Features of a leader peptide coding region that regulate translation initiation for the Anti-TRAP protein of B. subtilis

Molecular Cell

Volumn 13, Issue 5, 2004, Pages 703-711

  Chen, Guangnan ^a,b   Yanofsky, Charles ^a  

^a STANFORD UNIVERSITY   (United States)

^b EMORY UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANTI TRAP PROTEIN; BACTERIAL PROTEIN; TRANSFER RNA; UNCLASSIFIED DRUG;

ARTICLE; BACILLUS SUBTILIS; BACTERIAL GENE; GENE EXPRESSION; GENE FUNCTION; GENE SEQUENCE; GENETIC CODE; NONHUMAN; OPERON; PROTEIN FUNCTION; PROTEIN SYNTHESIS; REGULATOR GENE; RIBOSOME; STOP CODON; TRANSCRIPTION TERMINATION; TRANSLATION INITIATION; TRANSLATION REGULATION;

BACILLUS SUBTILIS; BACTERIAL PROTEINS; CODON, TERMINATOR; GENE EXPRESSION REGULATION, BACTERIAL; OPEN READING FRAMES; OPERON; PROTEIN BIOSYNTHESIS; PROTEIN SORTING SIGNALS; RIBOSOMES; RNA, TRANSFER; RNA-BINDING PROTEINS; TRANSCRIPTION FACTORS;

BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS);

EID: 1642308937     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1097-2765(04)00085-1     Document Type: Article

References (41)

1. Alderete J.P., Child S.J., Geballe A.P. Abundant early expression of gpUL4 from a human cytomegalovirus mutant lacking a repressive upstream open reading frame. J. Virol. 75:2001;7188-7192.
2. Anagnostopoulos C., Spizizen J. Requirements for transformation in Bacillus subtilis. J. Bacteriol. 81:1961;741-746.
3. Antson A.A., Otridge J., Brzozowski A.M., Dodson E.J., Dodson G.G., Wilson K.S., Smith T.M., Yang M., Kurecki T., Gollnick P. The structure of trp RNA-binding attenuation protein. Nature. 374:1995;693-700.
4. Antson A.A., Dodson E.J., Dodson G., Greaves R.B., Chen X., Gollnick P. Structure of the trp RNA-binding attenuation protein, TRAP, bound to RNA. Nature. 401:1999;235-242.
5. Babitzke P., Gollnick P. Posttranscription initiation control of tryptophan metabolism in Bacillus subtilis by the trp RNA-binding attenuation protein (TRAP), anti-TRAP, and RNA structure. J. Bacteriol. 183:2001;5795-5802.
6. Babitzke P., Yanofsky C. Reconstitution of Bacillus subtilis trp RNA-binding attenuation in vitro with TRAP, the trp RNA-binding attenuation protein. Proc. Natl. Acad. Sci. USA. 90:1993;133-137.
7. Babitzke P., Stults J.T., Shire S.J., Yanofsky C. TRAP, the trp RNA-binding attenuation protein of Bacillus subtilis, is a multisubunit complex that appears to recognize G/UAG repeat in the trpEDCFBA and trpG transcripts. J. Biol. Chem. 269:1994;16597-16604.
8. Babitzke P., Bear D.G., Yanofsky C. TRAP, the trp RNA-binding attenuation protein of Bacillus subtilis, is a toroid-shaped molecule that binds transcripts containing GAG or UAG repeats separated by two nucleotides. Proc. Natl. Acad. Sci. USA. 92:1995;7916-7920.
9. Burnette W.N. "Western blotting" electrophoretic transfer of proteins from sodium dodecyl sulfate-polyacrylamide gels to unmodified nitrocellulose and radiographic detection with antibody and radioiodinated protein A Anal. Biochem. 112:1981;195-203.
10. Chen G., Yanofsky C. Tandem transcription and translation regulatory sensing of uncharged tryptophan tRNA. Science. 301:2003;211-213.
11. Creighton T.E., Yanofsky C. Chorismate to tryptophan (Escherichia coli)-anthranilate synthetase, PR transferase, PRA isomerase, InGP synthetase, tryptophan synthetase. Methods Enzymol. 17:1969;365-386.
12. Das A., Yanofsky C. A ribosome binding site sequence is necessary for efficient expression of the distal gene of a translationally-coupled gene pair. Nucleic Acids Res. 12:1984;4757-4768.
13. Du H., Babitzke P. trp RNA-binding attenuation protein-mediated long distance RNA refolding regulates translation of trpE in Bacillus subtilis. J. Biol. Chem. 273:1998;20494-20503.
14. Du H., Tarpey R., Babitzke P. The trp RNA-binding attenuation protein regulates TrpG synthesis by binding to the trpG ribosome binding site of Bacillus subtilis. J. Bacteriol. 179:1997;2582-2586.
15. Dubey A.K., Baker C.S., Suzuki K., Jones A.D., Pandit P., Romeo T., Babitzke P. CsrA regulates translation of the Escherichia coli carbon starvation gene, cstA, by blocking ribosome access to the cstA transcript. J. Bacteriol. 185:2003;4450-4460.
16. Gaba A., Wang Z., Krishnamoorthy T., Hinnebusch A.G., Sachs M.S. Physical evidence for distinct mechanisms of translational control by upstream open reading frames. EMBO J. 20:2001;6453-6463.
17. Gollnick P., Babitzke P., Merino E., Yanofsky C. Aromatic amino acid metabolism in Bacillus subtilis. Sonenshein A.L., Hoch J.A., Losick R. Bacillus subtilis and Its Closest Relatives: From Genes to Cells. 2002;233-244 ASM Press, Washington, DC.
18. Henkin T.M. Transcription termination control in bacteria. Control of transcription termination in prokaryotes. Curr. Opin. Microbiol. 3:2000;149-153.
19. Henkin T.M., Yanofsky C. Regulation by transcription attenuation in bacteria. how RNA provides instructions for transcription termination/ antitermination decisions Bioessays. 24:2002;700-707.
20. Henner D., Yanofsky C. Biosynthesis of aromatic amino acids. Physiology and Molecular Genetics A.L., Sonenshein J.A., Hoch R., Losick Bacillus subtilis and Other Gram-Positive Bacteria: Biochemistry. 1993;269-280 ASM Press, Washington, DC.
21. Hinnebusch A.G. Translational regulation of yeast GCN4. A window on factors that control initiator-tRNA binding to the ribosome. J. Biol. Chem. 272:1997;21661-21664.
22. Jin H., Bjornsson A., Isaksson L.A. Cis control of gene expression in E. coli by ribosome queuing at an inefficient translational stop signal. EMBO J. 21:2002;4357-4367.
23. Lee A.I., Sarsero J.P., Yanofsky C. A temperature-sensitive trpS mutation interferes with TRAP regulation of trp gene expression in Bacillus subtilis. J. Bacteriol. 178:1996;6518-6524.
24. Lovett P.S., Rogers E.J. Ribosome regulation by the nascent peptide. Microbiol. Rev. 60:1996;366-385.
25. Merino E., Babitzke P., Yanofsky C. trp RNA-binding attenuation protein (TRAP)-trp leader RNA interation mediate transnational as well as transcriptional regulation of the Bacillus subtilis trp operon. J. Bacteriol. 177:1995;6362-6370.
26. Oppenheim D.S., Yanofsky C. Translational coupling during expression of the tryptophan operon of Escherichia coli. Genetics. 95:1980;785-795.
27. Otridge J., Gollnick P. MtrB from Bacillus subtilis binds specifically to trp leader RNA in a tryptophan dependent manner. Proc. Natl. Acad. Sci. USA. 90:1993;128-132.
28. Raney A., Law G.L., Mize G.J., Morris D.R. Regulated translation termination at the upstream open reading frame in s-adenosylmethionine decarboxylase mRNA. J. Biol. Chem. 277:2002;5988-5994.
29. Sarsero J.P., Merino E., Yanofsky C. A Bacillus subtilis gene of previously unknown function, yhaG, is translationally regulated by tryptophan-activated TRAP and appears to be involved in tryptophan transport. J. Bacteriol. 182:2000;2329-2331. a.
30. Trp charging and regulates expression of the genes of tryptophan biosynthesis. Proc. Natl. Acad. Sci. USA. 97:2000;2656-2661. b.
31. Sachs M.S., Geballe A.P. Sense and sensitivity-controlling the ribosome. Science. 297:2002;1820-1821.
32. Schagger H., von Jagow G. Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa. Anal. Biochem. 166:1987;368-379.
33. Sekiguchi J., Takada N., Okada H. Genes affecting the productivity of α-mmylase in Bacillus subtilis Marburg. J. Bacteriol. 121:1975;688-694.
34. Shimotsu H., Kuroda M.I., Yanofsky C., Henner D.J. Novel form of transcription attenuation regulates expression of the Bacillus subtilis tryptophan operon. J. Bacteriol. 166:1986;461-471.
35. Steinberg W. Temperature-induced derepression of tryptophan biosynthesis in a tryptophanyl-transfer ribonucleic acid synthetase mutant of Bacillus subtilis. J. Bacteriol. 117:1974;1023-1034.
36. Valbuzzi A., Yanofsky C. Inhibition of the B. subtilis regulatory protein TRAP by the TRAP-inhibition protein, AT. Science. 293:2001;2057-2059.
37. Valbuzzi A., Yanofsky C. Zinc is required for assembly and function of the anti-trp RNA-binding attenuation protein, AT. J. Biol. Chem. 277:2002;48574-48578.
38. Valbuzzi A., Gollnick P., Babitzke P., Yanofsky C. The anti-trp RNA-binding attenuation protein (anti-TRAP), AT, recognizes the tryptophan-activated RNA binding domain of the TRAP regulatory protein. J. Biol. Chem. 277:2002;10608-10613.
39. Vogel H.J., Bonner D.M. Acetylornithinase of Escherichia coli. partial purification and some properties J. Biol. Chem. 218:1956;97-106.
40. Yang M., de Saizieu A., van Loon A.P., Gollnick P. Translation of trpG in Bacillus subtilis is regulated by the trp RNA-binding attenuation protein (TRAP). J. Bacteriol. 177:1995;4272-4278.
41. Yu J.-S., Madison-Antenucci S., Steege D.A. Translation at higher than an optimal levels interferes with coupling at an intercistronic junction. Mol. Microbiol. 42:2001;821-834.