-
1
-
-
0032749078
-
Intrinsically unstructured proteins:re-assessing the protein structure-function paradigm
-
Wright P.E., Dyson H.J. Intrinsically unstructured proteins:re-assessing the protein structure-function paradigm. J. Mol. Biol. 293:1999;321-331.
-
(1999)
J. Mol. Biol.
, vol.293
, pp. 321-331
-
-
Wright, P.E.1
Dyson, H.J.2
-
2
-
-
0036468397
-
Coupling of folding and binding for unstructured proteins
-
Dyson H.J., Wright P.E. Coupling of folding and binding for unstructured proteins. Curr. Opin. Struct. Biol. 12:2002;54-60.
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 54-60
-
-
Dyson, H.J.1
Wright, P.E.2
-
3
-
-
0034867975
-
The protein trinity - Linking function and disorder
-
Dunker A.K., Obradovic Z. The protein trinity - linking function and disorder. Nat. Biotech. 19:2001;805-806.
-
(2001)
Nat. Biotech.
, vol.19
, pp. 805-806
-
-
Dunker, A.K.1
Obradovic, Z.2
-
4
-
-
0037627721
-
Simulating disorder-order transitions in molecular recognition of unstructured proteins: Where folding meets binding
-
Verkhivker G.M., et al. Simulating disorder-order transitions in molecular recognition of unstructured proteins: where folding meets binding. Proc. Natl. Acad. Sci. U. S. A. 100:2003;5148-5153.
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 5148-5153
-
-
Verkhivker, G.M.1
-
5
-
-
0028264860
-
Molecular dynamics simulation of protein denaturation: Solvation of the hydrophobic cores and secondary structure of barnase
-
Caflisch A., Karplus M. Molecular dynamics simulation of protein denaturation: solvation of the hydrophobic cores and secondary structure of barnase. Proc. Natl. Acad. Sci. U. S. A. 91:1994;1746-1750.
-
(1994)
Proc. Natl. Acad. Sci. U. S. A.
, vol.91
, pp. 1746-1750
-
-
Caflisch, A.1
Karplus, M.2
-
6
-
-
0029981188
-
Structure of the transition state for folding of a protein derived from experiment and simulation
-
Daggett V., et al. Structure of the transition state for folding of a protein derived from experiment and simulation. J. Mol. Biol. 257:1996;430-440.
-
(1996)
J. Mol. Biol.
, vol.257
, pp. 430-440
-
-
Daggett, V.1
-
7
-
-
0031465967
-
'New view' of protein folding reconciled with the old through multiple unfolding simulations
-
Lazaridis T., Karplus M. 'New view' of protein folding reconciled with the old through multiple unfolding simulations. Science. 278:1997;1928-1931.
-
(1997)
Science
, vol.278
, pp. 1928-1931
-
-
Lazaridis, T.1
Karplus, M.2
-
8
-
-
0038055972
-
Flexibility of monomeric and dimeric HIV-1 protease
-
Levy Y., Caflisch A. Flexibility of monomeric and dimeric HIV-1 protease. J. Phys. Chem. B. 107:2003;3068-3079.
-
(2003)
J. Phys. Chem. B
, vol.107
, pp. 3068-3079
-
-
Levy, Y.1
Caflisch, A.2
-
9
-
-
0037221599
-
Is there a unifying mechanism for protein folding?
-
Daggett V., Fersht A.R. Is there a unifying mechanism for protein folding? Trends Biochem. Sci. 28:2003;18-25.
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 18-25
-
-
Daggett, V.1
Fersht, A.R.2
-
10
-
-
0028143603
-
Characterization of the transition state of protein unfolding by use of molecular dynamics: Chymotrypsin inhibitor 2
-
Li A., Daggett V. Characterization of the transition state of protein unfolding by use of molecular dynamics: Chymotrypsin inhibitor 2. Proc. Natl. Acad. Sci. U. S. A. 91:1994;10430-10434.
-
(1994)
Proc. Natl. Acad. Sci. U. S. A.
, vol.91
, pp. 10430-10434
-
-
Li, A.1
Daggett, V.2
-
11
-
-
0001563395
-
On the transition coordinate for protein folding
-
Du R., et al. On the transition coordinate for protein folding. J. Chem. Phys. 108:1998;334-350.
-
(1998)
J. Chem. Phys.
, vol.108
, pp. 334-350
-
-
Du, R.1
-
12
-
-
0037076334
-
Molecular dynamics simulations of protein folding from the transition state
-
Gsponer J., Caflisch A. Molecular dynamics simulations of protein folding from the transition state. Proc. Natl. Acad. Sci. U. S. A. 99:2002;6719-6724.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 6719-6724
-
-
Gsponer, J.1
Caflisch, A.2
-
13
-
-
0031694146
-
Kinetic epitope mapping of the chicken lysozyme-HyHEL-10 Fab complex: Delineation of docking trajectories
-
Taylor M.G., et al. Kinetic epitope mapping of the chicken lysozyme-HyHEL-10 Fab complex: delineation of docking trajectories. Protein Sci. 7:1998;1857-1867.
-
(1998)
Protein Sci.
, vol.7
, pp. 1857-1867
-
-
Taylor, M.G.1
-
14
-
-
0034255123
-
Speeding molecular recognition by using the folding funnel: The fly-casting mechanism
-
Shoemaker B.A., et al. Speeding molecular recognition by using the folding funnel: The fly-casting mechanism. Proc. Natl. Acad. Sci. U. S. A. 97:2000;8868-8873.
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, pp. 8868-8873
-
-
Shoemaker, B.A.1
-
15
-
-
0030575937
-
Structure of the MDM2 oncoprotein bound to the p53 tumor suppressor transactivation domain
-
Kussie P., et al. Structure of the MDM2 oncoprotein bound to the p53 tumor suppressor transactivation domain. Science. 274:1996;948-953.
-
(1996)
Science
, vol.274
, pp. 948-953
-
-
Kussie, P.1
-
16
-
-
0034676455
-
Surfing the p53 network
-
Vogelstein B., et al. Surfing the p53 network. Nature. 408:2000;307-308.
-
(2000)
Nature
, vol.408
, pp. 307-308
-
-
Vogelstein, B.1
-
17
-
-
0037195098
-
Stabilities and conformations of Alzheimer's-amyloid peptide oligomers (Aβ16-22, Aβ16-35, and Aβ10-35): Sequence effects
-
Ma B., Nussinov R. Stabilities and conformations of Alzheimer's-amyloid peptide oligomers (Aβ16-22, Aβ16-35, and Aβ10-35): sequence effects. Proc. Natl. Acad. Sci. U. S. A. 99:2002;14126-14131.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 14126-14131
-
-
Ma, B.1
Nussinov, R.2
-
18
-
-
0037627715
-
The role of side-chain interactions in the early steps of aggregation: Molecular dynamics simulations of an amyloid-forming peptide from the yeast prion sup35
-
Gsponer J., et al. The role of side-chain interactions in the early steps of aggregation: molecular dynamics simulations of an amyloid-forming peptide from the yeast prion sup35. Proc. Natl. Acad. Sci. U. S. A. 100:2003;5154-5159.
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 5154-5159
-
-
Gsponer, J.1
-
19
-
-
0037337271
-
Dissecting the assembly of Aβ16-22 amyloid peptides into antiparallel sheets
-
Klimov D., Thirumalai D. Dissecting the assembly of Aβ16-22 amyloid peptides into antiparallel sheets. Structure. 11:2003;295-307.
-
(2003)
Structure
, vol.11
, pp. 295-307
-
-
Klimov, D.1
Thirumalai, D.2
-
20
-
-
0003399724
-
-
D. Frenkel, & B. Smit. San Diego: Academic Press
-
Frenkel D., Smit B. Understanding Molecular Simulations. 2002;Academic Press, San Diego.
-
(2002)
Understanding Molecular Simulations
-
-
-
21
-
-
0036725277
-
Molecular dynamics simulations of biomolecules
-
Karplus M., McCammon J.A. Molecular dynamics simulations of biomolecules. Nat. Struct. Biol. 9:2002;646-652.
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 646-652
-
-
Karplus, M.1
McCammon, J.A.2
-
22
-
-
0034718553
-
Folding simulations of a three-stranded antiparallel-sheet peptide
-
Ferrara P., Caflisch A. Folding simulations of a three-stranded antiparallel-sheet peptide. Proc. Natl. Acad. Sci. U. S. A. 97:2000;10780-10785.
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, pp. 10780-10785
-
-
Ferrara, P.1
Caflisch, A.2
-
23
-
-
0034906622
-
Analysis of a ten-nanosecond molecular dynamics simulation of mouse acetylcholinesterase
-
Tai K., et al. Analysis of a ten-nanosecond molecular dynamics simulation of mouse acetylcholinesterase. Biophys. J. 81:2001;715-724.
-
(2001)
Biophys. J.
, vol.81
, pp. 715-724
-
-
Tai, K.1
-
24
-
-
0035812426
-
Simulation of the spontaneous aggregation of phospholipids into bilayers
-
Marrink S.J., et al. Simulation of the spontaneous aggregation of phospholipids into bilayers. J. Am. Chem. Soc. 123:2001;8638-8639.
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 8638-8639
-
-
Marrink, S.J.1
|