메뉴 건너뛰기




Volumn 12, Issue 1, 2004, Pages 123-132

Structural Basis for Cooperative DNA Binding by CAP and Lac Repressor

Author keywords

[No Author keywords available]

Indexed keywords

CYCLIC AMP BINDING PROTEIN; LAC REPRESSOR PROTEIN; REPRESSOR PROTEIN; UNCLASSIFIED DRUG;

EID: 1642534356     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.str.2003.12.004     Document Type: Article
Times cited : (44)

References (43)
  • 2
    • 17944383822 scopus 로고    scopus 로고
    • Elastic rod model of a DNA loop in the lac operon
    • Balaeff A., Mahadevan L., Schulten K. Elastic rod model of a DNA loop in the lac operon. Phys. Rev. Lett. 83:1999;4900-4903.
    • (1999) Phys. Rev. Lett. , vol.83 , pp. 4900-4903
    • Balaeff, A.1    Mahadevan, L.2    Schulten, K.3
  • 4
    • 0000599528 scopus 로고
    • Repressor recognition of operator and effectors
    • J.H. Miller, & W.S. Reznikoff. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press
    • Barkley M.D., Bourgeois S. Repressor recognition of operator and effectors. Miller J.H., Reznikoff W.S. The Operon. 1980;177-220 Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
    • (1980) The Operon , pp. 177-220
    • Barkley, M.D.1    Bourgeois, S.2
  • 5
    • 0034089394 scopus 로고    scopus 로고
    • A closer view of the conformation of the Lac repressor bound to operator
    • Bell C.E., Lewis M. A closer view of the conformation of the Lac repressor bound to operator. Nat. Struct. Biol. 7:2000;209-214.
    • (2000) Nat. Struct. Biol. , vol.7 , pp. 209-214
    • Bell, C.E.1    Lewis, M.2
  • 8
    • 0032698634 scopus 로고    scopus 로고
    • Transcription activation by catabolite activator protein (CAP)
    • Busby S., Ebright R.H. Transcription activation by catabolite activator protein (CAP). J. Mol. Biol. 293:1999;199-213.
    • (1999) J. Mol. Biol. , vol.293 , pp. 199-213
    • Busby, S.1    Ebright, R.H.2
  • 9
    • 0033754160 scopus 로고    scopus 로고
    • Elastic stability of DNA configurations. II. Supercoiled plasmids with self-contact
    • Coleman B.D., Swigon D., Tobias I. Elastic stability of DNA configurations. II. Supercoiled plasmids with self-contact. Phys. Rev. E. 61:2000;759-770.
    • (2000) Phys. Rev. e , vol.61 , pp. 759-770
    • Coleman, B.D.1    Swigon, D.2    Tobias, I.3
  • 10
    • 0037306915 scopus 로고    scopus 로고
    • Fluorescence resonance energy transfer over ≅130 basepairs in hyperstable lac repressor-DNA loops
    • Edelman L.M., Cheong R., Kahn J.D. Fluorescence resonance energy transfer over ≅130 basepairs in hyperstable lac repressor-DNA loops. Biophys. J. 84:2003;1131-1145.
    • (2003) Biophys. J. , vol.84 , pp. 1131-1145
    • Edelman, L.M.1    Cheong, R.2    Kahn, J.D.3
  • 11
    • 0029004903 scopus 로고
    • Crystal structure of lac repressor core tetramer and its implications for DNA looping
    • Friedman A.M., Fischmann T.O., Steitz T.A. Crystal structure of lac repressor core tetramer and its implications for DNA looping. Science. 268:1995;1721-1727.
    • (1995) Science , vol.268 , pp. 1721-1727
    • Friedman, A.M.1    Fischmann, T.O.2    Steitz, T.A.3
  • 13
    • 0023204437 scopus 로고
    • Importance of DNA stiffness in protein-DNA binding specificity
    • Hogan M.E., Austin R.H. Importance of DNA stiffness in protein-DNA binding specificity. Nature. 329:1987;263-266.
    • (1987) Nature , vol.329 , pp. 263-266
    • Hogan, M.E.1    Austin, R.H.2
  • 14
    • 0023665179 scopus 로고
    • Influence of sequence and distance between two operators on interaction with the lac repressor
    • Hsieh W., Whitson P.A., Mathews K.S., Wells R.D. Influence of sequence and distance between two operators on interaction with the lac repressor. J. Biol. Chem. 262:1987;14583-14591.
    • (1987) J. Biol. Chem. , vol.262 , pp. 14583-14591
    • Hsieh, W.1    Whitson, P.A.2    Mathews, K.S.3    Wells, R.D.4
  • 15
    • 0025025888 scopus 로고
    • Co-operative interactions between the catabolite gene activator protein and the lac repressor at the lactose promoter
    • Hudson J.M., Fried M.G. Co-operative interactions between the catabolite gene activator protein and the lac repressor at the lactose promoter. J. Mol. Biol. 214:1990;381-396.
    • (1990) J. Mol. Biol. , vol.214 , pp. 381-396
    • Hudson, J.M.1    Fried, M.G.2
  • 17
    • 0035312645 scopus 로고    scopus 로고
    • Steered molecular dynamics and mechanical functions of proteins
    • Isralewitz B., Gao M., Schulten K. Steered molecular dynamics and mechanical functions of proteins. Curr. Opin. Struct. Biol. 11:2001;224-230.
    • (2001) Curr. Opin. Struct. Biol. , vol.11 , pp. 224-230
    • Isralewitz, B.1    Gao, M.2    Schulten, K.3
  • 18
    • 0035929295 scopus 로고    scopus 로고
    • Mean DNA bending angle and distribution of DNA bending angles in the CAP-DNA complex in solution
    • Kapanidis A.N., Ebright Y.W., Ludescher R.D., Chan S., Ebright R.H. Mean DNA bending angle and distribution of DNA bending angles in the CAP-DNA complex in solution. J. Mol. Biol. 312:2001;453-468.
    • (2001) J. Mol. Biol. , vol.312 , pp. 453-468
    • Kapanidis, A.N.1    Ebright, Y.W.2    Ludescher, R.D.3    Chan, S.4    Ebright, R.H.5
  • 19
    • 0031048190 scopus 로고    scopus 로고
    • The effect of intrinsic curvature on conformational properties of circular DNA
    • Katrich V., Vologodskii A. The effect of intrinsic curvature on conformational properties of circular DNA. Biophys. J. 72:1997;1070-1079.
    • (1997) Biophys. J. , vol.72 , pp. 1070-1079
    • Katrich, V.1    Vologodskii, A.2
  • 23
    • 0017895903 scopus 로고
    • The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides
    • Manning G.S. The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides. Q. Rev. Biophys. 2:1978;179-246.
    • (1978) Q. Rev. Biophys. , vol.2 , pp. 179-246
    • Manning, G.S.1
  • 25
    • 0033585029 scopus 로고    scopus 로고
    • Designed hyperstable lac repressor-DNA loop topologies suggest alternative loop geometries
    • Mehta R.A., Kahn J.D. Designed hyperstable lac repressor-DNA loop topologies suggest alternative loop geometries. J. Mol. Biol. 294:1999;67-77.
    • (1999) J. Mol. Biol. , vol.294 , pp. 67-77
    • Mehta, R.A.1    Kahn, J.D.2
  • 26
    • 0025343547 scopus 로고
    • The three operators of the lac operon cooperate in repression
    • Oehler S., Eismann E.R., Krämer H., Müller-Hill B. The three operators of the lac operon cooperate in repression. EMBO J. 9:1990;973-979.
    • (1990) EMBO J. , vol.9 , pp. 973-979
    • Oehler, S.1    Eismann, E.R.2    Krämer, H.3    Müller-Hill, B.4
  • 27
    • 0030005131 scopus 로고    scopus 로고
    • Simulating DNA at low resolution
    • Olson W.K. Simulating DNA at low resolution. Curr. Opin. Struct. Biol. 6:1996;242-256.
    • (1996) Curr. Opin. Struct. Biol. , vol.6 , pp. 242-256
    • Olson, W.K.1
  • 31
    • 0030593510 scopus 로고    scopus 로고
    • Structure of the CAP-DNA complex at 2.5Å resolution: A complete picture of the protein-DNA interface
    • Parkinson G., Wilson C., Gunasekera A., Ebright Y.W., Ebright R.E., Berman H.M. Structure of the CAP-DNA complex at 2.5Å resolution. a complete picture of the protein-DNA interface J. Mol. Biol. 260:1996;395-408.
    • (1996) J. Mol. Biol. , vol.260 , pp. 395-408
    • Parkinson, G.1    Wilson, C.2    Gunasekera, A.3    Ebright, Y.W.4    Ebright, R.E.5    Berman, H.M.6
  • 32
    • 0030448621 scopus 로고    scopus 로고
    • DNA looping and Lac repressor-CAP interaction
    • Perros M., Steitz T.A., Fried M.G., Hudson J.M. DNA looping and Lac repressor-CAP interaction. Science. 274:1996;1929-1931.
    • (1996) Science , vol.274 , pp. 1929-1931
    • Perros, M.1    Steitz, T.A.2    Fried, M.G.3    Hudson, J.M.4
  • 33
    • 0030977220 scopus 로고    scopus 로고
    • The effect of ionic conditions on the conformations of supercoiled DNA. I. Sedimentation analysis
    • Rybenkov V.V., Vologodskii A.V., Cozzarelli N.R. The effect of ionic conditions on the conformations of supercoiled DNA. I. Sedimentation analysis. J. Mol. Biol. 267:1997;299-311.
    • (1997) J. Mol. Biol. , vol.267 , pp. 299-311
    • Rybenkov, V.V.1    Vologodskii, A.V.2    Cozzarelli, N.R.3
  • 34
    • 0029066852 scopus 로고
    • Modeling superhelical DNA: Recent analytical and dynamic approaches
    • Schlick T. Modeling superhelical DNA. recent analytical and dynamic approaches Curr. Opin. Struct. Biol. 5:1995;245-262.
    • (1995) Curr. Opin. Struct. Biol. , vol.5 , pp. 245-262
    • Schlick, T.1
  • 35
    • 0025914242 scopus 로고
    • Crystal structure of a CAP-DNA complex: The DNA is bent by 90°
    • Schultz S.C., Schields G.C., Steitz T.A. Crystal structure of a CAP-DNA complex. the DNA is bent by 90° Science. 253:1991;1001-1007.
    • (1991) Science , vol.253 , pp. 1001-1007
    • Schultz, S.C.1    Schields, G.C.2    Steitz, T.A.3
  • 36
    • 0009062746 scopus 로고
    • Elastic rod model incorporating shear and extension, generalized nonlinear Schrödinger equations, and novel closed-form solutions for supercoiled DNA
    • Shi Y., Borovik A.E., Hearst J.E. Elastic rod model incorporating shear and extension, generalized nonlinear Schrödinger equations, and novel closed-form solutions for supercoiled DNA. J. Chem. Phys. 103:1995;3166-3183.
    • (1995) J. Chem. Phys. , vol.103 , pp. 3166-3183
    • Shi, Y.1    Borovik, A.E.2    Hearst, J.E.3
  • 41
    • 0030973367 scopus 로고    scopus 로고
    • Extension of torsionally stressed DNA by external force
    • Vologodskii A.V., Marko J.F. Extension of torsionally stressed DNA by external force. Biophys. J. 73:1997;123-132.
    • (1997) Biophys. J. , vol.73 , pp. 123-132
    • Vologodskii, A.V.1    Marko, J.F.2
  • 42
    • 0031559721 scopus 로고    scopus 로고
    • Modeling self-contact forces in the elastic theory of DNA supercoiling
    • Westcott T.P., Tobias I., Olson W.K. Modeling self-contact forces in the elastic theory of DNA supercoiling. J. Chem. Phys. 107:1997;3967-3980.
    • (1997) J. Chem. Phys. , vol.107 , pp. 3967-3980
    • Westcott, T.P.1    Tobias, I.2    Olson, W.K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.