Identification and characterization of CDC50A, CDC50B and CDC50C genes in silico

Oncology Reports

Volumn 12, Issue 4, 2004, Pages 939-943

  Katoh, Yuriko ^a   Katoh, Masaru ^b  

^a M&M Medical BioInformatics   (Japan)

^b NATIONAL CANCER CENTER RESEARCH INSTITUTE   (Japan)

Author keywords

Bioinformatics; Comparative genomics; Comparative proteomics; Human genome; Human proteome; Text mining

Indexed keywords

CARRIER PROTEIN; CDC50 PROTEIN, S CEREVISIAE; COMPLEMENTARY DNA; MEMBRANE PROTEIN; RUSC1 PROTEIN, HUMAN; SACCHAROMYCES CEREVISIAE PROTEIN; SIGNAL TRANSDUCING ADAPTOR PROTEIN;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; BIOLOGY; CHEMISTRY; CHROMOSOME 14; CHROMOSOME 3; CHROMOSOME 6; CHROMOSOME MAP; COMPARATIVE STUDY; EXON; EXPRESSED SEQUENCE TAG; GENETICS; HUMAN; INTRON; METABOLISM; METHODOLOGY; MOLECULAR GENETICS; MOUSE; NUCLEOTIDE SEQUENCE; SACCHAROMYCES CEREVISIAE; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; TISSUE DISTRIBUTION;

ADAPTOR PROTEINS, SIGNAL TRANSDUCING; AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CARRIER PROTEINS; CHROMOSOME MAPPING; CHROMOSOMES, HUMAN, PAIR 14; CHROMOSOMES, HUMAN, PAIR 3; CHROMOSOMES, HUMAN, PAIR 6; COMPUTATIONAL BIOLOGY; DNA, COMPLEMENTARY; EXONS; EXPRESSED SEQUENCE TAGS; HUMANS; INTRONS; MEMBRANE PROTEINS; MICE; MOLECULAR SEQUENCE DATA; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; TISSUE DISTRIBUTION;

EID: 16644393623     PISSN: 1021335X     EISSN: 17912431     Source Type: Journal    
DOI: None     Document Type: Article

References (63)

1. Frazier JA and Field CM: Actin cytoskeleton: are FH proteins local organizers? Curr Biol 7: R414-R417, 1997. (Pubitemid 27308957)
2. Wasserman S: FH proteins as cytoskeletal organizers. Trends Cell Biol 8: 111-115, 1998.
3. Holt MR and Koffer A: Cell motility: proline-rich proteins promote protrusions. Trends Cell Biol 11: 38-46, 2001. (Pubitemid 32056192)
4. Evangelista M, Zigmond S and Boone C: Formins: signaling effectors for assembly and polarization of actin filaments. J Cell Sci 116: 2603-2611, 2003. (Pubitemid 36857214)
5. Katoh M and Katoh M: Identification and characterization of human DAAM2 gene in silico. Int J Oncol 22: 915-920, 2003.
6. Katoh M and Katoh M: Identification and characterization of human FMNL1, FMNL2 and FMNL3 genes in silico. Int J Oncol 22: 1161-1168, 2003.
7. Katoh M and Katoh M: Identification and characterization of human GRID2IP gene and rat Grid2ip gene in silico. Int J Mol Med 12: 1015-1019, 2003.
8. Katoh M and Katoh M: Identification and characterization of human DIAPH3 gene in silico. Int J Mol Med 13: 473-478, 2004.
9. Katoh M and Katoh M: Identification and characterization of human FHOD3 gene in silico. Int J Mol Med 13: 615-620, 2004.
10. Katoh M and Katoh M: Identification and characterization of human FHDC1 gene, mouse Fhdc1 gene, and zebrafish fhdc1 gene in silico. Int J Mol Med 13: 929-934, 2004.
11. Katoh M and Katoh M: Identification and characterization of human FMN1 gene. Int J Mol Med 14: 121-126, 2004.
12. Katoh M and Katoh M: Identification and characterization of human FMN2 gene. Int J Mol Med 14: 469-474, 2004.
13. Chan DC, Bedford MT and Leder P: Formin binding proteins bear WWP/WW domains that bind proline-rich peptides and functionally resemble SH3 domains. EMBO J 15: 1045-1054, 1996. (Pubitemid 26077833)
14. Katoh M and Katoh M: FNBP2 gene on human chromosome Iq32.1 encodes ARHGAP family protein with FCH, FBH, GAP and SH3 domains. Int J Mol Med 11: 791-797, 2003.
15. Katoh M and Katoh M: Identification and characterization of human FNBP3 gene in silico. Int J Mol Med 12: 651-656, 2003.
16. Katoh M and Katoh M: Identification and characterization of human FNBP1L gene in silico. Int J Mol Med 13: 157-162, 2004.
17. Evangelista M, Blundell K, Longtine MS, et al: Bni1p, a yeast formin linking Cdc42p and the actin cytoskeleton during polarized morphogenesis. Science 276: 118-122, 1997. (Pubitemid 27161258)
18. Pringle JR, Bi E, Harkins HA, et ah Establishment of cell polarity in yeast. Cold Spring Harb Symp Quant Biol 60: 729-744, 1995.
19. Drubin DG and Nelson WJ: Origins of cell polarity. Cell 84: 335-344, 1996. (Pubitemid 26058559)
20. Pruyne D and Bretscher A: Polarization of cell growth in yeast. J Cell Sci 113:571-585, 2000.
21. Misu K, Fujimura-Kamada K, Ueda T, et al: Cdc50p, a conserved endosomal membrane protein, controls polarized growth in Saccharomyces cerevisiae. Mol Biol Cell 14: 730-747, 2003. (Pubitemid 36237028)
22. Saito K, Fujimura-Kamada K, Furuta N, et al: Cdc50p, a protein required for polarized growth, associates with the Drs2p P-type ATPase, implicated in phospholipid translocation in Saccharomyces cerevisiae. Mol Biol Cell (In press).
23. Katoh M: Paradigm shift in gene-finding method: from bench-top approach to desk-top approach. Int J Mol Med 10: 677-682, 2002.
24. Katoh M and Katoh M: Identification and characterization of human Inscuteable gene in silico. Int J Mol Med 11: 111-116, 2003.
25. Katoh M and Katoh M: Identification and characterization of human PRICKLE1 and PRICKLE2 genes as well as mouse Prickle1 and Prickle2 genes homologous to Drosophila tissue polarity gene prickle. Int J Mol Med 11: 249-256, 2003.
26. Katoh M and Katoh M: Identification and characterization of human SNAIL3 (SNAI3) gene in silico. Int J Mol Med 11: 383-388, 2003.
27. Katoh M and Katoh M: Identification and characterization of human DAPPER1 and DAPPER2 genes in silico. Int J Oncol 22: 907-913, 2003.
28. Katoh M and Katoh M: FGFR2 and WDR11 are neighboring oncogene and tumor suppressor gene on human chromosome 10q26. Int J Oncol 22: 1155-1159, 2003.
29. Katoh M and Katoh M: Recombination cluster around FGFR2-WDR11-HTPAPL locus on human chromosome 10q26. Int J Mol Med 11: 579-583, 2003.
30. Katoh M and Katoh M: CLDN23 gene, frequently down-regulated in intestinal-type gastric cancer, is a novel member of CLAUDIN gene family. Int J Mol Med 11: 683-689, 2003.
31. Katoh M and Katoh M: MGC9753 gene, located within PPP1RIB-STARD3-ERBB2- GRB7 amplicon on human chromosome 17q12, encodes seven-transmembrane receptor with extracellular six-cystein domain. Int J Oncol 22: 1369-1374, 2003.
32. Katoh M and Katoh M: FLJ10261 gene, located within the CCND1-EMS1 locus on human chromosome 11q13, encodes eight-transmembrane protein homologous to C12orf3, C11orf25 and FLJ34272 gene products. Int J Oncol 22: 1375-1381, 2003.
33. Katoh M and Katoh M: KIAA1735 gene on human chromosome 11q23.1 encodes novel protein with myosine-tail homologous domain and C-terminal DIX domain. Int J Oncol 23: 145-150, 2003.
34. Katoh M and Katoh M: MGC29506 gene, frequently downregulated in intestinal-type gastric cancer, encodes secreted-type protein with conserved cysteine residues. Int J Oncol 23: 235-241, 2003.
35. Katoh M: Trefoil factors and human gastric cancer (Review). Int J Mol Med 12: 3-9, 2003.
36. Katoh M and Katoh M: Evolutionary conservation of CCND1-ORAOV1-FGF19-FGF4 locus from zebrafish to human. Int J Mol Med 12: 45-50, 2003.
37. Katoh M and Katoh M: IGSF11 gene, frequently up-regulated in intestinal-type gastric cancer, encodes adhesion molecule homologous to CXADR, FLJ22415 and ESAM. Int J Oncol 23: 525-531, 2003.
38. Katoh M and Katoh M: Identification and characterization of human TIPARP gene within the CCNL amplicon at human chromosome 3q25.31. Int J Oncol 23: 541-547, 2003.
39. Katoh M and Katoh M: Identification and characterization of mouse Ppfia1 gene in silico. Int J Mol Med 12: 263-267, 2003.
40. Katoh M and Katoh M: Identification and characterization of human ZPBP-like gene in silico. Int J Mol Med 12: 399-404, 2003.
41. Katoh M and Katoh M: Identification and characterization of LASP2 gene in silico. Int J Mol Med 12: 405-410, 2003.
42. Katoh M and Katoh M: Identification and characterization of mouse Erbb2 gene in silico. Int J Oncol 23: 831-835, 2003.
43. Katoh M and Katoh M: Identification and characterization of ASXL2 gene in silico. Int J Oncol 23: 845-850, 2003.
44. Katoh M and Katoh M: Identification and characterization of TPARM gene in silico. Int J Oncol 23: 1213-1217, 2003.
45. Katoh M and Katoh M: Identification and characterization of FLJ10737 and CAMTA1 genes on the commonly deleted region of neuroblastoma at human chromosome 1p36.31-p36.23. Int J Oncol 23: 1219-1224, 2003.
46. Katoh M and Katoh M: Identification and characterization of human BCL9L gene and mouse Bcl9l gene in silico. Int J Mol Med 12: 643-649, 2003.
47. Katoh M and Katoh M: Identification and characterization of human KIAA1391 and mouse Kiaa1391 genes encoding novel RhoGAP family proteins with RA domain and ANXL repeats. Int J Oncol 23: 1471-1476, 2003.
48. Katoh M and Katoh M: Identification and characterization of human LL5A gene and mouse Ll5a gene in silico. Int J Oncol 23: 1477-1483, 2003.
49. Katoh M: WNT2 and human gastrointestinal cancer (Review). Int J Mol Med 12: 811-816, 2003.
50. Katoh M and Katoh M: Identification and characterization of TRIP8 gene in silico. Int J Mol Med 12: 817-821, 2003.
51. Katoh M and Katoh M: Identification and characterization of human PPFIA4 gene in silico. Int J Mol Med 12: 1009-1014, 2003.
52. Katoh M and Katoh M: Identification and characterization of human MPP7 gene and mouse Mpp7 gene in silico. Int J Mol Med 13: 333-338, 2004.
53. Katoh M and Katoh M: Identification and characterization of human LLGL4 gene and mouse Llgl4 gene in silico. Int J Oncol 24: 737-742, 2004.
54. Katoh M and Katoh M: Identification and characterization of Crumbs homolog 2 gene at human chromosome 9q33.3. Int J Oncol 24: 743-749, 2004.
55. Katoh M and Katoh M: Evolutionary recombination hotspot around GSDML-GSDM locus is closely linked to oncogenomic recombination hotspot around PPP1R1B-ERBB2-GRB7 amplicon. Int J Oncol 24: 757-763, 2004.
56. Katoh M and Katoh M: Identification and characterization of human GUKH2 gene in silico. Int J Oncol 24: 1033-1038, 2004.
57. Katoh M and Katoh M: Identification and characterization of PDZRN3 and PDZRN4 genes in silico. Int J Mol Med 13: 607-613, 2004.
58. Katoh M and Katoh M: Identification and characterization of human FOXN5 and rat Foxn5 genes in silico. Int J Oncol 24: 1339-1344, 2004.
59. Katoh M and Katoh M: Identification and characterization of TMEM16E and TMEM16F genes in silico. Int J Oncol 24: 1345-1349, 2004.
60. Katoh M and Katoh M: Identification and characterization of human FCHSD1 and FCHSD2 genes in silico. Int J Mol Med 13: 749-754, 2004.
61. Katoh M and Katoh M: Identification and characterization of ASXL3 gene in silico. Int J Oncol 24: 1617-1622, 2004.
62. Katoh M and Katoh M: Identification and characterization of JMJD2 family genes in silico. Int J Oncol 24: 1623-1628, 2004.
63. Katoh M and Katoh M: Identification and characterization of human PDZRN4L gene and mouse Pdz.rn4l gene in silico. Int J Mol Med 13:923-927, 2004.