Structural biology, ligand binding, metabomics - The changing face of high-field, high-resolution NMR spectroscopy

Journal of Molecular Structure: THEOCHEM

Volumn 666-667, Issue , 2003, Pages 499-505

  Pelczer, István ^a  

^a PRINCETON UNIVERSITY   (United States)

Author keywords

Ligand screening; Metabolic studies; Metabomics; NMR; Structural biology

Indexed keywords

LIGAND;

BINDING AFFINITY; BINDING KINETICS; CHEMICAL STRUCTURE; CONFERENCE PAPER; LIGAND BINDING; METABOLISM; MOLECULAR BIOLOGY; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; SCREENING; SENSITIVITY ANALYSIS; STRUCTURE ANALYSIS;

EID: 1642574348     PISSN: 01661280     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.theochem.2003.08.113     Document Type: Conference Paper

References (48)

1. Pervushin K., Riek R., Wider G., Wüthrich K. Proc. Natl Acad. Sci. USA. 94:1997;12366.
2. Bax A., Kontaxis G., Tjandra N. Meth. Enzymol. 339:2001;127.
3. Prestegard J.H., Kishore A.I. Curr. Opin. Chem. Biol. 5:2001;584.
4. P. Moore, personal communications, 2003.
5. Gaponenko V., Altieri A.S., Li J., Byrd E.A. J. Biomol. NMR. 24:2002;143.
6. Flaux J., Bertelsen E.B., Horwich A.L., Wüthrich K. Nature. 418:2002;207.
7. Riek R., Fiaux J., Bertelsen E.B., Horwich A.L., Wüthrich K. J. Am. Chem. Soc. 124:2002;12144.
8. Tugarinov V., Muhandiram R., Ayed A., Kay L.E. J. Am. Chem. Soc. 124:2002;10025.
9. Clore G.M., Schwieters C.D. Curr. Opin. Struct. Biol. 12:2002;146.
10. Markley J.L., Ulrich E.D., Westler W.M., Volkman B.F. Bourne P.E., Weissig G. Structural Bioinformatics. 2003;Wiley-Liss, Inc. Hoboken, NJ, USA. Chapter 5.
11. see, for example, G.T. Montelione, CABM NMR Software, CABM/Rutgers University, Piscataway, NJ, USA, www-nmr.cabm.rutgers.edu/NMRsoftware/ nmr_software.html .
12. Kim S., Szyperski T. J. Am. Chem. Soc. 125:2003;1385.
13. Yokoyama S., Matsuo Y., Hirota H., Kigawa T., Shirouzu M., Kuroda Y., Kurumizaka H., Kawaguchi S., Ito Y., Shibata T., Kainosho M., Nishimura Y., Inoue Y., Kuramitsu S. Prog. Biophys. Mol. Biol. 73:2000;363.
14. BioMagResBank, www.bmrb.wisc.edu .
15. Doreleijers F., Mading S., Maziuk D., Sojourner K., Yin L., Zhu J., Markley J.L., Ulrich L. J. Biomol. NMR. 26:2003;139.
16. Protein Data Bank, www.rcsb.org/pdb .
17. Lo M.-C., Ha S., Pelczer I., Pal S., Walker S. Proc. Natl Acad. Sci. USA. 95:1998;6455.
18. Rupert P.B., Daughdrill G.W., Bowerman B., Matthews B.W. Nat. Struct. Biol. 5:1998;484.
19. Becker E.D. High Resolution NMR. Theory and Chemical Applications. third ed. 2000;Academic Press, San Diego.
20. Pellecchia M., Sem D.S., Wüthrich K. Nat. Rev. Drug Discovery. 1:2002;211.
21. Stockman B.J., Dalvit C. Prog. NMR Spectrosc. 41:2002;187.
22. Wyss D.F., McCoy M.A., Senior M.M. Curr. Opin. Drug Discovery Dev. 5:2002;630.
23. Meyer B., Peters T. Angew. Chem. Int. Ed. Engl. 42:2003;864.
24. Jiménez-Barbero J., Peters T. NMR Spectroscopy of Glycoconjugates. 2000;Wiley, New York.
25. See, for example, the thematic issues: (a) Comb. Chem. High Throughput Scr. 5 (2002); (b) Curr. Topics Med. Chem. 3 (2003).
26. A.J. Doerr, M.A. Case, I. Pelczer, G.L. McLendon, submitted for publication.
27. Shuker S.B., Hajduk P.J., Meadows R.P., Fesik S.W. Science. 274:1996;1531.
28. Fejzo J., Lepre C.A., Peng J.W., Bernis G.W., Ajay, Murcko M.A., Moore J.M. Chem. Biol. 6:1999;755.
29. Pellecchia M., Meininger D., Dong Q., Chang E., Jack R., Sem D.S. J. Biomol. NMR. 22:2002;165.
30. Dalvit C., Fogliatto G., Stewart A., Veronesi M., Stockman B. J. Biomol. NMR. 21:2001;349.
31. See, for example, the thematic issue: Phytochemistry 62 (2003).
32. Szyperski T. Q. Rev. Biophys. 31:1998;41.
33. Szyperski T., Glaser R.W., Hochuli M., Fiaux J., Sauer U., Bailey J.E., Wüthrich K. Met. Eng. 1:1999;189.
34. Nicholson J.K., Wilson I.D. Prog. NMR Spectrosc. 21:1989;449.
35. Barbotin J.-N., Portais J.-C. NMR in Microbiology. Theory and Applications. 2000;Horizon Scientific Press.
36. Nicholson J.K., Connelly J., Lindon J.C., Holmes E. Nat. Rev. Drug Discovery. 1:2002;153.
37. Metabometrix Ltd, London, UK, www.metabometrix.com .
38. Lacey M.E., Subramanian R., Olson D.L., Webb A.G., Sweedler J.V. Chem. Rev. 99:1999;3133.
39. Capillary flow NMR probe, CapNMR™, Protasis/MRM www.protasis.com/MRM .
40. Schlotterbeck G., Ross A., Hochstrasser R., Senn R.H., Kühn T., Marek D., Schett O. Anal. Chem. 74:2002;4464.
41. Bollard M.E., Garrod S., Holmes E., Lindon J.C., Humpfer E., Spraul M., Nicholson J.K. Magn. Reson. Med. 44:2000;201.
42. Nicholson J.K., Lindon J.C., Holmes E. Xenobiotica. 29:1999;1181.
43. Lindon J.C., Holmes E., Nicholson J.K. Prog. NMR Spectrosc. 39:2001;1.
44. Henry C.M. C & EN. 80:2002;66.
45. Brindle J.T., Antti H., Holmes E., Tranter G., Nicholson J.K., Bethell H.W.L., Clarke S., Schofield P.M., McKilligin E., Mosedale D.E., Grainger D.J. Nat. Med. 8:2002;1439.
46. Chen X., Sauder S., Potier N., Van Dorsselaer A., Pelczer I., Bassler B.L., Hughson F.M. Nature. 415:2002;545.
47. Weiss R., Basu S., Hooshangi S., Kalmbach A., Karig D., Mehreja R., Netravali I. Nat. Comp. 2:2003;47.
48. I. Pelczer, A. Kalmbach, M.A. Case, R. Weiss, submitted for publication.