Linkage and QTL mapping for Sus scrofa chromosome 4

Journal of Animal Breeding and Genetics, Supplement

Volumn 120, Issue SUPPL. 1, 2003, Pages 28-37

  Cepica, S ^a   Stratil, A ^a   Kopecny, M ^a   Blazkova, P ^a   Schroffel Jr J ^a   Davoli, R ^b   Fontanesi, L ^b   Reiner, G ^c,d   Bartenschlager, H ^c   Moser, G ^c,e   Geldermann, H ^c  

^a INSTITUTE OF ANIMAL PHYSIOLOGY AND GENETICS   (Czech Republic)

^b UNIVERSITY OF BOLOGNA   (Italy)

^c UNIVERSITY OF HOHENHEIM   (Germany)

^d JUSTUS LIEBIG UNIVERSITY   (Germany)

^e Genetics Solutions Pty Ltd   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

MAMMALIA; SUS; SUS SCROFA;

EID: 1642434081     PISSN: 17424488     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.0931-2668.2003.00421.x     Document Type: Article

References (42)

1. ALEXANDER, L. J.; ROHRER, G. A.; BEATTIE, C. W., 1996a: Cloning and characterization of 414 polymorphic porcine microsatellites. Anim. Genet. 27: 137-148.
2. ALEXANDER, L. J.; TROYER, D. L.; ROHRER, G. A.; SMITH, T. P. L.; SCHOOK, L. B.; BEATTIE, C. W., 1996b: Physical assignments of 68 porcine cosmids and lambda clones containing polymorphic microsatellites. Mamm. Genome. 7: 368-372.
3. ANDERSSON, L.; HALEY, C. S.; ELLEGREN, H.; KNOTT, S. A.; JOHANSSON, M.; ANDERSSON, K.; ANDERSSON-EKLUND, L.; EDFORS-LILJA, I.; FREDHOLM, M.; HANSSON, I.; HAKANSSON, J.; LUNDSTRØM, K., 1994: Genetic mapping of quantitative trait loci for growth and fatness in pigs. Science 263: 1771-1774.
4. ANDERSSON-EKLUND, L.; MARKLUND, L.; LUNDSTRØM, K.; HALEY, C. S.; ANDERSSON, K.; HANSSON, I.; MOLLER, M.; ANDERSSON, L., 1998: Mapping quantitative trait loci for carcass and meat quality traits in a Wild Boar x Large White intercross. J. Anim. Sci. 76: 694-700.
5. ARCHIBALD, A. L.; HALEY, C. S.; BROWN, J. F.; COUPERWHITE, S.; MCQUEEN, H. A.; NICHOLSON, D.; COPPIETERS, W.; VAN DE WEGHE, A.; STRATIL, A.; WINTERØ, A. K.; FREDHOLM, M.; LARSEN, N. J.; NIELSEN, V. H.; MILAN, D.; WOLOSZYN, N.; ROBIC, A.; DALENS, M.; RIQUET, J.; GELLIN, J.; CARITEZ, J.-C.; BURGAUD, G.; OLLIVIER, L.; BIDANEL, J.-P.; VAIMAN, M.; RENARD, C.; GELDERMANN, H.; DAVOLI, R.; RUYTER, D.; VERSTEGE, E. J. M.; GROENEN, M. A. M.; DAVIES, W.; HØYHEIM, B.; KEISERUD, A.; ANDERSSON, L.; ELLEGREN, H.; JOHANSSON, M.; MARKLUND, L.; MILLER, J. R.; ANDERSON DEAR, D. V.; SIGNER, E.; JEFFREYS, A. J.; MORAN, C.; LE TISSIER, P.; MULADNO; ROTHSCHILD, M. F.; TUGGLE, C. K.; VASKE, D.; HELM, J.; LIU, H.-C.; RAHMAN, A.; Yu, T. P.; LARSON, R. G.; SCHMITZ, C. B., 1995: The PiGMaP consortium linkage map of the pig (Sus scrofa). Mamm. Genome 6: 157-175.
6. BIDANEL, J.-P.; MILAN, D.; IANNUCELLI, N.; AMIGUES, Y.; BOSCHER, M. Y.; BOURGEOIS, F.; CARITEZ, J. C.; GRUAND, J.; LE ROY, P.; LAGANT, H.; QUINTANILLA, R.; RENARD, C.; GELLIN, J.; OLLIVIER, L.; CHEVALET, C., 2001: Detection of quantitative trait loci for growth and fatness in pigs. Genet. Sel. Evol. 33: 289-309.
7. BLAZKOVA, P.; KOPECNY, M.; FONTANESI, L.; STRATIL, A.; DAVOLI, R.; REINER, G.; GELDERMANN, H., 2000: Linkage assignments of the porcine ATP1A2, ATP1B1 and V-ATPase (CGI-11) genes to chromosome 4. Anim. Genet. 31: 416-418.
8. DE KONING, D. J.; JANSS, L. L.; RATTINK, A. P.; VAN OERS, P. A.; DE VRIES, B. J.; GROENEN, M. A. M.; VAN DER POEL, J. J.; DE GROOT, P. N.; BRASCAMP, E. W.; VAN ARENDONK, J. A. M., 1999: Detection of quantitative trait loci for backfat thickness and intramuscular fat content in pigs (Sus scrofa). Genetics 152: 1679-1690.
9. DE KONING, D. J.; RATTINK, A. P.; HARLIZIUS, B.; GROENEN, M. A. M.; BRASCAMP, E. W.; VAN ARENDONK, J. A. M., 2001 a: Detection and characterization of quantitative trait loci for growth and reproduction traits in pigs. Livest. Prod. Sci. 72: 185-198.
10. DE KONING, D. J.; HARLIZIUS, B.; RATTINK, A. P.; GROENEN, M. A. M.; BRASCAMP, E. W.; VAN ARENDONK, J. A. M., 2001b: Detection and characterization of quantitative trait loci for meat quality traits in pigs. J. Anim. Sci. 79: 2812-2819.
11. ELLEGREN, H.; JOHANSSON, M.; CHOWDHARY, B. P.; MARKLUND, S.; RUYTER, D.; MARKLUND, L.; BRAUNER-NIELSEN, P.; EDFORS-LILJA, I.; GUSTAVSSON, I.; JUNEJA, R. K.; ANDERSSON, L., 1993: Assignment of 20 microsatellite markers to the porcine linkage map. Genomics 16: 431-439.
12. FREDHOLM, M.; WINTERØ, A. K.; CHRISTENSEN, K.; KRISTENSEN, B.; NIELSEN, P. B.; DAVIES, W.; ARCHIBALD, A. L., 1993: Characterization of 24 porcine (dA-dC)n-(dT-dG)n microsatellites: Genotyping of unrelated animals from four breeds and linkage studies. Mamm. Genome 4: 187-192.
13. 2 families. Arch. Tierzucht 42: 67-81.
14. 2 families generated from Pietrain, Meishan and Wild Boar crosses. J. Anim. Breed. Genet 120: 363-393.
15. GRINDFLEK, E.; SZYDA, J.; LIU, Z.; LIEN, S., 2001: Detection of quantitative trait loci for meat quality in a commercial slaughter pig cross. Mamm. Genome 12: 299-304.
16. HOJNY, J., GAVALIER, M., HRADECKY, J., LINHART, J., 1967: New blood factors in pigs. In: Proc. 10th Europ. Conf. Anim. Blood Grps Biochem. Polymorph., Paris, 1966, pp. 151-158.
17. KIPSHIDZE, N. N.; KIM, H. S.; IVERSEN, P.; YAZDI, H. A.; BHARGAVA, B.; NEW, G.; MEHRAN, R.; TIO, F.; HAUDENSCHILD, C.; DANGAS, G.; STONE, G. W.; IYER, S.; ROUBIN, G. S.; LEON, M. B.; MOSES, J. W., 2002: Intramural coronary delivery of advanced antisense oligonucleotides reduces neointimal formation in the porcine stent restenosis model. J. Am. Coll. Cardiol. 39: 1686-1691.
18. KNOLL, A.; STRATIL, A.; MOSER, G.; GELDERMANN, H., 2000a: Characterization of three PCR-RFLPs in an intron of the porcine liver-and red cell-type pyruvate kinase (PKLR) gene. Anim. Genet. 31: 234.
19. KNOLL, A.; STRATIL, A.; SCHRÖFFEL, J.; MOSER, G.; DVORAK, J.; CEPICA, S., 2000b: A rare PCR-RFLP within intron 2 of the porcine TSHB gene. Czech. J. Anim. Sci. 45: 237-239.
20. KNOTT, S. A.; MARKLUND, L.; HALEY, C. S.; ANDERSSON, K.; DAVIES, W.; ELLEGREN, H.; FREDHOLM, M.; HANSSON, I.; HOYHEIM, B.; LUNDSTRÖM, K.; MOLLER, M.; ANDERSSON, L., 1998: Multiple marker mapping of quantitative trait loci in a cross between outbred Wild Boar and Large White pigs. Genetics 149: 1069-1080.
21. KNOTT, S. A.; NYSTRØM, P. E.; ANDERSSON-EKLUND, L.; STERN, S.; MARKLUND, L.; ANDERSSON, L.; HALEY, C. S., 2002: Approaches to interval mapping of QTL in a multigeneration pedigree: the example of porcine chromosome 4. Anim. Genet. 33: 26-32.
22. KOPECNY, M.; STRATIL, A.; CEPICA, S.; MOSER, G., 2000: Polymorphism in the porcine NGFB gene detected by DGGE and its linkage mapping. Czech. J. Anim. Sci. 45: 189-192.
23. LINHART, J., 1971: Lm, a new blood factor of the L system in pigs. Anim. Blood Grps Biochem. Genet. 2: 243-245.
24. MALEK, M.; DEKKERS, J. C.; LEE, H. K.; BAAS, T. J.; ROTHSCHILD, M. F., 2001 a: A molecular genome scan analysis to identify chromosomal regions influencing economic traits in the pig. I. Growth and body composition. Mamm. Genome 12: 630-636.
25. MALEK, M.; DEKKERS, J. C.; LEE, H. K.; BAAS, T. J.; PRUSA, K.; HUFF-LONERGAN, E.; ROTHSCHILD, M. F., 2001b: A molecular genome scan analysis to identify chromosomal regions influencing economic traits in the pig. II. Meat and muscle composition. Mamm. Genome 12: 637-645.
26. MARKLUND, L.; WINTERØ, A. K.; THOMSEN, P. D.; JOHANSSON, M.; FREDHOLM, M.; GUSTAFSSON, U.; ANDERSSON, L., 1993: A linkage group on pig chromosome 4 comprising the loci for blood group L, GBA, ATP1B1 and three microsatellites. Anim. Genet. 24: 333-338.
27. MARKLUND, L.; NYSTRØM, P. E.; STERN, S.; ANDERSSON-EKLUND, L.; ANDERSSON, L., 1999: Confirmed quantitative trait loci for fatness and growth on pig chromosome 4. Heredity 82: 134-141.
28. PASZEK, A. A.; WILKIE, P. J.; FLICKINGER, G. H.; ROHRER, G. A.; ALEXANDER, L. J.; BEATTIE, C. W.; SCHOOK, L. B., 1999: Interval mapping of growth in divergent swine cross. Mamm. Genome 10: 117-122.
29. PÉREZ-ENCISO, M.; CLOP, A.; NOGUERA, J. L.; OVILO, C.; COLL, A.; FOLCH, J. M.; BABOT, D.; ESTANY, J.; OLIVER, M. A.; DIAZ, I.; SANCHEZ, A., 2000: A QTL on pig chromosome 4 affects fatty acid metabolism: Evidence from an Iberian by Landrace intercross. J. Anim. Sci. 78: 2525-2531.
30. RATHJE, T. A.; ROHRER, G. A.; JOHNSON, R. K., 1997: Evidence for quantitative trait loci affecting ovulation rate in pigs. J. Anim. Sci. 75: 1486-1494.
31. RATTINK, A. P.; DE KONING, D. J.; FAIVRE, M.; HARLIZIUS, B.; VAN ARENDONK, J. A. M.; GROENEN, M. A. M., 2000: Fine mapping and imprinting analysis for fatness trait QTLs in pigs. Mamm. Genome 11: 656-661.
32. REINER, G.; WILLEMS, H.; GELDERMANN, H.; DZAPO, V., 2000: Four PCR-RFLPs and a sequence polymorphism in the porcine c-myc proto-oncogene and confirmation of the chromosomal localisation on SSC4 by linkage mapping. Anim. Genet. 31: 155-156.
33. ROHRER, G. A.; KEELE, J. W., 1998: Identification of quantitative trait loci affecting carcass composition in swine: II. Muscling and wholesale product yield traits. J. Anim. Sci. 76: 2255-2262.
34. ROHRER, G. A.; ALEXANDER, L. J.; KEELE, J. W.; SMITH, T. P.; BEATTIE, C. W., 1994: A microsatellite linkage map of the porcine genome. Genetics 136: 231-245.
35. ROHRER, G. A.; ALEXANDER, L. J.; HU, Z.; SMITH, T. P.; KEELE, J. W.; BEATTIE, C. W., 1996: A comprehensive map of the porcine genome. Genome Res. 6: 371-391.
36. ROHRER, G. A.; VÖGELI, P.; STRANZINGER, G.; ALEXANDER, L. J.; BEATTIE, C. W., 1997: Mapping 28 erythrocyte antigen, plasma protein and enzyme polymorphisms using an efficient genomic scan of the porcine genome. Anim. Genet. 28: 323-330.
37. STRATIL, A.; KNOLL, A.; MOSER, G.; KOPECNY, M.; GELDERMANN, H., 2000: The porcine adenosine monophosphate deaminase 1 (AMPD1) gene maps to chromosome 4. Anim. Genet. 31: 147-148.
38. WALLING, G. A.; ARCHIBALD, A. L.; CATTERMOLE, J. A.; DOWNING, A. C.; FINLAYSON, H. A.; NICHOLSON, D.; VISSCHER, P. M.; WALKER, C. A.; HALEY, C. S., 1998: Mapping of quantitative trait loci on porcine chromosome 4. Anim. Genet. 29: 415-424.
39. WALLING, G. A.; VISSCHER, P. M.; ANDERSSON, L.; ROTHSCHILD, M. F.; WANG, L. Z.; MOSER, G.; GROENEN, M. A. M.; BIDANEL, J.-P.; CEPICA, S.; ARCHIBALD, A. L.; GELDERMANN, H.; DE KONING, D. J.; MILAN, D.; HALEY, C. S., 2000: Combined analyses of data from quantitative trait loci mapping studies: chromosome 4 effects on porcine growth and fatness. Genetics 155: 1369-1378.
40. WANG, L.; Yu, T. P.; TUGGLE, C. K.; LIU, H. C.; ROTHSCHILD, M. F., 1998: A directed search for quantitative trait loci on chromosomes 4 and 7 in pigs. J. Anim. Sci. 76: 2560-2567.
41. WILKE, K.; JUNG, M.; CHEN, Y.; GELDERMANN, H., 1994: Porcine (GT)n sequences: structure and association with dispersed and tandem repeats. Genomics 21: 63-70.
42. WILKIE, P. J.; PASZEK, A. A.; BEATTIE, C. W.; ALEXANDER, L. J.; WHEELER, M. B.; SCHOOK, L. B., 1999: A genomic scan of porcine reproductive traits reveals possible quantitative trait loci (QTLs) for number of corpora lutea. Mamm. Genome 10: 573-578.