Nitrile pathway involving acyl-CoA synthetase: Overall metabolic gene organization and purification and characterization of the enzyme

Journal of Biological Chemistry

Volumn 280, Issue 10, 2005, Pages 8660-8667

  Hashimoto, Yoshiteru ^a   Hosaka, Hideaki ^a   Oinuma, Ken Ichi ^a   Goda, Masahiko ^a   Higashibata, Hiroki ^a   Kobayashi, Michihiko ^a  

^a UNIVERSITY OF TSUKUBA   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; CATALYSIS; ESCHERICHIA COLI; GENES; MASS SPECTROMETRY; PURIFICATION; SUBSTRATES;

BUTYRIC ACID; CATALYTIC EFFICIENCIES; GENE CLUSTERS; NITROGEN SOURCES;

ENZYMES;

ALDOXIME; AMIDASE; HYDROLYASE; LONG CHAIN FATTY ACID COENZYME A LIGASE; NITRILE; NITRILE HYDRATASE;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME PURIFICATION; ESCHERICHIA COLI; GENE CLUSTER; GENETIC ORGANIZATION; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MICROBIAL METABOLISM; NONHUMAN; PRIORITY JOURNAL;

BASE SEQUENCE; CODON; COENZYME A LIGASES; DNA PRIMERS; ESCHERICHIA COLI; KINETICS; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; NITRILES; OPEN READING FRAMES; PSEUDOMONAS; RECOMBINANT PROTEINS; SUBSTRATE SPECIFICITY; THERMODYNAMICS;

ESCHERICHIA COLI; PSEUDOMONAS; PSEUDOMONAS CHLORORAPHIS;

EID: 15744392913     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M405686200     Document Type: Article

References (58)

1. Kobayashi, M., and Shimizu, S. (1998) Nat. Biotechnol. 16, 733-736
2. Kobayashi, M., and Shimizu, S. (2000) Curr. Opin. Chem. Biol. 4, 95-102
3. Komeda, H., Kobayashi, M., and Shimizu, S. (1996) J. Biol. Chem. 271, 15796-15802
4. Komeda, H., Kobayashi, M., and Shimizu, S. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 4267-4272
5. Kobayashi, M., Komeda, H., Yanaka, N., Nagasawa, T., and Yamada, H. (1992) J. Biol. Chem. 267, 20746-20751
6. Goda, M., Hashimoto, Y., Shimizu, S., and Kobayashi, M. (2001) J. Biol. Chem. 276, 23480-23485
7. Goda, M., Hashimoto, Y., Takase, M., Herai, S., Iwahara, Y., Higashibata, H., and Kobayashi, M. (2002) J. Biol. Chem. 277, 45860-45865
8. Fukatsu, H., Hashimoto, Y., Goda, M., Higashibata, H., and Kobayashi, M. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 13726-13731
9. Kobayashi, M., Nagasawa, T., and Yamada, H. (1992) Trends Biotechnol. 10, 402-408
10. Yamada, H., and Kobayashi, M. (1996) Biosci. Biotechnol. Biochem. 60, 1391-1400
11. Kobayashi, M., and Shimizu, S. (1994) FEMS Microbiol. Lett. 120, 217-224
12. Kobayashi, M., Yanaka, N., Nagasawa, T., and Yamada, H. (1992) Biochemistry 31, 9000-9007
13. Komeda, H., Hori, Y., Kobayashi, M., and Shimizu, S. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 10572-10577
14. Kobayashi, M., Izui, H., Nagasawa, T., and Yamada, H. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 247-251
15. Kobayashi, M., Suzuki, T., Fujita, T., Masuda, M., and Shimizu, S. (1995) Proc. Natl. Acad. Sci. U. S. A. 92, 714-718
16. Kobayashi, M., and Shimizu, S. (1999) Eur. J. Biochem. 261, 1-9
17. Asano, Y., Tani, Y., and Yamada, H. (1980) Agric. Biol. Chem. 44, 2251-2252
18. Popescu, V. C., Munck, E., Fox, B. G., Sanakis, Y., Cummings, J. G., Turner, I. M., Jr., and Nelson, M. J. (2001) Biochemistry 40, 7984-7991
19. Kobayashi, M., Fujiwara, Y., Goda, M., Komeda, H., and Shimizu, S. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 11986-11991
20. Kobayashi, M., Goda, M., and Shimizu, S. (1998) FEBS Lett. 439, 325-328
21. Kobayashi, M., Komeda, H., Nagasawa, T., Nishiyama, M., Horinouchi, S., Beppu, T., Yamada, H., and Shimizu, S. (1993) Eur. J. Biochem. 217, 327-336
22. Yamada, H., Shimizu, S., and Kobayashi, M. (2001) Chemical Records 1, 152-161
23. Herai, S., Hashimoto, Y., Higashibata, H., Maseda, H., Ikeda, H., Omura, S., and Kobayashi, M. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 14031-14035
24. Normanly, J., Grisafi, P., Fink, G. R., and Bartel, B. (1997) Plant Cell 10, 1781-1790
25. Bartling, D., Seedorf, M., Schmidt, R. C., and Weiler, E. W. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 6021-6025
26. Pekarsky, Y., Campiglio, M., Siprashvili, Z., Druck, T., Sedkov, Y., Tillib, S., Draganescu, A., Wermuth, P., Rothman, J. H., Huebner, K., Buchberg, A. M., Mazo, A., Brenner, C., and Croce, C. M. (1998) Proc. Natl. Acad. Sci. U.S.A. 95, 8744-8749
27. Endo, I., Odaka, M., and Yohda, M. (1999) Trends Biotechnol. 17, 244-248
28. Cravatt, B. F., Giang, D. K., Mayfield, S. P., Boger, D. L., Lerner, R. A., and Gilula, N. B. (1996) Nature 384, 83-87
29. Nagasawa, T., Nanba, H., Ryuno, K., Takeuchi, K., and Yamada, H. (1987) Eur. J. Biochem. 162, 691-698
30. Hann, E. C., Eisenberg, A., Fager, S. K., Perkins, N. E., Gallagher, F. G., Cooper, S. M., Gavagan, J. E., Stieglitz, B., Hennessey, S. M., and DiCosimo, R. (1999) Bioorg. Med. Chem. 7, 2239-2245
31. Nagasawa, T., Ryuno, K., and Yamada, H. (1989) Experientia (Basel) 45, 1066-1070
32. Nishiyama, M., Horinouchi, S., Kobayashi, M., Nagasawa, T., Yamada, H., and Beppu, T. (1991) J. Bacteriol. 173, 2465-2472
33. Oinuma, K.-I., Hashimoto, Y., Konishi, K., Goda, M., Noguchi, T., Higashibata, H., and Kobayashi, M. (2003) J. Biol. Chem. 278, 29600-29608
34. Oinuma, K.-I., Ohta, T., Konishi, K., Hashimoto, Y., Higashibata, H., Kitagawa, T., and Kobayashi, M. (2004) FEBS Lett. 568, 44-48
35. Konishi, K., Ishida, K., Oinuma, K.-I., Ohta, T., Hashimoto, Y., Higashibata, H., Kitagawa, T., and Kobayashi, M. (2004) J. Biol. Chem. 279, 47619-47625
36. Yanisch-Perron, C., Yieira, J., and Messing, J. (1985) Gene (Amst.) 33, 103-119
37. Kamari, S., Tishel, R., Eisenbach, M., and Wolfe, A. J. (1995) J. Bacteriol. 117, 2878-2886
38. Overath, P., Pauli, G., and Schairer, H. U. (1969) Eur. J. Biochem. 7, 559-574
39. Maniatis, T., Fritsch, E. F., and Sambrook, J. (1989) Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
40. Kasuya, F., Igarashi, K., and Fukui, M. (1996) Biochem. Pharmacol. 51, 805-809
41. Laemmli, U. K. (1970) Nature 227, 680-685
42. Olivera, E. R., Carnicero, D., García, B., Miñambres, B., Moreno, M. A., Cañedo, L., DiRusso, C. C., Naharro, G., and Luengo, J. M. (2001) Mol. Microbiol. 39, 863-874
43. Black, P. N., DiRusso, C. C., Metzger, A. K., and Heimert, T. L. (1992) J. Biol. Chem. 267, 25513-25520
44. Black, P. N., and DiRusso, C. C. (2003) Microbiol Mol. Biol. Rev. 67, 454-472
45. Conti, E., Stachelhaus, T., Marahiel, M. A., and Brick, P. (1997) EMBO J. 16, 4174-4183
46. Black, P. N., Zhang, Q., Weimar, J. D., and DiRusso, C. C. (1997) J. Biol. Chem. 272, 4896-4903
47. Martínez-Blanco, H., Regleno, A., Rodríguez-Aparicio, L. B., and Luengo, J. M. (1990) J. Biol. Chem. 265, 7084-7090
48. Martínez-Blanco, H., Regleno, A., Fernández-Valverde, M., Ferrero, M. A., Moreno, M. A., Penalva, M. A., and Luengo, J. M. (1992) J. Biol. Chem. 267, 5474-5481
49. Komeda, K., Suzuki, L. K., and Imai, Y. (1985) Biochim. Biophys. Acta 840, 29-36
50. Shimizu, S., Inoue, K., Tani, Y., and Yamada, H. (1981) Biochem. Biophys. Res. Commun. 103, 1231-1237
51. Ciskanik, L. M., Wilczek, J. M., and Fallen, R. D. (1995) Appl. Environ. Microbiol. 61, 998-1003
52. Hansen, C. H., Du, L., Naur, P., Olsen, C. E., Axelsen, K. B., Hick, A. J., Pickett, J. A., and Halkier, B. A. (2001) J. Biol. Chem. 276, 24790-24796
53. Hull, A. K., Vij, R., and Celenza, J. L. (2000) Proc. Natl. Acad. Sci. U. S. A. 97, 2379-2384
54. Hansen, C. H., Wittstock, U., Olsen, C. E., Hick, A. J., Pickett, J. A., and Halkier, B. A. (2001) J. Biol. Chem. 276, 11078-11085
55. Reintanz, B., Lehnen, M., Reichelt, M., Gershenzon, J., Kowalczyk, M., Sandberg, G., Godde, M., Uhl, R., and Palme, K. (2001) Plant Cell 13, 351-367
56. Faergeman, N. J., and Knudsen, J. (1997) Biochem. J. 323, 1-12
57. Pauli, G., Ehring, R., and Overath, P. (1974) J. Bacteriol. 117, 1178-1183
58. Clark, D. (1981) J. Bacteriol. 148, 521-526