Identification and characterization of mouse TRMU gene encoding the mitochondrial 5-methylaminomethyl-2-thiouridylate-methyltransferase

Biochimica et Biophysica Acta - Gene Structure and Expression

Volumn 1676, Issue 2, 2004, Pages 119-126

  Yan, Qingfeng ^a   Guan, Min Xin ^a,b  

^a CINCINNATI CHILDREN'S HOSPITAL MEDICAL CENTER   (United States)

^b UNIVERSITY OF CINCINNATI COLLEGE OF MEDICINE   (United States)

Author keywords

Immunofluorescence analysis; Mitochondrial tRNA; TRMU gene

Indexed keywords

5 METHYLAMINOMETHYL 2 THIOURIDYLATE METHYLTRANSFERASE; METHYLTRANSFERASE; UNCLASSIFIED DRUG;

ANIMAL CELL; ARTICLE; BRAIN; CONTROLLED STUDY; EXON; GENE; GENE EXPRESSION; GENE IDENTIFICATION; GENE ISOLATION; GENETIC CODE; GENETIC TRAIT; HEART; IMMUNOFLUORESCENCE; LIVER; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN SYNTHESIS; SEQUENCE HOMOLOGY; TRMU GENE;

BACTERIA (MICROORGANISMS);

EID: 1642554457     PISSN: 01674781     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbaexp.2003.11.010     Document Type: Article

References (41)

1. Yokoyama S., Nishimura S. Modified nucleotides and codon recognition. Söll D., RajBhandary U.L. tRNA: Structure, Biosynthesis and Function. 1995;207-224 ASM Press, Washington, DC.
2. Limbach P.A., Crain P.F., McCloskey J.A. Summary: the modified nucleosides of RNA. Nucleic Acids Res. 22:1994;2183-2196.
3. Sprinzl M., Horn C., Brown M., Ioudovitch A., Steinberg S. Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Res. 26:1998;148-153.
4. Schon E.A., DiMauro S. Mitochondrial respiratory-chain diseases. N. Engl. J. Med. 348:2003;2656-2668.
5. Wallace D.C. Mitochondrial diseases in man and mouse. Science. 283:1999;1482-1488.
6. Leu(UUR) gene associated with the MELAS subgroup of mitochondrial encephalomyelopathies. Nature. 348:1990;651-653.
7. Lys mutation. Cell. 61:1990;931-937.
8. Yasukawa T., Suzuki T., Ishii N., Shigeo A., Ohta S., Watanabe K. Wobble modification defect in tRNA disturbs codon-anticodon interaction in a mitochondrial disease. EMBO J. 20:2001;4794-4802.
9. Leu(UUR). Nucleic Acids Res. 27:1999;756-763.
10. Leu(UUR) with pathogenic mutations of mitochondrial myopathy, encephalopathy, lactic acidosis and stroke-like episodes. J. Biol. Chem. 275:2000;4251-4257.
11. Lys with the MERRF encephalomyopathy pathogenic mutation. FEBS Lett. 467:2000;175-178.
12. Björk G.R. tRNA: structure, biosynthesis and function. Söll D., Raj Bhandary U.L. tRNA: Structure, Biosynthesis and Function. 1995;165-206 ASM Press, Washington, DC.
13. Björk G.R. Stable RNA modification. Neidhardt F.C., Curtiss R. III, Ingraham J.L., Lin E.C.C., Low B.K., Magasanik B., Reznikoff W.S., Riley M., Schaechter M., Umbarger H.E. Escherichia coli and Salmonella: Cellular and Molecular Biology. 1996;861-886 American Society for Microbiology, Washington, DC.
14. (Lys) stabilize a canonical U-turn structure. Biochemistry. 39:2000;12575-12584.
15. Glu in vivo. J. Mol. Biol. 284:1998;609-620.
16. Hagervall T.G., Björk G.R. Undermodification in the first position of the anticodon of supG-tRNA reduces translational efficiency. Mol. Gen. Genet. 196:1984;194-200.
17. Sullivan M.A., Cannon J.F., Webb F.H., Bock R.M. Antisuppressor mutation in Escherichia coli defective in biosynthesis of 5-methylaminomethyl-2- thiouridine. J. Bacteriol. 161:1985;368-376.
18. Elseviers D., Petrullo L.A., Gallagher P.J. Novel E. coli mutants deficient in biosynthesis of 5-methylaminomethyl-2-thiouridine. Nucleic Acids Res. 12:1984;3521-3534.
19. Brégeon D., Colot V., Miroslav M., Radman M., Taddei F. Translational misreading: a tRNA modification counteracts a +2 ribosomal frameshift. Genes Dev. 15:2001;2295-2306.
20. Urbonavicius J., Qian Q., Duarnad J.M., Hagervall T.G., Bjork G.R. Improvement of reading frame maintenance is a common function for several tRNA modifications. EMBO J. 20:2001;4863-4873.
21. Green S.M., Malik T., Giles I.G., Drabble W.T. The purB gene of Escherichia coli K-12 is located in an operon. Microbiology. 142(Pt. 11):1996;3219-3230.
22. Kambampati R., Lauhon C.T. MnmA and IscS are required for in vitro 2-thiouridine biosynthesis in Escherichia coli. Biochemistry. 42:2003;1109-1117.
23. Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., Liman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:1997;3389-3402.
24. Rogan P.K., Faux B.M., Schneider T.D. Information analysis of human splice site mutations. Human Mutat. 12:1998;153-171.
25. Hartl F.U., Neupert W. Protein sorting to mitochondria: evolutionary conservation of folding and assembly. Science. 247:1990;930-938.
26. Li X., Guan M.X. A human mitochondrial GTP binding protein related to tRNA modification may modulate the phenotypic expression of the deafness-associated mitochondrial 12S rRNA mutation. Mol. Cell. Biol. 22:2002;7701-7711.
27. Li X., Li R., Lin X., Guan M.X. Isolation and characterization of a putative nuclear modifier gene MTO1 involved in the pathogenesis of deafness-associated mitochondrial 12S rRNA A1555G mutation. J. Biol. Chem. 277:2002;27256-27264.
28. Agris P.F., Soll D., Seno T. Biological function of 2-thiouridine in Escherichia coli glutamic acid transfer ribonucleic acid. Biochemistry. 12:1973;4331-4337.
29. Urbonavicius J., Stahl G., Durand J.M., Ben Salem S.N., Qian Q., Farabaugh P.J., Bjork G.R. Transfer RNA modifications that alter +1 frameshifting in general fail to affect -1 frameshifting. RNA. 9:2003;760-768.
30. Glu modulates the translation rate of glutamic acid codons in vivo. J. Mol. Biol. 284:1998;621-631.
31. Li M., Tzagoloff A., Underbrink-Lyon K., Martin N.C. Identification of the paromomycin-resistance mutation in the 15S rRNA gene of yeast mitochondria. J. Biol. Chem. 257:1982;5921-5928.
32. Colby G., Wu M., Tzagoloff A. MTO1 codes for a mitochondrial protein required for respiration in paromomycin-resistant mutants of Saccharomyces cerevisiae. J. Biol. Chem. 273:1998;27945-27952.
33. Decoster E., Vassal A., Faye G. MSS1, a nuclear-encoded mitochondrial GTPase involved in the expression of COX1 subunit of cytochrome c oxidase. J. Mol. Biol. 232:1993;79-88.
34. Prezant T.R., Agapian J.V., Bohlman M.C., Bu X., Oztas S., Qiu W.Q., Arnos K.S., Cortopassi G.A., Jaber L., Rotter J.I., Shohat M., Fischel-Ghodsian N. Mitochondrial ribosomal RNA mutation associated with both antibiotic-induced and non-syndromic deafness. Nat. Genet. 4:1993;289-294.
35. Li R., Xing G., Yan M., Cao X., Liu X.Z., Bu X., Guan M.X. Cosegregation of C-insertion at position 961 with A1555G mutation of mitochondrial 12S rRNA gene in a large Chinese family with maternally inherited hearing loss. Am. J. Med. Genet. 124A:2004;113-117.
36. Zimmermann R.A., Thomas C.L., Wower J. Structure and function of rRNA in the decoding domain and at the peptidyltransferase center. Hill W.E., Moore P.B., Dahlberg A., Schlessinger D., Garrett R.A., Warner J.R. The Ribosome: Structure, Function and Evolution. 1990;331-347 American Society for Microbiology, Washington, DC.
37. Li R., Li X., Yan Q., Mo J.Q., Guan M.X. Isolation and characterization of mouse MTO1 related to mitochondrial tRNA modification. Biochim. Biophys. Acta. 1629:2003;53-59.
38. Li X., Guan M.X. Isolation and characterization of mouse GTPBP3 gene encoding a mitochondrial GTP binding protein involved in tRNA modification. Biochem. Biophys. Res. Commun. 312:2003;747-754.
39. Enriquez J.A., Chomyn A., Attardi G. MtDNA mutation in MERRF syndrome causes defective aminoacylation of tRNA and premature translation termination. Nat. Genet. 10:1995;47-55.
40. Guan M.X., Fischel-Ghodsian N., Attardi G. Biochemical evidence for nuclear gene involvement in phenotype of non-syndromic deafness associated with mitochondrial 12S rRNA mutation. Hum. Mol. Genet. 6:1996;963-971.
41. Guan M.X., Fischel-Ghodsian N., Attardi G. Nuclear background determines biochemical phenotype in the deafness-associated mitochondrial 12S rRNA mutation. Hum. Mol. Genet. 10:2001;573-580.