메뉴 건너뛰기




Volumn 37, Issue 5, 2003, Pages 707-715

Search for Alternative RNA Secondary Structures Regulating Expression of Bacterial Genes

Author keywords

Attenuator structure; Expression regulation; Proteobacteria; Search algorithm

Indexed keywords

AMINO ACID; MESSENGER RNA; RNA; TRYPTOPHAN;

EID: 1642538225     PISSN: 00268933     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1026084910427     Document Type: Article
Times cited : (2)

References (24)
  • 1
    • 0034222191 scopus 로고    scopus 로고
    • Computer-assisted analysis of regulatory signals in bacterial genomes. Attenuators of the operons involved metabolism of aromatic amino acids
    • Vitreschak A.G., Gelfand M.S. 2000. Computer-assisted analysis of regulatory signals in bacterial genomes. Attenuators of the operons involved metabolism of aromatic amino acids. Mol. Biol., 34, 545-552.
    • (2000) Mol. Biol. , vol.34 , pp. 545-552
    • Vitreschak, A.G.1    Gelfand, M.S.2
  • 3
    • 1642469755 scopus 로고    scopus 로고
    • On two algorithms to search for alternative secondary RNA structure
    • Gorbunov K.Yu, Lyubetskaya E.V., Lyubetsky V.A. 2001. On two algorithms to search for alternative secondary RNA structure. Informatsionnye Protsessy. 1, 178-187. (http://www.jip.ru/).
    • (2001) Informatsionnye Protsessy , vol.1 , pp. 178-187
    • Gorbunov, K.Yu.1    Lyubetskaya, E.V.2    Lyubetsky, V.A.3
  • 4
    • 0035873307 scopus 로고    scopus 로고
    • Discovering common stem-loop motifs in unaligned RNA sequence
    • Gorodkin J., Stricklin S.L., Stormo G.D. 2001. Discovering common stem-loop motifs in unaligned RNA sequence. Nucleic Acids Res. 29, 2035-2044.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 2035-2044
    • Gorodkin, J.1    Stricklin, S.L.2    Stormo, G.D.3
  • 5
    • 2942607685 scopus 로고    scopus 로고
    • A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
    • Eddy S.R. 2002. A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure. BMC Bioinformatics. 3, 1-16.
    • (2002) BMC Bioinformatics , vol.3 , pp. 1-16
    • Eddy, S.R.1
  • 9
    • 1642551459 scopus 로고    scopus 로고
    • A modified algorithm to search for alternative RNA secondary structures and results of calculations
    • Leont'ev L.A., Lyubetskaya E.V., Lyubetsky V.A. 2002. A modified algorithm to search for alternative RNA secondary structures and results of calculations. Informatsionnye Protsessy. 2, 100-105 (http://www.jip.ru/).
    • (2002) Informatsionnye Protsessy , vol.2 , pp. 100-105
    • Leont'ev, L.A.1    Lyubetskaya, E.V.2    Lyubetsky, V.A.3
  • 11
    • 1642551457 scopus 로고    scopus 로고
    • Identification of attenuation and antitermination regulation in prokaryotes
    • preprint 0003
    • Lathe W., Suyama M., Bork P. 2002. Identification of attenuation and antitermination regulation in prokaryotes. Genome Biology. 3, preprint 0003. (http://genome-biology.com/2002/3/6/preprint/0003).
    • (2002) Genome Biology , pp. 3
    • Lathe, W.1    Suyama, M.2    Bork, P.3
  • 13
    • 0033915990 scopus 로고    scopus 로고
    • PatSearch: A pattern matcher software that finds functional elements in nucleotide and protein sequences and assesses their statistical significance
    • Pesole G., Liuni S., D'Souza M. 2000. PatSearch: a pattern matcher software that finds functional elements in nucleotide and protein sequences and assesses their statistical significance. Bioinformatics. 16, 439-450.
    • (2000) Bioinformatics , vol.16 , pp. 439-450
    • Pesole, G.1    Liuni, S.2    D'Souza, M.3
  • 14
    • 0037100667 scopus 로고    scopus 로고
    • Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation
    • Vitreschak A.G., Rodionov D.A., Mironov A.A., Gelfand M.S. 2002. Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation. Nucleic Acids Res. 30, 3141-3151.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 3141-3151
    • Vitreschak, A.G.1    Rodionov, D.A.2    Mironov, A.A.3    Gelfand, M.S.4
  • 15
    • 2242446202 scopus 로고    scopus 로고
    • Comparative genomics of thiamin biosynthesis in procaryotes: New genes and regulatory mechanisms
    • Rodionov D.A., Vitreschak A.G., Mironov A.A., Gelfand M.S. 2002. Comparative genomics of thiamin biosynthesis in procaryotes: new genes and regulatory mechanisms. J. Biol. Chem. 277, 48949-48959.
    • (2002) J. Biol. Chem. , vol.277 , pp. 48949-48959
    • Rodionov, D.A.1    Vitreschak, A.G.2    Mironov, A.A.3    Gelfand, M.S.4
  • 16
    • 85044699455 scopus 로고    scopus 로고
    • Computer-assisted analysis of regulatory signals in complete bacterial genomes. Initiation of translation in operons of the ribosomal proteins
    • Vitreschak A.G., Bansal A.K., Titov I.I., Gelfand M.S. 1999. Computer-assisted analysis of regulatory signals in complete bacterial genomes. Initiation of translation in operons of the ribosomal proteins. Biofizika. 44, 601-610.
    • (1999) Biofizika , vol.44 , pp. 601-610
    • Vitreschak, A.G.1    Bansal, A.K.2    Titov, I.I.3    Gelfand, M.S.4
  • 17
    • 0032601488 scopus 로고    scopus 로고
    • Regulation of the Bacillus subtilis pyrimidine biosynthetic operon by transcriptional attenuation: Control of gene expression by an mRNA-binding protein
    • Switzer R.L., Turner R.J., Lu Y. 1999. Regulation of the Bacillus subtilis pyrimidine biosynthetic operon by transcriptional attenuation: control of gene expression by an mRNA-binding protein. Progress Nucleic Acid Res. Mol. Biol. 62, 329-367.
    • (1999) Progress Nucleic Acid Res. Mol. Biol. , vol.62 , pp. 329-367
    • Switzer, R.L.1    Turner, R.J.2    Lu, Y.3
  • 18
    • 0028301062 scopus 로고
    • Effects of transcriptional start site sequence and position on nucleotide-sensitive selection of alternative start sites at the pyrC promoter in Escherichia coli
    • Liu J., Turnbough C.L. Jr. 1994. Effects of transcriptional start site sequence and position on nucleotide-sensitive selection of alternative start sites at the pyrC promoter in Escherichia coli. J. Bacteriol. 176, 2938-2945.
    • (1994) J. Bacteriol. , vol.176 , pp. 2938-2945
    • Liu, J.1    Turnbough Jr., C.L.2
  • 19
    • 0031029049 scopus 로고    scopus 로고
    • Antitermination of transcription of catabolic operons
    • Rutberg B. 1997. Antitermination of transcription of catabolic operons. Mol. Microbiol. 23, 413-421.
    • (1997) Mol. Microbiol. , vol.23 , pp. 413-421
    • Rutberg, B.1
  • 21
    • 0035859828 scopus 로고    scopus 로고
    • A conserved RNA structure (thi box) is involved in regulation of thiamin biosynthetic gene expression in bacteria
    • Miranda-Rios J., Navarro M., Soberon M. 2001. A conserved RNA structure (thi box) is involved in regulation of thiamin biosynthetic gene expression in bacteria. Proc. Natl. Acad. Sci. USA. 98, 9736-9741.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 9736-9741
    • Miranda-Rios, J.1    Navarro, M.2    Soberon, M.3
  • 22
    • 0031771456 scopus 로고    scopus 로고
    • Bacillus subtilis tetA(L) gene expression: Evidence for regulation by translational reinitiation
    • Stasinopoulos S.J., Farr G.A., Bechhofer D.H. 1998. Bacillus subtilis tetA(L) gene expression: evidence for regulation by translational reinitiation. Mol. Microbiol. 30, 923-932.
    • (1998) Mol. Microbiol. , vol.30 , pp. 923-932
    • Stasinopoulos, S.J.1    Farr, G.A.2    Bechhofer, D.H.3
  • 24
    • 0031039254 scopus 로고    scopus 로고
    • Translation of the mRNA for the sporulation gene spoIIID of Bacillus subtilis is dependent upon translation of a small upstream open reading frame
    • Decatur A., McMurry M.T., Kunkel B.N., Losick R. 1997. Translation of the mRNA for the sporulation gene spoIIID of Bacillus subtilis is dependent upon translation of a small upstream open reading frame. J. Bacteriol. 179, 1324-1328.
    • (1997) J. Bacteriol. , vol.179 , pp. 1324-1328
    • Decatur, A.1    McMurry, M.T.2    Kunkel, B.N.3    Losick, R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.