-
1
-
-
0026055308
-
A classification of glycosyl hydrolases based on amino acid sequence similarities
-
Henrissat, B. (1991) A classification of glycosyl hydrolases based on amino acid sequence similarities, Biochem. J. 280, 309-316.
-
(1991)
Biochem. J.
, vol.280
, pp. 309-316
-
-
Henrissat, B.1
-
2
-
-
0032059448
-
Glycosidase families
-
Henrissat, B. (1998) Glycosidase families, Biochem. Soc. Trans. 26, 153-156.
-
(1998)
Biochem. Soc. Trans.
, vol.26
, pp. 153-156
-
-
Henrissat, B.1
-
3
-
-
77956920102
-
Plant and animal amylases
-
Academic Press, New York
-
Thoma, J. A., Spradlin, E., and Dygert, S. (1971) Plant and animal amylases, in The Enzymes, 3rd ed., Vol. 5, pp 115 -189, Academic Press, New York.
-
(1971)
The Enzymes, 3rd Ed.
, vol.5
, pp. 115-189
-
-
Thoma, J.A.1
Spradlin, E.2
Dygert, S.3
-
4
-
-
0027338121
-
The 2.0 Å resolution structure of soybean β-amylase complexed with α-cyclodextrin
-
Mikami, B., Hehre, J. A., Sato, M., Katsube, Y., Hirose, M., Morita, Y., and Sacchattini, J. S. (1993) The 2.0 Å resolution structure of soybean β-amylase complexed with α-cyclodextrin, Biochemistry 32, 6836-6845.
-
(1993)
Biochemistry
, vol.32
, pp. 6836-6845
-
-
Mikami, B.1
Hehre, J.A.2
Sato, M.3
Katsube, Y.4
Hirose, M.5
Morita, Y.6
Sacchattini, J.S.7
-
5
-
-
0028181134
-
Crystal structures of soybean β-amylase reacted with β-maltose and maltal: Active site components and their apparent roles in catalysis
-
Mikami, B., Degano, M., Hehre, E. J., and Sacchettini, J. S. (1994) Crystal structures of soybean β-amylase reacted with β-maltose and maltal: active site components and their apparent roles in catalysis, Biochemistry 33, 7779-7787.
-
(1994)
Biochemistry
, vol.33
, pp. 7779-7787
-
-
Mikami, B.1
Degano, M.2
Hehre, E.J.3
Sacchettini, J.S.4
-
6
-
-
0031015902
-
Nomenclature for sugar-binding subsites in glycosyl hydrolases
-
Davies, G. J., Wilson, K. S., and Henrissat, B. (1997) Nomenclature for sugar-binding subsites in glycosyl hydrolases, Biochem. J. 321, 557-559.
-
(1997)
Biochem. J.
, vol.321
, pp. 557-559
-
-
Davies, G.J.1
Wilson, K.S.2
Henrissat, B.3
-
7
-
-
0032584737
-
Crystal structure of recombinant soybean β-amylase complexed with β-cyclodextrin
-
Adachi, M., Mikami, B., Katsube, T., and Utsumi, S. (1998) Crystal structure of recombinant soybean β-amylase complexed with β-cyclodextrin, J. Biol. Chem. 273, 19859-19865.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 19859-19865
-
-
Adachi, M.1
Mikami, B.2
Katsube, T.3
Utsumi, S.4
-
8
-
-
0030724042
-
Anatomy of a conformational transition of β-strand 6 in soybean β-amylase caused by substrate (or inhibitor) binding to the catalytical site
-
Pujadas, G., and Palau, J. (1997) Anatomy of a conformational transition of β-strand 6 in soybean β-amylase caused by substrate (or inhibitor) binding to the catalytical site, Protein Sci. 6, 2409-2417.
-
(1997)
Protein Sci.
, vol.6
, pp. 2409-2417
-
-
Pujadas, G.1
Palau, J.2
-
9
-
-
0033152558
-
Structure of raw starch-digesting Bacillus cereus β-amylase complexed with maltose
-
Mikami, B., Adachi, M., Kage, T., Sarikaya, E., Nanmori, T., Shinke, R., and Utsumi, S. (1999) Structure of raw starch-digesting Bacillus cereus β-amylase complexed with maltose, Biochemistry 38, 7050-7061.
-
(1999)
Biochemistry
, vol.38
, pp. 7050-7061
-
-
Mikami, B.1
Adachi, M.2
Kage, T.3
Sarikaya, E.4
Nanmori, T.5
Shinke, R.6
Utsumi, S.7
-
10
-
-
3042663352
-
The roles of Glu186 and Glu380 in the catalytic reaction of soybean β-amylase
-
Kang, Y. N., Adachi, M., Utsumi, S., and Mikami, B. (2004) The roles of Glu186 and Glu380 in the catalytic reaction of soybean β-amylase, J. Mol. Biol. 339, 1129-1140.
-
(2004)
J. Mol. Biol.
, vol.339
, pp. 1129-1140
-
-
Kang, Y.N.1
Adachi, M.2
Utsumi, S.3
Mikami, B.4
-
11
-
-
33748037939
-
Amylase, alpha and beta
-
Academic Press, New York
-
Bernfeld, P. (1955) Amylase, alpha and beta, in Methods in Enzymology, Vol. 1, pp 149-150, Academic Press, New York.
-
(1955)
Methods in Enzymology
, vol.1
, pp. 149-150
-
-
Bernfeld, P.1
-
12
-
-
0017072307
-
Chemical composition and properties of soybean β-amylase
-
Morita, Y., Yagi, F., Aibara, S., and Yamashita, H. (1976) Chemical composition and properties of soybean β-amylase, J. Biochem. (Tokyo) 79, 591-603.
-
(1976)
J. Biochem. (Tokyo)
, vol.79
, pp. 591-603
-
-
Morita, Y.1
Yagi, F.2
Aibara, S.3
Yamashita, H.4
-
13
-
-
0031540792
-
Monte Carlo simulation of multiple attack mechanism of β-amylase-catalyzed reaction
-
Nakatani, H. (1997) Monte Carlo simulation of multiple attack mechanism of β-amylase-catalyzed reaction, Biopolymers 42, 831-836.
-
(1997)
Biopolymers
, vol.42
, pp. 831-836
-
-
Nakatani, H.1
-
14
-
-
0031059866
-
Processing of x-ray diffraction data collected in oscillation mode
-
Otwinowski, Z., and Minor, W. (1997) Processing of x-ray diffraction data collected in oscillation mode, Methods Enzymol. 276, 307-326.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
15
-
-
3543012707
-
Crystallography and NMR system: A new software suite for macromolecular structure determination
-
Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Crystallography and NMR system: A new software suite for macromolecular structure determination, Acta Crystallogr., Sect. D: Biol. Crystallogr. 54, 905-921.
-
(1998)
Acta Crystallogr., Sect. D: Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
Read, R.J.11
Rice, L.M.12
Simonson, T.13
Warren, G.L.14
-
17
-
-
0001339532
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis, P. J. (1997) MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures, J. Appl. Crystallogr. 24, 946-950.
-
(1997)
J. Appl. Crystallogr.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
18
-
-
0030729838
-
An extensively modified version of MolScript that includes greatly enhanced coloring capabilities
-
Esnouf, R. M. (1997) An extensively modified version of MolScript that includes greatly enhanced coloring capabilities, J. Mol. Graphics Modell. 15, 132-134.
-
(1997)
J. Mol. Graphics Modell
, vol.15
, pp. 132-134
-
-
Esnouf, R.M.1
-
19
-
-
0030815133
-
Raster3D: Photorealistic molecular graphics
-
Merritt, E. A., and Cacon, D. J. (1997) "Raster3D: Photorealistic Molecular Graphics", Methods Enzymol. 277, 505-524.
-
(1997)
Methods Enzymol.
, vol.277
, pp. 505-524
-
-
Merritt, E.A.1
Cacon, D.J.2
-
20
-
-
1842692143
-
General definition of ring puckering coordinates
-
Cremer, D., and Pople, J. A. (1975) General definition of ring puckering coordinates, J. Am. Chem. Soc. 97, 1354-1358.
-
(1975)
J. Am. Chem. Soc.
, vol.97
, pp. 1354-1358
-
-
Cremer, D.1
Pople, J.A.2
-
21
-
-
0001792356
-
Single-crystal structure validation with the program PLATON
-
Spek, A. L. (2003) Single-crystal structure validation with the program PLATON, J. Appl. Crystallogr. 36, 7-13.
-
(2003)
J. Appl. Crystallogr.
, vol.36
, pp. 7-13
-
-
Spek, A.L.1
-
22
-
-
73649194755
-
Stereochemistry of polypeptide chain configurations
-
Ramachandran, G. N., Ramakrishnan, C., and Sasisekharan, V. (1963) Stereochemistry of polypeptide chain configurations, J. Mol. Biol. 7, 95-99.
-
(1963)
J. Mol. Biol.
, vol.7
, pp. 95-99
-
-
Ramachandran, G.N.1
Ramakrishnan, C.2
Sasisekharan, V.3
-
23
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R. A., MacArthur, M. W., Moss, D. S., and Thornton, J. M. (1993) PROCHECK: a program to check the stereochemical quality of protein structures, J. Appl. Crystallogr. 26, 283-291.
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
24
-
-
1342325382
-
Structural and enzymatic analysis of soybean β-amylase mutants with increased pH optimum
-
Hirata, A., Adachi, M., Sekine, A., Kang, Y. N., Utsumi, S., and Mikami, B. (2003) Structural and enzymatic analysis of soybean β-amylase mutants with increased pH optimum, J. Biol. Chem. 279, 7287-7295.
-
(2003)
J. Biol. Chem.
, vol.279
, pp. 7287-7295
-
-
Hirata, A.1
Adachi, M.2
Sekine, A.3
Kang, Y.N.4
Utsumi, S.5
Mikami, B.6
-
25
-
-
0024455131
-
Contributions of left-handed helical residues to the structure and stability of bacteriophage T4 lysozyme
-
Nicholson, H., Soderlind, E., Tronrud, D. E., and Matthews, B. W. (1989) Contributions of left-handed helical residues to the structure and stability of bacteriophage T4 lysozyme, J. Mol. Biol. 210, 181-193.
-
(1989)
J. Mol. Biol.
, vol.210
, pp. 181-193
-
-
Nicholson, H.1
Soderlind, E.2
Tronrud, D.E.3
Matthews, B.W.4
-
26
-
-
16344382092
-
-
Indian Academy of Science, Bangalore, India
-
Eswar, N., and Ramakrishnan, C. (1991) Perspectives in structural biology, pp 181-195, Indian Academy of Science, Bangalore, India.
-
(1991)
Perspectives in Structural Biology
, pp. 181-195
-
-
Eswar, N.1
Ramakrishnan, C.2
-
27
-
-
0025881751
-
Influence of the local amino acid sequence upon the zones of the torsional angles phi and psi adopted by residues in proteins
-
Gibrat, J. P., Robson, B., and Gamier, J. (1991) Influence of the local amino acid sequence upon the zones of the torsional angles phi and psi adopted by residues in proteins, Biochemistry 30, 1578-1586.
-
(1991)
Biochemistry
, vol.30
, pp. 1578-1586
-
-
Gibrat, J.P.1
Robson, B.2
Gamier, J.3
-
28
-
-
0028014680
-
Evidence for strained interactions between side-chains and the polypeptide backbone
-
Stiles, W. E., Meeker, A. K., and Shortle, D. (1994) Evidence for strained interactions between side-chains and the polypeptide backbone, J. Mol. Biol. 235, 27-32.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 27-32
-
-
Stiles, W.E.1
Meeker, A.K.2
Shortle, D.3
-
29
-
-
0026055156
-
Analysis of the steric strain in the polypeptide backbone of protein molecules
-
Herzberg, O., and Moult, J. (1991) Analysis of the steric strain in the polypeptide backbone of protein molecules, Proteins 11, 223-229.
-
(1991)
Proteins
, vol.11
, pp. 223-229
-
-
Herzberg, O.1
Moult, J.2
-
30
-
-
0027458493
-
Active-centre torsion-angle strain revealed in 1.6 Å-resolution structure of histidine-containing phosphocarrier protein
-
Jia, Z., Vandonselaar, M., Quail, J. W., and Delbaere, L. T. (1993) Active-centre torsion-angle strain revealed in 1.6 Å-resolution structure of histidine-containing phosphocarrier protein, Nature 361, 94-97.
-
(1993)
Nature
, vol.361
, pp. 94-97
-
-
Jia, Z.1
Vandonselaar, M.2
Quail, J.W.3
Delbaere, L.T.4
-
31
-
-
0006322177
-
The significance of multiple reactions in enzyme-polymer systems
-
Bailey, J. M., and French, D. (1957) The significance of multiple reactions in enzyme-polymer systems, J. Biol. Chem. 226, 1-14.
-
(1957)
J. Biol. Chem.
, vol.226
, pp. 1-14
-
-
Bailey, J.M.1
French, D.2
-
32
-
-
4644359182
-
Action pattern of β-amylase
-
French, D. (1961) Action pattern of β-amylase, Nature 190, 445-446.
-
(1961)
Nature
, vol.190
, pp. 445-446
-
-
French, D.1
-
33
-
-
0031757669
-
Multiple sequence alignment with ClustalX
-
Jeannmougin, F., Thompson, J. D., Gouy, M., Higgins, D. G., and Gibson, T. J. (1998) Multiple sequence alignment with ClustalX, Trends Biochem. Sci. 23, 403-405.
-
(1998)
Trends Biochem. Sci.
, vol.23
, pp. 403-405
-
-
Jeannmougin, F.1
Thompson, J.D.2
Gouy, M.3
Higgins, D.G.4
Gibson, T.J.5
|