Molecular Mechanisms of Stabilization of Proteolytic Enzymes: A Model of Thermolysin-Like Microbial Metalloproteases

Russian Journal of Bioorganic Chemistry

Volumn 29, Issue 5, 2003, Pages 418-425

  Demidyuk, I V ^a   Zabolotskaya, M V ^a   Safina, D R ^a   Kostrov, S V ^a  

^a INSTITUTE OF MOLECULAR GENETICS   (Russian Federation)

Author keywords

Proteolytic enzymes; Spatial structure; Thermal stability; Thermolysin like metalloproteases

Indexed keywords

METALLOPROTEINASE; PROTEINASE; THERMOLYSIN;

AMINO ACID SUBSTITUTION; ARTICLE; AUTOLYSIS; BINDING AFFINITY; CHEMICAL PROCEDURES; ENZYME STABILITY; EXPERIMENT; MICROORGANISM; NONHUMAN; PROTEIN ANALYSIS; PROTEIN DEGRADATION; THERMOSTABILITY;

EID: 1642538197     PISSN: 10681620     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1026093207604     Document Type: Article

References (76)

1. Nosoh, Y. and Sekiguchi, T., Trends Biotechnol., 1990, vol. 8, pp. 16-20.
2. Branden, C. and Tooze, J., Introduction to Protein Structure, 2nd ed., New York: Garland Publishing Inc., 1999.
3. Tucker, P.W. and Perutz, M.F., J. Mol. Biol., 1977, vol. 114, pp. 415-420.
4. Fersht, A.R. and Serrano, L., Nature, 1989, vol. 342, pp. 296-299.
5. Matthews, B.W., Nicholson, H., and Becktel, W.J., Proc. Natl. Acad. Sci. USA, 1987, vol. 84, pp. 6663-6667.
6. Matsumura, M., Signor, G., and Matthews, B.W., Nature, 1989, vol. 342, pp. 291-293.
7. Matsumura, M., Becktel, W.J., Levitt, M., and Matthews, B.W., Proc. Natl. Acad. Sci. USA, 1989, vol. 86, pp. 6562-6566.
8. Mitchinson, C. and Wells, J.A., Biochemistry, 1989, vol. 28, pp. 4807-4815.
9. Cunningham, B.C. and Wells, J.A., Protein Eng., 1987, vol. 1, pp. 319-325.
10. Pantoliano, M.W., Whitlow, M., Dodd, J.F., Hardman, S.W., Rollence, M.L., and Brian, P.M., Biochemistry, 1989, vol. 28, pp. 7205-7213.
11. Argos, P., Rossman, M.G., Grau, U.M., Zuber, H., Frank, G., and Tratschin, J.D., Biochemistry, 1979, vol. 18, pp. 5698-5703.
12. Olsen, K.W., Int. J. Pept. Protein. Res., 1983, vol. 22, pp. 469-475.
13. Haney, P.J., Badger, J.H., Buldak, G.L., Reich, C.I., Woese, C.R., and Olsen, G.J., Proc. Natl. Acad. Sci. USA, 1999, vol. 96, pp. 3578-3583.
14. Imanaka, T., Shibazaki, M., and Takagi, M., Nature, 1986, vol. 324, pp. 695-697.
15. Menendez-Arias, L. and Argos, P., J. Mol. Biol., 1989, vol. 206, pp. 397-406.
16. Mrabet, N.T., van den Broeck, A., van den Brande, I., Stanssens, P., Laroche, Y., Lambeir, A.M., Matthijssens, G., Jenkins, J., Chiadmi, M., and van Tilbeurgh, H., Biochemistry, 1992, vol. 31, pp. 2239-2253.
17. Perutz, M.F. and Raidt, H., Nature, 1975, vol. 255, pp. 256-257.
18. Ruegg, C., Ammer, D., and Lerch, K., J. Biol. Chem., 1982, vol. 257, pp. 6420-6426.
19. Zuber, H., Biophys. Chem., 1988, vol. 29, pp. 171-179.
20. Fontana, A., Biophys. Chem., 1988, vol. 29, pp. 181-193.
21. Marino, G., Nitti, G., Arnone, M.I., Sannia, G., Gambacorta, A., and De Rosa, M., J. Biol. Chem., 1988, vol. 263, pp. 12 305-12 309.
22. Doonan, S., Martini, F., Angelaccio, S., Pascarella, S., Barra, D., and Bossa, F., J. Mol. Evol., 1986, vol. 23, pp. 328-335.
23. Querol, E., Perez-Pons, J., and Mozo-Villarias, A., Protein Eng., 1996, vol. 9, pp. 265-271.
24. Fersht, A.R. and Leatherbarrow, R.J., Protein Eng., 1986, vol. 1, pp. 7-16.
25. Knowles, J.R., Science, 1987, vol. 236, pp. 1252-1258.
26. Ohmura, T., Ueda, T., Ootsuka, K., Saito, M., and Imoto, T., Protein Sci., 2001, vol. 10, pp. 313-320.
27. Mark, A.E. and van Gunsteren, W.F., Biochemistry, 1992, vol. 31, pp. 7745-7748.
28. Caflish, A. and Karplus, M., Proc. Natl. Acad. Sci. USA, 1994, vol. 91, pp. 1746-1750.
29. Schwartz, R.M. and Dayhoff, M.O., Atlas of Protein Sequence and Structure, Dayhoff, M.O., Ed., Washington, DC: Natl. Biomed. Res. Found., 1978, vol. 5, pp. 353-358.
30. Arnold, F.H. and Zhang, J.H., Trends Biotechnol., 1994, vol. 12, pp. 189-192.
31. Dahlquist, F.W., Long, J.W., and Bigbee, W.L., Biochemistry, 1976, vol. 15, pp. 1103-1111.
32. Wells, J.A. and Powers, D.B., J. Biol. Chem., 1986, Vol. 261, pp. 6564-6570.
33. van den Burg, B., Eijsink, V.G., Stulp, B.K., and Venema, G., Biochem. J., 1990, vol. 272, pp. 93-97.
34. Fassina, G., Vita, C., Dalzoppo, D., Zamai, M., Zambonin, M., and Fontana, A., Eur. J. Biochem., 1986, vol. 156, pp. 221-228.
35. Pace, C.N. and Show, K.L., Proteins, 2000, vol. 4, pp. 1-7.
36. Creighton, T.E., Biochem. J., 1990, vol. 270, pp. 1-16.
37. Pace, C.N., Methods Enzymol., 1986, vol. 131, pp. 266-280.
38. Pace, C.N., Trends Biotechnol., 1990, vol. 8, pp. 93-98.
39. Becktel, W.J. and Baase, W.A., Biopolymers, 1987, vol. 26, pp. 619-623.
40. Becktel, W.J. and Schellman, J.A., Biopolymers, 1987, vol. 26, pp. 1859-1877.
41. Vriend, G. and Eijsink, V.G., J. Comput. Aided Mol. Des., 1993, vol. 7, pp. 367-396.
42. Eijsink, V.G., van den Burg, B., Vriend, G., Berendsen, H.J., and Venema, G., Biochem. Int., 1991, vol. 24, pp. 517-525.
43. Kikodakoro, S., Miki, Y., Endo, K., Wada, A., Nagao, H., Miyake, T., Aoyama, A., Yonea, T., Kai, K., and Ooe, S., FEBS Lett., 1995, vol. 367, pp. 73-76.
44. Braxton, S. and Wells, J.A., Biochemistry, 1992, vol. 31, pp. 7796-7801.
45. Eijsink, V.G., Vriend, G., van der Vinne, B., Hazes, B., van den Burg, B., and Venema, G., Proteins, 1992, vol. 14, pp. 224-236.
46. Karpusas, M., Baase, W.A., Matsumura, M., and Matthews, B.W., Proc. Natl. Acad. Sci. USA, 1989, vol. 86, p. 8237.
47. Matsumura, M., Becktel, W.J., and Matthews, B.W., Nature, 1989, vol. 334, pp. 406-410.
48. Kimura, S., Oda, Y., Nakai, T., Katayanagi, K., Kitakuni, E., Nakai, C., Nakamura, H., Ikehara, M., and Kanaya, S., Eur. J. Biochem., 1992, vol. 206, pp. 337-343.
49. Eijsink, V.G., Dijkstra, B.W., Vriend, G., van der Zee, J.R., Veltman, O.R., van der Vinne, B., Kempe, S., and Venema, G., Protein Eng., 1992, vol. 5, pp. 421-426.
50. Eijsink, V.G., Vriend, G., van den Burg, B., van der Zee, J.R., and Venema, G., Protein Eng., 1992, vol. 5, pp. 165-170.
51. Eijsink, V.G., van der Zee, J.R., van den Burg, B., Vriend, G., and Venema, G., FEBS Lett., 1991, vol. 282, pp. 13-16.
52. Vriend, G., Berendsen, H.J., van der Zee, J.R., van den Burg, B., and Eijsink, V.G., Protein Eng., 1991, vol. 4, pp. 4941-4945.
53. Eijsink, V.G., Vriend, G., van der Zee, J.R., van den Burg, B., and Venema, G., Biochem. J., 1992, vol. 285, pp. 625-628.
54. Shortle, D., Sites, W.E., and Meeker, A.K., Biochemistry, 1990, vol. 29, pp. 8033-8041.
55. Margarit, I., Campagnoli, S., Frigerio, F., Grandi, G., De Filippis, V., and Vontana, A., Protein Eng., 1992, vol. 5, pp. 543-550.
56. Hardy, F., Vriend, G., Veltman, O.R., van der Vinne, B., Venema, G., and Eijsink, V.G., FEBS Lett., 1993, vol. 317, pp. 89-92.
57. Nakamura, S., Tanaka, T., Yada, R.Y., and Nakai, S., Protein Eng., 1997, vol. 10, pp. 1263-1269.
58. van den Burg, B., Enequist, H.G., van der Haar, M.E., Eijsink, V.G., Stulp, B.K., and Venema, G., J. Bacteriol., 1991, vol. 173, pp. 4107-4115.
59. Hardy, F., Vriend, G., van der Vinne, B., Frigerio, F., Grandy, G., Venema, G., and Eijsink, V.G., Protein Eng., 1994, vol. 7, pp. 425-430.
60. Eijsink, V.G., Vriend, G., van der Vinne, B., van der Zee, J.R., Veltman, O.R., Stulp, B.K., and Venema, G., Protein Eng., 1992, vol. 5, pp. 157-163.
61. Eijsink, V.G., Vriend, G., van den Burg, B., Venema, G., and Stulp, B.K., Protein Eng., 1990, vol. 4, pp. 99-104.
62. van den Burg, B., Dijkstra, B.W., Vriend, G., van der Vinne, B., Venema, G., and Eijsink, V.G., Eur. J. Biochem., 1994, vol. 220, pp. 981-985.
63. Veltman, O.R., Vriend, G., Berendsen, H.J., van den Burg, B., Venema, G., and Eijsink, V.G., Biochemistry, 1998, vol. 37, pp. 5312-5319.
64. Toma, S., Campagnoli, S., Margarit, I., Gianna, R., Grandi, G., Bolognesi, M., De Filipps, V., and Fontana, A., Biochemistry, 1991, vol. 30, pp. 97-106.
65. van den Burg, B., Eijsink, V.G., Stulp, B.K., and Venema, G., Biochem. J., 1990, vol. 272, pp. 93-97.
66. van den Burg, B., Dijkstra, B.W., van der Vinne, B., Stulp, B.K., Eijsink, V.G., and Venema, G., Protein Eng., 1993, vol. 6, pp. 521-527.
67. van den Burg, B., Eijsink, V.G., Vriend, G., Veltman, O.R., and Venema, G., Biotechnol. Appl. Biochem., 1998, vol. 27, pp. 125-132.
68. Veltman, O.R., Vriend, G., Hardy, F., Mansfeld, J., van den Burg, B., Venema, G., and Eijsink, V.G., Eur. J. Biochem., 1997, vol. 248, pp. 433-440.
69. Veltman, O.R., Vriend, G., Middelhoven, P.J., van den Burg, B., Venema, G., and Eijsink, V.G., Protein Eng., 1996, vol. 9, pp. 1181-1189.
70. Mansfeld, J., Vriend, G., Dijkstra, B.W., Veltman, O.R., van den Burg, B., Venema, G., Ulbrich-Hofmann, R., and Eijsink, V.G., J. Biol. Chem., 1997, vol. 272, pp. 11152-11156.
71. Vriend, G., Berendsen, H.J., van den Burg, B., Venema, G., and Eijsink, V.G., J. Biol. Chem., 1998, vol. 273, pp. 35 074-35 077.
72. van den Burg, B., Vriend, G., Veltman, O.R., Venema, G., and Eijsink, V.G., Proc. Natl. Acad. Sci. USA, 1998, vol. 95, pp. 2056-2060.
73. Eijsink, V.G., Veltman, O.R., Aukema, W., Vriend, G., and Venema, G., Nat. Struct. Biol., 1995, vol. 2, pp. 374-379.
74. Marshall, C.J., Trends Biotechnol., 1997, vol. 15, pp. 359-364.
75. Danson, M.J., Hough, D.W., Russell, R.J.M., Taylor, G.L., and Pearl, L., Protein Eng., 1996, vol. 9, pp. 629-630.
76. Durrschmidt, P., Mansfeld, J., and Ulbrich-Hofmann, R., Eur. J. Biochem., 2001, vol. 268, pp. 3612-3618.