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Volumn 54, Issue 1, 2005, Pages 56-65

Biogeographic interpretation of splits graphs: Least squares optimization of branch lengths

Author keywords

Biogeography; Hybridization; Least squares; Recent species radiation; Reticulation; Split decomposition

Indexed keywords

ARTICLE; BIOLOGICAL MODEL; BORAGINACEAE; CLASSIFICATION; COMPARATIVE STUDY; GENETICS; GEOGRAPHY; METHODOLOGY; MOLECULAR EVOLUTION; NEW ZEALAND; PHYLOGENY; RANUNCULACEAE; REGRESSION ANALYSIS; SPECIES DIFFERENCE;

EID: 15944373186     PISSN: 10635157     EISSN: None     Source Type: Journal    
DOI: 10.1080/10635150590906046     Document Type: Article
Times cited : (26)

References (48)
  • 1
    • 0030207565 scopus 로고    scopus 로고
    • Instability of quartet analyses of molecular sequence data by the maximum likelihood method: The cetacea/artiodactyla relationships
    • Adachi, J., and M. Hasegawa. 1996. Instability of quartet analyses of molecular sequence data by the maximum likelihood method: The cetacea/artiodactyla relationships. Mol. Phylogenet. Evol. 16:72-76.
    • (1996) Mol. Phylogenet. Evol. , vol.16 , pp. 72-76
    • Adachi, J.1    Hasegawa, M.2
  • 2
    • 0033178843 scopus 로고    scopus 로고
    • Nuclear ribosomal DNA (nrDNA) concerted evolution in natural and artifical hybrids of Armeria (Plumbaginaceae)
    • Aguilar, J. F., J. A. Rossello, and G. Nieto Feliner. 1999. Nuclear ribosomal DNA (nrDNA) concerted evolution in natural and artifical hybrids of Armeria (Plumbaginaceae). Mol. Ecol. 8:1341-1346.
    • (1999) Mol. Ecol. , vol.8 , pp. 1341-1346
    • Aguilar, J.F.1    Rossello, J.A.2    Nieto Feliner, G.3
  • 3
    • 0026822377 scopus 로고
    • Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: An example from the Compositae
    • Baldwin, B. G. 1992. Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: An example from the Compositae. Mol. Phylogenet. Evol. 1:3-16.
    • (1992) Mol. Phylogenet. Evol. , vol.1 , pp. 3-16
    • Baldwin, B.G.1
  • 4
    • 0001893191 scopus 로고
    • Historical biogeography and ecology of the Hawaiian silversword alliance
    • (W. L. Wagner and V. A. Funk, eds.). Smithsonian Institution Press, Washington, D.C.
    • Baldwin, B. G., and R. H. Robichaux. 1995. Historical biogeography and ecology of the Hawaiian silversword alliance. Pages 259-287 in Hawaiian biogeography: Evolution on a hot spot archipelago (W. L. Wagner and V. A. Funk, eds.). Smithsonian Institution Press, Washington, D.C.
    • (1995) Hawaiian Biogeography: Evolution on a Hot Spot Archipelago , pp. 259-287
    • Baldwin, B.G.1    Robichaux, R.H.2
  • 5
    • 0032482931 scopus 로고    scopus 로고
    • Age and diversification of the Hawaiian silversword alliance (Compositae)
    • Baldwin, B. G., and M. J. Sanderson. 1998. Age and diversification of the Hawaiian silversword alliance (Compositae). Proc. Natl. Acad. Sci. USA 95:9402-9406.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 9402-9406
    • Baldwin, B.G.1    Sanderson, M.J.2
  • 6
    • 0026911267 scopus 로고
    • Split decomposition: A new and useful approach to phylogenetic analysis of distance data
    • Bandelt, H.-J., and A. Dress. 1992. Split decomposition: A new and useful approach to phylogenetic analysis of distance data. Mol. Phylogenet. Evol. 1:242-252.
    • (1992) Mol. Phylogenet. Evol. , vol.1 , pp. 242-252
    • Bandelt, H.-J.1    Dress, A.2
  • 7
    • 0032900678 scopus 로고    scopus 로고
    • Median-joining networks for inferring intraspecific phylogenies
    • Bandelt, H.-J., P. Forster, and A. Röhl. 1999. Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 16:37-48.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 37-48
    • Bandelt, H.-J.1    Forster, P.2    Röhl, A.3
  • 8
    • 0029149631 scopus 로고
    • Mitochondrial portraits of human populations using median networks
    • Bandelt, H.-J., P. Forster, B. C. Sykes, and M. B. Richards. 1995. Mitochondrial portraits of human populations using median networks. Genetics 141:743-753.
    • (1995) Genetics , vol.141 , pp. 743-753
    • Bandelt, H.-J.1    Forster, P.2    Sykes, B.C.3    Richards, M.B.4
  • 9
    • 0033928911 scopus 로고    scopus 로고
    • Median networks: Speedy construction and greedy reduction, one simulation, and two case studies from human mtDNA
    • Bandelt, H.-J., V. Macaulay, and M. Richards. 2000. Median networks: Speedy construction and greedy reduction, one simulation, and two case studies from human mtDNA. Mol. Phylogenet. Evol. 16:8-28.
    • (2000) Mol. Phylogenet. Evol. , vol.16 , pp. 8-28
    • Bandelt, H.-J.1    Macaulay, V.2    Richards, M.3
  • 10
    • 0029862499 scopus 로고    scopus 로고
    • Island colonisation and evolution of the insular woody habit in Echium L. (Boraginaceae)
    • Bohle, U.-R., H. H. Hilger, and W. F. Martin. 1996. Island colonisation and evolution of the insular woody habit in Echium L. (Boraginaceae). Proc. Natl. Acad. Sci. USA 92:11740-11745.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 11740-11745
    • Bohle, U.-R.1    Hilger, H.H.2    Martin, W.F.3
  • 11
    • 0031035491 scopus 로고    scopus 로고
    • The evolution of ribosomal DNA: Divergent paralogues and phylogenetic implications
    • Buckler, E. S., A. Ippolito, and T. P. Holtsford. 1997. The evolution of ribosomal DNA: Divergent paralogues and phylogenetic implications. Genetics 145:821-832.
    • (1997) Genetics , vol.145 , pp. 821-832
    • Buckler, E.S.1    Ippolito, A.2    Holtsford, T.P.3
  • 12
    • 0000156374 scopus 로고
    • Phylogenetic analysis: Models and estimation procedures
    • Cavalli-Sforza, L. L., and A. Edwards. 1967. Phylogenetic analysis: Models and estimation procedures. Evolution 21:550-570.
    • (1967) Evolution , vol.21 , pp. 550-570
    • Cavalli-Sforza, L.L.1    Edwards, A.2
  • 13
    • 0031741723 scopus 로고    scopus 로고
    • The effect of Quaternary climatic changes on plant distribution and evolution
    • Comes, H. P., and J. W. Kadereit. 1998. The effect of Quaternary climatic changes on plant distribution and evolution. Trends Pl. Sci. 3:431-438.
    • (1998) Trends Pl. Sci. , vol.3 , pp. 431-438
    • Comes, H.P.1    Kadereit, J.W.2
  • 14
    • 0000472542 scopus 로고
    • Estimating phylogenetic trees from distance matrices
    • Farris, J. S. 1972. Estimating phylogenetic trees from distance matrices. Am. Nat. 106:645-668.
    • (1972) Am. Nat. , vol.106 , pp. 645-668
    • Farris, J.S.1
  • 15
    • 0021581577 scopus 로고
    • Distance methods for inferring phylogenies: A justification
    • Felsenstein, J. 1984. Distance methods for inferring phylogenies: A justification. Evolution. 38:16-24.
    • (1984) Evolution , vol.38 , pp. 16-24
    • Felsenstein, J.1
  • 17
    • 0003122803 scopus 로고
    • Botany Division, Department of Scientific and Industrial Research, Wellington
    • Fisher, F. J. F. 1965. The alpine Ranunculi of New Zealand. Botany Division, Department of Scientific and Industrial Research, Wellington.
    • (1965) The Alpine Ranunculi of New Zealand
    • Fisher, F.J.F.1
  • 18
    • 0014211361 scopus 로고
    • Construction of phylogenetic trees
    • Fitch, W. M., and E. Margoliash. 1967. Construction of phylogenetic trees. Science 155:279-284.
    • (1967) Science , vol.155 , pp. 279-284
    • Fitch, W.M.1    Margoliash, E.2
  • 20
    • 3042596200 scopus 로고    scopus 로고
    • Consensus networks: A method for visualising incompatibilities in collections of trees
    • September 15-20, 2003 in Budapest, Hungary
    • Holland, B., and V. Moulton. 2003. Consensus networks: A method for visualising incompatibilities in collections of trees. Proceedings of the Workshop on Algorithms in Bioinformatics (WABI), September 15-20, 2003 in Budapest, Hungary.
    • (2003) Proceedings of the Workshop on Algorithms in Bioinformatics (WABI)
    • Holland, B.1    Moulton, V.2
  • 21
    • 0034777578 scopus 로고    scopus 로고
    • Pruned median networks: A technique for reducing the complexity of median networks
    • Huber, K., V. Moulton, P. J. Lockhart, and A. Dress. 2001. Pruned median networks: A technique for reducing the complexity of median networks. Mol. Phylogenet. Evol. 19:302-310.
    • (2001) Mol. Phylogenet. Evol. , vol.19 , pp. 302-310
    • Huber, K.1    Moulton, V.2    Lockhart, P.J.3    Dress, A.4
  • 22
    • 0031678692 scopus 로고    scopus 로고
    • SplitsTree: Analysing and visualizing evolutionary data
    • Huson, D. H. 1998. SplitsTree: Analysing and visualizing evolutionary data. Bioinformatics 14:68-73.
    • (1998) Bioinformatics , vol.14 , pp. 68-73
    • Huson, D.H.1
  • 23
    • 15944389732 scopus 로고    scopus 로고
    • Huson, D. H., and D. Bryant. 2004. SplitsTree4.0 beta 06. Distributed by the authors (http://www-ab.informatik.uni-tuebingen.de/software/jsplits/ welcome_en.htm).
    • (2004) SplitsTree4.0 Beta 06
    • Huson, D.H.1    Bryant, D.2
  • 24
    • 1242300247 scopus 로고    scopus 로고
    • Quaternary diversification in European alpine plants: Pattern and process
    • Kadereit, J. W., E. M. Griebeler, and H. P. Comes. 2004. Quaternary diversification in European alpine plants: pattern and process. Phil. Trans. R. Soc. Lond. B 359:265-274.
    • (2004) Phil. Trans. R. Soc. Lond. B , vol.359 , pp. 265-274
    • Kadereit, J.W.1    Griebeler, E.M.2    Comes, H.P.3
  • 25
    • 0036246561 scopus 로고    scopus 로고
    • Multilocus sequence typing for characterization of clinical and environmental salmonella strains
    • Kotetishvili, M., O. C. Stine, A. Kreger, J. G. Morris, and A. Sulakvelidze. 2002. Multilocus sequence typing for characterization of clinical and environmental salmonella strains. J. Clin. Microbiol. 40:1626-1635.
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 1626-1635
    • Kotetishvili, M.1    Stine, O.C.2    Kreger, A.3    Morris, J.G.4    Sulakvelidze, A.5
  • 26
    • 0036554652 scopus 로고    scopus 로고
    • Reconstruction of biogeographic and evolutionary networks using reticulograms
    • Legendre, P., and V. Makarenkov. 2002. Reconstruction of biogeographic and evolutionary networks using reticulograms. Syst. Biol. 51:199-216.
    • (2002) Syst. Biol. , vol.51 , pp. 199-216
    • Legendre, P.1    Makarenkov, V.2
  • 27
    • 0034792017 scopus 로고    scopus 로고
    • Phylogeny, dispersal and radiation of New Zealand alpine buttercups: Molecular evidence under split decomposition
    • Lockhart, P. J., P. A. McLenachan, D. Havell, G. Glenny, D. Huson, and U. Jensen. 2001. Phylogeny, dispersal and radiation of New Zealand alpine buttercups: Molecular evidence under split decomposition. Ann. Mo. Bot. Gard. 88:458-477.
    • (2001) Ann. Mo. Bot. Gard. , vol.88 , pp. 458-477
    • Lockhart, P.J.1    McLenachan, P.A.2    Havell, D.3    Glenny, G.4    Huson, D.5    Jensen, U.6
  • 28
    • 1842502896 scopus 로고    scopus 로고
    • From a phylogenetic tree to a reticulated network
    • Makarenkov, V., and P. Legendre. 2004. From a phylogenetic tree to a reticulated network. J. Comp. Biol. 11:195-212.
    • (2004) J. Comp. Biol. , vol.11 , pp. 195-212
    • Makarenkov, V.1    Legendre, P.2
  • 29
    • 0000909802 scopus 로고
    • The pitfalls of molecular phylogeny based on four species, as illustrated by the cetaceae/artiodactyla relationship
    • Philippe, H., and E. Douzery. 1994. The pitfalls of molecular phylogeny based on four species, as illustrated by the cetaceae/artiodactyla relationship. J. Mamm. Evol. 2:133-152.
    • (1994) J. Mamm. Evol. , vol.2 , pp. 133-152
    • Philippe, H.1    Douzery, E.2
  • 30
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • Posada, D., and K. A. Crandall. 1998. Modeltest: Testing the model of DNA substitution. Bioinformatics 14:817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 31
    • 0035139147 scopus 로고    scopus 로고
    • Intraspecific gene genealogies: Trees grafting into networks
    • Posada, D., and K. A. Crandall. 2001. Intraspecific gene genealogies: Trees grafting into networks. Trends Ecol. Evol. 16:37-45.
    • (2001) Trends Ecol. Evol. , vol.16 , pp. 37-45
    • Posada, D.1    Crandall, K.A.2
  • 32
    • 0034983479 scopus 로고    scopus 로고
    • Quartet-based phylogenetic inference: Improvements and limits
    • Ranwez, V., and O. Gascuel. 2001. Quartet-based phylogenetic inference: Improvements and limits. Mol. Biol. Evol. 18:1103-1116.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1103-1116
    • Ranwez, V.1    Gascuel, O.2
  • 33
    • 0035929227 scopus 로고    scopus 로고
    • Rapid diversification of a species-rich genus of neotropical rain forest trees
    • Richardson, J. E., R. T. Pennington, T. D. Pennington, and P. M. Hollingsworth. 2001. Rapid diversification of a species-rich genus of neotropical rain forest trees. Science 293:2242-2245.
    • (2001) Science , vol.293 , pp. 2242-2245
    • Richardson, J.E.1    Pennington, R.T.2    Pennington, T.D.3    Hollingsworth, P.M.4
  • 35
    • 0002443665 scopus 로고
    • Introgression and its consequences in plants
    • (R. G. Harrison, ed). Oxford University Press, Oxford
    • Rieseberg, L. H., and J. F. Wendel. 1993. Introgression and its consequences in plants. Pages 70-109 in Hybrid zones and the evolutionary process (R. G. Harrison, ed). Oxford University Press, Oxford.
    • (1993) Hybrid Zones and the Evolutionary Process , pp. 70-109
    • Rieseberg, L.H.1    Wendel, J.F.2
  • 36
    • 0027185401 scopus 로고
    • Theoretical foundation of the minimum evolution method of phylogenetic inference
    • Rzhetsky, A., and M. Nei. 1993. Theoretical foundation of the minimum evolution method of phylogenetic inference. Mol. Biol. Evol. 10:1073-1095.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 1073-1095
    • Rzhetsky, A.1    Nei, M.2
  • 37
    • 0029125662 scopus 로고
    • Documentation of reticulate evolution in peonies (Paeonia) using internal transcribed spacer sequences of nuclear ribosomal DNA: Implications for biogeography and concerted evolution
    • Sang, T., D. J. Crawford, and T. F. Stuessy. 1995. Documentation of reticulate evolution in peonies (Paeonia) using internal transcribed spacer sequences of nuclear ribosomal DNA: Implications for biogeography and concerted evolution. Proc. Natl. Acad. Sci. USA 92:6813-6817.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 6813-6817
    • Sang, T.1    Crawford, D.J.2    Stuessy, T.F.3
  • 39
    • 0000116956 scopus 로고
    • Chloroplast DNA variation within and among genera of the Heuchera group (Saxifragaceae): Evidence for chloroplast transfer and paraphyly
    • Soltis, D. E., P. S. Soltis, T. G. Collier, and M. L. Edgerton. 1991. Chloroplast DNA variation within and among genera of the Heuchera group (Saxifragaceae): Evidence for chloroplast transfer and paraphyly. Am. J. Bot. 78:1091-1112.
    • (1991) Am. J. Bot. , vol.78 , pp. 1091-1112
    • Soltis, D.E.1    Soltis, P.S.2    Collier, T.G.3    Edgerton, M.L.4
  • 40
    • 0029162810 scopus 로고
    • Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution
    • Song, K., P. Lu, K. Tang, and T. C. Osborn. 1995. Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution. Proc. Natl. Acad. Sci. USA 92:7719-7723.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 7719-7723
    • Song, K.1    Lu, P.2    Tang, K.3    Osborn, T.C.4
  • 41
    • 0037216125 scopus 로고    scopus 로고
    • Reconstructing species phylogeny of carabid beetles Ohomopterus using multiple nuclear DNA sequences: Heterogeneous information content and the performance of simultaneous analyses
    • Sota, T., and A. P. Vogler. 2003. Reconstructing species phylogeny of carabid beetles Ohomopterus using multiple nuclear DNA sequences: Heterogeneous information content and the performance of simultaneous analyses. Mol. Phylogenet. Evol. 26:139-154.
    • (2003) Mol. Phylogenet. Evol. , vol.26 , pp. 139-154
    • Sota, T.1    Vogler, A.P.2
  • 43
    • 85004911403 scopus 로고
    • A fit index for covariance structure models under arbitrary GLS estimation
    • Tanaka, J. S., and G. J. Huba. 1985. A fit index for covariance structure models under arbitrary GLS estimation. Brit. J. Math. Stat. Psychol. 38:197-201.
    • (1985) Brit. J. Math. Stat. Psychol. , vol.38 , pp. 197-201
    • Tanaka, J.S.1    Huba, G.J.2
  • 44
    • 0026662698 scopus 로고
    • A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation
    • Templeton, A. R., K. A. Crandall, and C. F. Sing. 1992. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetic 132:619-633.
    • (1992) Genetic , vol.132 , pp. 619-633
    • Templeton, A.R.1    Crandall, K.A.2    Sing, C.F.3


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