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Volumn 17, Issue 10, 2005, Pages 1735-1746

Spin boson models for quantum decoherence of electronic excitations of biomolecules and quantum dots in a solvent

Author keywords

[No Author keywords available]

Indexed keywords

CELLS; CHROMOPHORES; COHERENT LIGHT; COPPER; ELECTRIC EXCITATION; ELECTROLYTES; ENERGY TRANSFER; FLUORESCENCE; MATHEMATICAL MODELS; MOLECULAR BIOLOGY; MOLECULAR DYNAMICS; PROTEINS; SEMICONDUCTOR QUANTUM DOTS;

EID: 15744393895     PISSN: 09538984     EISSN: None     Source Type: Journal    
DOI: 10.1088/0953-8984/17/10/028     Document Type: Article
Times cited : (87)

References (57)
  • 1
    • 0036530690 scopus 로고    scopus 로고
    • Electronic excitations of biomolecules studied by quantum chemistry
    • Helms V 2002 Electronic excitations of biomolecules studied by quantum chemistry Curr. Opin. Struct. Biol. 12 169-175
    • (2002) Curr. Opin. Struct. Biol. , vol.12 , pp. 169-175
    • Helms, V.1
  • 2
    • 0031210512 scopus 로고    scopus 로고
    • How nature harvests sunlight
    • Hu X and Schulten K 1997 How nature harvests sunlight Phys. Today 50 (8) 28-34
    • (1997) Phys. Today , vol.50 , Issue.8 , pp. 28-34
    • Hu, X.1    Schulten, K.2
  • 4
    • 41349092888 scopus 로고    scopus 로고
    • Excitons in a photosynthetic light-harvesting system: A combined molecular dynamics, quantum chemistry, and polaron model system
    • Damjanovic A, Kosztin I, Kleinekathfer U and Schulten K 2002 Excitons in a photosynthetic light-harvesting system: a combined molecular dynamics, quantum chemistry, and polaron model system Phys. Rev. E 65 031919
    • (2002) Phys. Rev. E , vol.65 , pp. 031919
    • Damjanovic, A.1    Kosztin, I.2    Kleinekathfer, U.3    Schulten, K.4
  • 5
    • 0033638275 scopus 로고    scopus 로고
    • Self-assembled nanostructures based on DNA: Towards the development of nanobiotechnology
    • Niemeyer C M 2000 Self-assembled nanostructures based on DNA: towards the development of nanobiotechnology Curr. Opin. Struct. Biol. 4 609-18
    • (2000) Curr. Opin. Struct. Biol. , vol.4 , pp. 609-618
    • Niemeyer, C.M.1
  • 7
    • 0000606175 scopus 로고    scopus 로고
    • Biomolecular electronics: Protein-based associative processors and volumetric memories
    • Birge R R et al 1999 Biomolecular electronics: protein-based associative processors and volumetric memories J. Phys. Chem. B 103 10746
    • (1999) J. Phys. Chem. B , vol.103 , pp. 10746
    • Birge, R.R.1
  • 9
    • 4143148140 scopus 로고    scopus 로고
    • Optical schemes for quantum computation in quantum dot molecules
    • Lovett B W, Reina J H, Nazir A and Briggs GAD 2003 Optical schemes for quantum computation in quantum dot molecules Phys. Rev. B 68 205319
    • (2003) Phys. Rev. B , vol.68 , pp. 205319
    • Lovett, B.W.1    Reina, J.H.2    Nazir, A.3    Gad, B.4
  • 10
    • 0041320967 scopus 로고    scopus 로고
    • Molecular dynamics simulation of bacteriorhodopsin's photoisomerization using ab initio forces for the excited chromophore
    • Hayashi S, Tajkhorshid E and Schulten K 2003 Molecular dynamics simulation of bacteriorhodopsin's photoisomerization using ab initio forces for the excited chromophore Biophys. J. 85 1440-9
    • (2003) Biophys. J. , vol.85 , pp. 1440-1449
    • Hayashi, S.1    Tajkhorshid, E.2    Schulten, K.3
  • 11
    • 0030495574 scopus 로고    scopus 로고
    • Diabolical conical intersections
    • Yarkony D R 1996 Diabolical conical intersections Rev. Mod. Phys. 68 985-1013
    • (1996) Rev. Mod. Phys. , vol.68 , pp. 985-1013
    • Yarkony, D.R.1
  • 12
    • 0034647672 scopus 로고    scopus 로고
    • Characterization of a conical intersection between the ground and first excited state for a retinal analog
    • Molnar F et al 2000 Characterization of a conical intersection between the ground and first excited state for a retinal analog J. Mol. Struct. (Theochem) 506 169-78
    • (2000) J. Mol. Struct. (Theochem) , vol.506 , pp. 169-178
    • Molnar, F.1
  • 13
    • 0001084973 scopus 로고    scopus 로고
    • Quantum-mechanical modeling of the femtosecond isomerization in rhodopsin
    • Hahn S and Stock G 2000 Quantum-mechanical modeling of the femtosecond isomerization in rhodopsin J. Phys. Chem. B 104 1146-9
    • (2000) J. Phys. Chem. B , vol.104 , pp. 1146-1149
    • Hahn, S.1    Stock, G.2
  • 14
    • 0028295796 scopus 로고
    • Resonance energy transfer: Methods and applications
    • Wu P G and Brand L 1994 Resonance energy transfer: methods and applications Anal. Biochem. 218 1-13
    • (1994) Anal. Biochem. , vol.218 , pp. 1-13
    • Wu, P.G.1    Brand, L.2
  • 15
    • 0035366378 scopus 로고    scopus 로고
    • Single-molecule fluorescence methods for the study of nucleic acids
    • Ha T 2001 Single-molecule fluorescence methods for the study of nucleic acids Curr. Opin. Struct. Biol. 11 287-92
    • (2001) Curr. Opin. Struct. Biol. , vol.11 , pp. 287-292
    • Ha, T.1
  • 18
    • 21744452904 scopus 로고
    • Coupling of protein motion to electron transfer in a photosynthetic reaction center: Investigating the low temperature behavior in the framework of the spin-boson model
    • Xu D and Schulten K 1994 Coupling of protein motion to electron transfer in a photosynthetic reaction center: investigating the low temperature behavior in the framework of the spin-boson model Chem. Phys. 182 91-117
    • (1994) Chem. Phys. , vol.182 , pp. 91-117
    • Xu, D.1    Schulten, K.2
  • 19
    • 0037042612 scopus 로고    scopus 로고
    • On the relation of protein dynamics and exciton relaxation in pigment-protein complexes: An estimation of the spectral density and a theory for the calculation of optical spectra
    • Renger T and Marcus R A 2002 On the relation of protein dynamics and exciton relaxation in pigment-protein complexes: an estimation of the spectral density and a theory for the calculation of optical spectra J. Chem. Phys. 1169997-10019
    • (2002) J. Chem. Phys. , vol.116 , pp. 9997-10019
    • Renger, T.1    Marcus, R.A.2
  • 21
    • 0035535325 scopus 로고    scopus 로고
    • Quantum-state engineering with Josephson-junction devices
    • Makhlin Y, Schön G and Shnirman A 2001 Quantum-state engineering with Josephson-junction devices Rev. Mod. Phys. 73 357-400
    • (2001) Rev. Mod. Phys. , vol.73 , pp. 357-400
    • Makhlin, Y.1    Schön, G.2    Shnirman, A.3
  • 22
    • 0343791148 scopus 로고
    • Electric moments of molecules in liquids
    • Onsager L 1936 Electric moments of molecules in liquids J. Am. Chem. Soc. 58 1486-93
    • (1936) J. Am. Chem. Soc. , vol.58 , pp. 1486-1493
    • Onsager, L.1
  • 23
    • 0000449341 scopus 로고
    • ed J R Lakowicz (New York: Plenum) chapter 8
    • Nemkovich N A et al 1991 Topics in Fluorescence Spectroscopy vol 2, ed J R Lakowicz (New York: Plenum) chapter 8, pp 367-425
    • (1991) Topics in Fluorescence Spectroscopy , vol.2 , pp. 367-425
    • Nemkovich, N.A.1
  • 24
    • 0035312551 scopus 로고    scopus 로고
    • Macromolecular electrostatics: Continuum models and their growing pains
    • Simonson T 2001 Macromolecular electrostatics: continuum models and their growing pains Curr. Opin. Struct. Biol. 114 243-52
    • (2001) Curr. Opin. Struct. Biol. , vol.114 , pp. 243-252
    • Simonson, T.1
  • 26
    • 11744256643 scopus 로고
    • Molecular interactions in solution: An overview of methods based on continuous distributions of the solvent
    • Tomasi J and Persico M 1994 Molecular interactions in solution: an overview of methods based on continuous distributions of the solvent Chem. Rev. 94 2027-94
    • (1994) Chem. Rev. , vol.94 , pp. 2027-2094
    • Tomasi, J.1    Persico, M.2
  • 32
    • 0242442489 scopus 로고    scopus 로고
    • Entanglement between a qubit and the environment in the spin-boson model
    • Costi T A and McKenzie R H 2003 Entanglement between a qubit and the environment in the spin-boson model Phys. Rev. A 68 034301
    • (2003) Phys. Rev. A , vol.68 , pp. 034301
    • Costi, T.A.1    McKenzie, R.H.2
  • 33
    • 18344380226 scopus 로고
    • Quantum tunnelling in a dissipative system
    • Caldeira A O and Leggett A J 1983 Quantum tunnelling in a dissipative system Ann. Phys. 149 374-456
    • (1983) Ann. Phys. , vol.149 , pp. 374-456
    • Caldeira, A.O.1    Leggett, A.J.2
  • 35
    • 0000465796 scopus 로고    scopus 로고
    • Time-dependent Stokes shift and its calculation from solvent dielectric dispersion data
    • Hsu C P, Song H and Marcus R A 1997 Time-dependent Stokes shift and its calculation from solvent dielectric dispersion data J. Phys. Chem. B 101 2546-51
    • (1997) J. Phys. Chem. B , vol.101 , pp. 2546-2551
    • Hsu, C.P.1    Song, H.2    Marcus, R.A.3
  • 36
    • 33847327575 scopus 로고
    • The fluctuation-dissipation theorem
    • Kubo R 1966 The fluctuation-dissipation theorem Rep. Prog. Phys. I 29 255-84
    • (1966) Rep. Prog. Phys. I , vol.29 , pp. 255-284
    • Kubo, R.1
  • 37
    • 36849107433 scopus 로고
    • Theory of dielectric relaxation in polar liquids
    • Nee T W and Zwanzig R 1970 Theory of dielectric relaxation in polar liquids J. Chem. Phys. 42 6353-63
    • (1970) J. Chem. Phys. , vol.42 , pp. 6353-6363
    • Nee, T.W.1    Zwanzig, R.2
  • 38
    • 0030829182 scopus 로고    scopus 로고
    • Continuum estimates of rotational dielectric friction and polar solvation
    • Maroncelli M 1997 Continuum estimates of rotational dielectric friction and polar solvation J. Chem. Phys. 106 1545-55
    • (1997) J. Chem. Phys. , vol.106 , pp. 1545-1555
    • Maroncelli, M.1
  • 39
    • 0000537506 scopus 로고
    • Quantum correction for electron transfer rates. Comparison of polarizable versus nonpolarizable descriptions of solvent
    • Song X and Marcus R A 1993 Quantum correction for electron transfer rates. Comparison of polarizable versus nonpolarizable descriptions of solvent J. Chem. Phys. 99 7768-73
    • (1993) J. Chem. Phys. , vol.99 , pp. 7768-7773
    • Song, X.1    Marcus, R.A.2
  • 40
    • 33748552723 scopus 로고    scopus 로고
    • Far-infrared dielectric properties of polar liquids probed by femtosecond terahertz pulse Spectroscopy
    • Kindt J T and Schmuttenmaer C A 1996 Far-infrared dielectric properties of polar liquids probed by femtosecond terahertz pulse Spectroscopy J. Phys. Chem. 100 10373-9
    • (1996) J. Phys. Chem. , vol.100 , pp. 10373-10379
    • Kindt, J.T.1    Schmuttenmaer, C.A.2
  • 41
    • 0000336966 scopus 로고
    • High frequency permittivity and its use in the investigation of solution properties
    • Barthel J and Buchner R 1991 High frequency permittivity and its use in the investigation of solution properties Pure Appl. Chem. 63 1473-83
    • (1991) Pure Appl. Chem. , vol.63 , pp. 1473-1483
    • Barthel, J.1    Buchner, R.2
  • 42
    • 0018155593 scopus 로고
    • Submillimetre wave measurements of optical constants of water at various temperatures
    • Afsar M N and Hasted J B 1978 Submillimetre wave measurements of optical constants of water at various temperatures Infrared Phys. 18 835-41
    • (1978) Infrared Phys. , vol.18 , pp. 835-841
    • Afsar, M.N.1    Hasted, J.B.2
  • 45
    • 36449001348 scopus 로고
    • Rotational dielectric friction and dipole solvation: Tests of theory based on simulations of simple model solutions
    • Papazyan A and Maroncelli M 1995 Rotational dielectric friction and dipole solvation: tests of theory based on simulations of simple model solutions J. Chem. Phys. 102 2888-919
    • (1995) J. Chem. Phys. , vol.102 , pp. 2888-2919
    • Papazyan, A.1    Maroncelli, M.2
  • 46
    • 33947550049 scopus 로고
    • Solvent effects in organic spectra: Dipole forces and the Franck-Condon principle
    • Bayliss N and McRae E G 1954 Solvent effects in organic spectra: dipole forces and the Franck-Condon principle J. Am. Chem. Soc. 58 1002-11
    • (1954) J. Am. Chem. Soc. , vol.58 , pp. 1002-1011
    • Bayliss, N.1    McRae, E.G.2
  • 47
    • 0000512535 scopus 로고    scopus 로고
    • Molecular electronic spectral broadening in liquids and glasses
    • Myers A B 1998 Molecular electronic spectral broadening in liquids and glasses Annu. Rev. Phys. Chem. 49 267-95
    • (1998) Annu. Rev. Phys. Chem. , vol.49 , pp. 267-295
    • Myers, A.B.1
  • 48
    • 0035846381 scopus 로고    scopus 로고
    • Spectral tuning of photoactive yellow protein, theoretical and experimental analysis of medium effects on the absorption spectrum of the chromophore
    • Yoda M, Houjou H, Inoue Y and Sakurai M 2001 Spectral tuning of photoactive yellow protein, theoretical and experimental analysis of medium effects on the absorption spectrum of the chromophore J. Phys. Chem. B 105 9887-95
    • (2001) J. Phys. Chem. B , vol.105 , pp. 9887-9895
    • Yoda, M.1    Houjou, H.2    Inoue, Y.3    Sakurai, M.4
  • 49
    • 0037133274 scopus 로고    scopus 로고
    • The role of intersection topography in bond selectivity of cis-trans photoisomerization
    • Ben-Nun M, Molnar F, Schulten K and Martinez T J 2002 The role of intersection topography in bond selectivity of cis-trans photoisomerization Proc. Natl Acad. Sci. USA 99 1769
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 1769
    • Ben-Nun, M.1    Molnar, F.2    Schulten, K.3    Martinez, T.J.4
  • 51
    • 5644259862 scopus 로고    scopus 로고
    • Environmental effects on a conical intersection: A model study
    • Burghardt I, Cederbaumb L S and Hynes J T 2004 Environmental effects on a conical intersection: a model study Faraday Discuss. 127 395
    • (2004) Faraday Discuss. , vol.127 , pp. 395
    • Burghardt, I.1    Cederbaumb, L.S.2    Hynes, J.T.3
  • 52
    • 0012916676 scopus 로고
    • Dynamics with the effective adiabatic theory: The Bloch equations
    • Carmeli B and Chandler D 1988 Dynamics with the effective adiabatic theory: the Bloch equations J. Chem. Phys. 89452-8
    • (1988) J. Chem. Phys. , vol.89 , pp. 452-458
    • Carmeli, B.1    Chandler, D.2
  • 54
    • 0002413436 scopus 로고
    • Delocalized excitation and excitation transfer
    • ed O Sinanoglu (New York: Academic)
    • Förster T 1965 Delocalized excitation and excitation transfer Modern Quantum Chemistry vol 3, ed O Sinanoglu (New York: Academic) pp 93-137
    • (1965) Modern Quantum Chemistry , vol.3 , pp. 93-137
    • Förster, T.1
  • 57
    • 0036140806 scopus 로고    scopus 로고
    • Dipolar coupling between electronic transitions of DNA bases and its relevance for exciton states in double helices
    • Bouvier B, Gustavsson T, Markovitsi D and Millié P 2002 Dipolar coupling between electronic transitions of DNA bases and its relevance for exciton states in double helices Chem. Phys. 275 75
    • (2002) Chem. Phys. , vol.275 , pp. 75
    • Bouvier, B.1    Gustavsson, T.2    Markovitsi, D.3    Millié, P.4


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