Iron-sulfur cluster biosynthesis: Biochemical characterization of the conformational dynamics of Thermotoga maritima IscU and the relevance for cellular cluster assembly

Journal of Biological Chemistry

Volumn 279, Issue 11, 2004, Pages 10469-10475

  Mansy, Sheref S ^a   Wu, Shu Pao ^a   Cowan, J A ^a  

^a OHIO STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIOSYNTHESIS; CONFORMATIONS; HYDRODYNAMICS; IRON; MOLECULAR STRUCTURE; SULFUR;

MOLTEN GLOBULE; PROTEIN STATES;

BIOCHEMISTRY;

IRON SULFUR PROTEIN;

ANIMAL CELL; ARTICLE; BIOGENESIS; CIRCULAR DICHROISM; CLUSTER ANALYSIS; CONFORMATIONAL TRANSITION; HYDRODYNAMICS; MOLECULAR DYNAMICS; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN ASSEMBLY; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN SECONDARY STRUCTURE; PROTEIN SYNTHESIS REGULATION; PROTEIN TERTIARY STRUCTURE; THERMOTOGA MARITIMA;

AMINO ACID SEQUENCE; ANILINO NAPHTHALENESULFONATES; CIRCULAR DICHROISM; ESCHERICHIA COLI PROTEINS; HYDROGEN-ION CONCENTRATION; IRON-SULFUR PROTEINS; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN BINDING; PROTEIN CONFORMATION; TEMPERATURE; THERMODYNAMICS; THERMOTOGA MARITIMA; TRYPSIN; ULTRAVIOLET RAYS;

ANIMALIA; THERMOTOGA; THERMOTOGA MARITIMA;

EID: 1642274382     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M312051200     Document Type: Article

References (73)

1. Zheng, L., Cash, V. L., Flint, D. H., and Dean, D. R. (1998) J. Biol. Chem. 273, 13264-13272
2. Hwang, D. M., Dempsey, A., Tan, K.-T., and Liew, C.-C. (1996) J. Mol. Evol. 43, 536-540
3. Mansy, S. S., Wu, G., Surerus, K. K., and Cowan, J. A. (2002) J. Biol. Chem. 277, 21397-21404
4. Agar, J. N., Krebs, C., Frazzon, J., Huynh, B. H., Dean, D. R., and Johnson, M. K. (2000) Biochemistry 39, 7856-7862
5. Foster, M. W., Mansy, S. S., Hwang, J., Penner-Hahn, J. E., Surerus, K. K., and Cowan, J. A. (2000) J. Am. Chem. Soc. 122, 6805-6806
6. Yuvaniyama, P., Agar, J. N., Cash, V. L., Johnson, M. K., and Dean, D. R. (2000) Proc. Natl. Acad. Sci. U. S. A. 97, 599-604
7. Wu, G., Mansy, S. S., Hemann, C., Hille, R., Surerus, K. K., and Cowan, J. A. (2002) J. Biol. Inorg. Chem. 7, 526-532
8. Krebs, C., Agar, J. N., Smith, A. D., Frazzon, J., Dean, D. R., Huynh, B. H., and Johnson, M. K. (2001) Biochemistry 40, 14069-14080
9. Jensen, L. T., and Culotta, V. C. (2000) Mol. Cell. Biol. 20, 3918-3927
10. Ollagnier-De-Choudens, S., Mattioli, T., Takahashi, Y., and Fontecave, M. (2001) J. Biol. Chem. 276, 22604-22607
11. Wu, S., Wu, G., Surerus, K. K., and Cowan, J. A. (2002) Biochemistry 41, 8876-8885
12. Wu, G., Mansy, S. S., Wu, S., Surerus, K. K., Foster, M. W., and Cowan, J. A. (2002) Biochemistry 41, 5024-5032
13. Schwartz, C. J., Giel, J. L., Patschkowski, T., Luther, C., Ruzicka, F. J., Beinert, H., and Kiley, P. J. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 14895-14900
14. Hoff, K. E., Silberg, J. J., and Vickery, L. E. (2000) Proc. Natl. Acad. Sci. U. S. A. 97, 7790-7795
15. Nuth, M., Yoon, T., and Cowan, J. A. (2002) J. Am. Chem. Soc. 124, 8774-8775
16. Yoon, T., and Cowan, J. A. (2003) J. Am. Chem. Soc. 125, 6078-6084
17. Bertini, I., Cowan, J. A., Del Bianco, C., Luchinat, C., and Mansy, S. S. (2003) J. Mol. Biol. 331, 907-924
18. Ptitsyn, O. B. (1987) J. Protein Chem. 6, 273-293
19. Ohgushi, M., and Wada, A. (1983) FEBS Lett. 164, 21-24
20. Kuwajima, K. (1977) J. Mol. Biol. 114, 241-258
21. Yao, J., Chung, J., Wright, P. E., and Dyson, H. J. (2001) Biochemistry 40, 3561-3571
22. Matthews, J. M., Norton, R. S., Hammacher, A., and Simpson, R. J. (2000) Biochemistry 39, 1942-1950
23. Cavagnero, S., Nishimura, C., Schwarzinger, S., Dyson, H. J., and Wright, P. E. (2001) Biochemistry 40, 14459-14467
24. Weber, G., and Young, L. R. (1964) J. Biol. Chem. 239, 1415-1421
25. Lakowicz, J. R. (1983) Principles of Fluorescence Spectroscopy, pp. 43-47, Plenum Publishing Corp., New York
26. Felitsky, D. J., and Record, M. T. (2003) Biochemistry 42, 2202-2217
27. Semisotnov, G. V., Rodionova, N. A., Razgulyaev, O. I., Uversky, V. N., Gripas, A. F., and Gilmanshin, R. I. (1991) Biopolymers 31, 119-128
28. Reddy, G. B., Das, K. P., Petrash, J. M., and Surewicz, W. K. (2000) J. Biol. Chem. 275, 4565-4570
29. Kusmierczyk, A. R., and Martin, J. (2000) J. Biol. Chem. 275, 33504-33511
30. Chaffotte, A., Guillou, Y., Delepierre, M., Hinz, H., and Goldberg, M. E. (1991) Biochemistry 30, 8067-8074
31. Eisenberg, D., and Crothers, D. (1979) Physical Chemistry with Applications to the Life Sciences, pp. 718-724, Benjamin/Cummings Publishing Co., Inc., Menlo Park, CA
32. Schurmann, G., Haspel, M., Grumet, M., and Erickson, H. P. (2001) Mol. Cell. Biol. 12, 1765-1773
33. Tanford, C. (1964) J. Am. Chem. Soc. 86, 2050-2059
34. Schellman, J. A. (1987) Biopolymers 26, 549-559
35. Ptitsyn, O. B., Pain, R. H., Semisotnov, G. V., Zerovnik, E., and Razgulyaev, O. I. (1990) FEBS Lett. 262, 20-24
36. Baum, J., Dobson, C. M., Evans, P. A., and Hanley, C. (1989) Biochemistry 28, 7-13
37. Fink, A. L., Calciano, L. J., Goto, Y., Kurotsu, T., and Palleros, D. R. (1994) Biochemistry 33, 12504-12511
38. Creighton, T. E., and Ewbank, J. J. (1993) Biochemistry 32, 3694-3707
39. de Laureto, P. P., De Filippis, V., Di Bello, M., Zambonin, M., and Fontana, A. (1995) Biochemistry 34, 12596-12604
40. de Laureto, P. P., Frare, E., Gottardo, R., Van Dael, H., and Fontana, A. (2002) Protein Sci. 11, 2932-2946
41. Stryer, L. (1965) J. Mol. Biol. 13, 482-495
42. Turner, D. C., and Brand, L. (1968) Biochemistry 7, 3381-3390
43. Matulis, D., and Lovrien, R. E. (1998) Biophys. J. 74, 422-429
44. Marmorino, J. L., and Pielak, G. J. (1995) Biochemistry 34, 3140-3143
45. Tanford, C., Kawahara, K., and Lapanje, S. (1967) J. Am. Chem. Soc. 89, 729-736
46. Reynolds, J. A., and Tanford, C. (1970) J. Biol. Chem. 245, 5161-5165
47. Kaiser, J. T., Clausen, T., Bourenkow, G. P., Bartunik, H.-D., Steinbacher, S., and Huber, R. (2000) J. Mol. Biol. 297, 451-464
48. Garcia de la Torre, J., Huertas, M. L., and Carrasco, B. (2000) Biophys. J. 78, 719-730
49. Myers, J. K., Pace, C. N., and Scholtz, J. M. (1995) Protein Sci. 4, 2138-2148
50. Pace, C. N., Grimsley, G. R., Thomson, J. A., and Barnett, B. J. (1988) J. Biol. Chem. 263, 11820-11825
51. Agar, J. N., Yuvaniyama, P., Jack, R. F., Cash, V. L., Smith, A. D., Dean, D. R., and Johnson, M. K. (2000) J. Biol. Inorg. Chem. 5, 167-177
52. McElroy, C., Manfredo, A., Wendt, A., Gollnick, P., and Foster, M. P. (2003) J. Mol. Biol. 323, 463-473
53. Koradi, R., Billeter, M., and Wuthrich, K. (1996) J. Mol. Graph. 14, 29-32
54. Xie, D., Bhakuni, V., and Freire, E. (1991) Biochemistry 30, 10673-10678
55. Ogasahara, K., Nakamura, M., Nakura, S., Tsunasawa, S., Kato, I., Yoshimoto, T., and Ytani, K. (1998) Biochemistry 37, 17537-17544
56. Tchorzewski, M., Krokowski, D., Boguszewska, A., Liljas, A., and Grankowski, N. (2003) Biochemistry 42, 3399-3408
57. Wange, C., Lascu, I., and Giartosio, A. (1998) Biochemistry 37, 8457-8464
58. Sirangelo, I., Bismuto, E., and Irace, G. (1994) FEBS Lett. 338, 11-15
59. Muzammil, S., Kumar, Y., and Tayyab, S. (2000) Proteins 40, 29-38
60. Genzor, C. G., Beldarrain, A., Gomez-Moreno, C., Lopez-Lacomba, J. L., Cortijo, M., and Sancho, J. (1996) Protein Sci. 5, 1376-1388
61. Fernandez-Recio, J., Romero, A., and Sancho, J. (1999) J. Mol. Biol. 290, 319-330
62. Burova, T. V., Bernhardt, R., and Pfeil, W. (1995) Protein Sci. 4, 909-916
63. Spuergin, P., Abele, U., and Schulz, G. E. (1995) Eur. J. Biochem. 231, 405-413
64. Wittung-Stafshede, P. (1998) Biochim. Biophys. Acta 1382, 324-332
65. Hurley, J. K., Caffrey, M. S., Markley, J. L., Cheng, H., Xia, B., Chae, Y., Holden, H. M., and Tollin, G. (1995) Protein Sci. 4, 58-64
66. Del Vecchio, P., Graziano, G., Granata, V., Barone, G., and Mandrich, L. (2002) Biochemistry 41, 1364-1371
67. Takase, K., Nitta, K., and Sugai, S. (1974) Biochim. Biophys. Acta 371, 352-359
68. Ahmad, F., Yadav, S., and Taneja, S. (1992) Biochem. J. 287, 481-485
69. Betton, J., and Hofnung, M. (1996) J. Biol. Chem. 271, 8046-8052
70. Schechter, A. N., and Epstein, C. J. (1968) J. Mol. Biol. 35, 567-589
71. Montono, C., Yamagishi, A., and Oshima, T. (1999) Biochemistry 38, 1332-1337
72. Wittung-Stafshede, P., Gomes, C. M., and Teixeira, M. (2000) J. Inorg. Biochem. 78, 35-41
73. Dams, T., and Jaenicke, R. (1999) Biochemistry 38, 9169-9178