccharide transporter in pollen of Arabidopsis. Plant Physiol. 133: 182-190.
37. Sherson, S.M., Hemmann, G., Wallace, G., Forbes, S., Germain, V., Stadler, R., Bechtold, N., Sauer, N. and Smith, S.M. 2000. Monosaccharide/proton symporter AtSTP1 plays a major role in uptake and response of Arabidopsis seeds and seedlings to sugars. Plant J. 24: 849-857.
38. Smeekens, S. 2000. Sugar-induced signal transduction in plants. Annu. Rev. Plant Physiol. Plant Mol. Biol. 51: 49-81.
39. Smith, S.M., Fulton, D.C., Chia, T., Thorneycroft, D., Chapple, A., Dunstan, H., Hylton, C., Zeeman, S.C. and Smith, A.M. (2004) Diurnal changes in the transcriptome encoding enzymes of starch metabolism provide evidence for both transcriptionaland post-transcriptional regulation of starch metabolism in Arabidopsis leaves. Plant Physiol., in press.
40. Thum, K.E., Shin, M.J., Palenchar, P.M., Kouranov, A. and Coruzzi, G.M. (2004) Genome-wide investigation of light and carbon signalling interactions in Arabidopsis. Genome Biol. 5: R10.
41. Wipf, D., Ludewig, U., Tegeder, M., Rentsch, D., Koch, W. and Frommer, W.B. 2002. Conservation of amino acid transporters in fungi, plants and animals. Trends Biochem. Sci. 27: 139-47.