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Journal of Physical Chemistry B

Volumn 109, Issue 11, 2005, Pages 5312-5330

Folding time distributions as an approach to protein folding kinetics

(3) Chekmarev, Sergei F a Krivov, Sergei V b Karplus, Martin b,c

a KUTATELADZE INSTITUTE OF THERMOPHYSICS (Russian Federation)

b UNIVERSITÉ LOUIS PASTEUR (France)

c HARVARD UNIVERSITY (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CUBIC LATTICES; FOLDING TIME DISTRIBUTIONS; HETEROPOLYMERS; PROTEIN FOLDING KINETICS;

COMPUTER SIMULATION; DEGREES OF FREEDOM (MECHANICS); ENZYME KINETICS; FREE ENERGY; HYDROPHOBICITY; MATHEMATICAL MODELS; MONTE CARLO METHODS; RATE CONSTANTS;

PROTEINS;

ARTICLE; KINETICS; MONTE CARLO METHOD; PROTEIN FOLDING;

KINETICS; MONTE CARLO METHOD; PROTEIN FOLDING;

EID: 15744367365 PISSN: 15206106 EISSN: None Source Type: Journal
DOI: 10.1021/jp047012h Document Type: Article

Times cited : (27)

References (62)

1
- 0009586942
- Dinner, A. A.; Sali, A.; Smith, L.; Dobson, C. M.; Karplus, M. Trends Biol. Sci. 2000, 25, 331-339.
- (2000) Trends Biol. Sci. , vol.25 , pp. 331-339
- Dinner, A.A.¹ Sali, A.² Smith, L.³ Dobson, C.M.⁴ Karplus, M.⁵

2
- 0037317334
- Dobson, C. M. Nat. Rev. 2003, 2, 154-160.
- (2003) Nat. Rev. , vol.2 , pp. 154-160
- Dobson, C.M.¹

3
- 0002006297
- Levinthal, C. J. Chim. Phys. 1968, 65, 44-45.
- (1968) J. Chim. Phys. , vol.65 , pp. 44-45
- Levinthal, C.¹

4
- 0017251893
- Karplus, M.; Weaver, D. L. Nature 1976, 260, 404-406.
- (1976) Nature , vol.260 , pp. 404-406
- Karplus, M.¹ Weaver, D.L.²

5
- 0022423920
- Dill, K. A. Biochemistry 1985, 24, 1501-1509.
- (1985) Biochemistry , vol.24 , pp. 1501-1509
- Dill, K.A.¹

6
- 0028024928
- Abkevich, V. I.; Gulin, A. M.; Shakhnovich, E. I. Biochemistry 1994, 33, 10026-10036.
- (1994) Biochemistry , vol.33 , pp. 10026-10036
- Abkevich, V.I.¹ Gulin, A.M.² Shakhnovich, E.I.³

7
- 0036307683
- Islam, S. A.; Karplus, M.; Weaver, D. L. J. Mol. Biol. 2002, 318, 199-215.
- (2002) J. Mol. Biol. , vol.318 , pp. 199-215
- Islam, S.A.¹ Karplus, M.² Weaver, D.L.³

8
- 0028776642
- Baldwin, R. L. Nature 1994, 369, 183-184.
- (1994) Nature , vol.369 , pp. 183-184
- Baldwin, R.L.¹

9
- 0016671420
- Ptitsyn, O. B.; Rushin, A. A. Biophys. Chem. 1975, 3, 1-20.
- (1975) Biophys. Chem. , vol.3 , pp. 1-20
- Ptitsyn, O.B.¹ Rushin, A.A.²

10
- 0020972782
- Gō, N. Annu. Rev. Biophys. Bioeng. 1983, 12, 183-210.
- (1983) Annu. Rev. Biophys. Bioeng. , vol.12 , pp. 183-210
- Go, N.¹

11
- 0001756859
- Harrison, S. C.; Durbin, R. Proc. Natl. Acad. Sci. U.S.A. 1985, 82, 4028-4030.
- (1985) Proc. Natl. Acad. Sci. U.S.A. , vol.82 , pp. 4028-4030
- Harrison, S.C.¹ Durbin, R.²

12
- 0024733407
- Bryngelson, J. D.; Wolynes, P. G. J. Phys. Chem. 1989, 93, 6902-6915.
- (1989) J. Phys. Chem. , vol.93 , pp. 6902-6915
- Bryngelson, J.D.¹ Wolynes, P.G.²

13
- 0026723063
- Leopold, H. E.; Montai, M.; Onuchic, J. N. Proc. Natl. Acad. Sci. U.S.A. 1992, 89,8 721-8725.
- (1992) Proc. Natl. Acad. Sci. U.S.A. , vol.89 , pp. 8721-8725
- Leopold, H.E.¹ Montai, M.² Onuchic, J.N.³

14
- 0028270634
- Sǎli, A.; Shakhnovich, E.; Karplus, M. J. Mol. Biol. 1994, 255, 1614-1636; Sǎli, A.; Shakhnovich, E.; Karplus, M. Nature 1994, 369, 248-251.
- (1994) J. Mol. Biol. , vol.255 , pp. 1614-1636
- Sǎli, A.¹ Shakhnovich, E.² Karplus, M.³

15
- 0028174310
- Sǎli, A.; Shakhnovich, E.; Karplus, M. J. Mol. Biol. 1994, 255, 1614-1636; Sǎli, A.; Shakhnovich, E.; Karplus, M. Nature 1994, 369, 248-251.
- (1994) Nature , vol.369 , pp. 248-251
- Sǎli, A.¹ Shakhnovich, E.² Karplus, M.³

16
- 0028557353
- Pande, V. S.; Grosberg, A. Y.; Tanaka, T. Proc. Natl. Acad. Sci. U.S.A. 1994, 91, 12972-12975.
- (1994) Proc. Natl. Acad. Sci. U.S.A. , vol.91 , pp. 12972-12975
- Pande, V.S.¹ Grosberg, A.Y.² Tanaka, T.³

17
- 0029010695
- Guo, Z. Y.; Thirumalai, D. Biopolymers 1995, 36, 83-102.
- (1995) Biopolymers , vol.36 , pp. 83-102
- Guo, Z.Y.¹ Thirumalai, D.²

18
- 0028882223
- Zwanzig, R. Proc. Natl. Acad. Sci. U.S.A. 1995, 92, 9801-9804.
- (1995) Proc. Natl. Acad. Sci. U.S.A. , vol.92 , pp. 9801-9804
- Zwanzig, R.¹

19
- 1842298212
- Dill, K. A.; Chan, H. S. Nat. Struct. Biol. 1997, 4, 10-19.
- (1997) Nat. Struct. Biol. , vol.4 , pp. 10-19
- Dill, K.A.¹ Chan, H.S.²

20
- 0001712479
- Karplus, M. Fold. Des. 1997, 2, 569-576.
- (1997) Fold. Des. , vol.2 , pp. 569-576
- Karplus, M.¹

21
- 0030628825
- Onuchic, J. N.; Luthey-Schulten, Z.; Wolynes, P. G. Annu. Rev. Phys. Chem. 1997, 48, 545-600.
- (1997) Annu. Rev. Phys. Chem. , vol.48 , pp. 545-600
- Onuchic, J.N.¹ Luthey-Schulten, Z.² Wolynes, P.G.³

22
- 0031960504
- Dobson, C. M.; Šali, A.; Karplus, M. Angew. Chem., Int. Ed. 1998, 37, 869-893.
- (1998) Angew. Chem., Int. Ed. , vol.37 , pp. 869-893
- Dobson, C.M.¹ Šali, A.² Karplus, M.³

23
- 0034743155
- Shea, J.-R.; Brooks, C. L., III Annu. Rev. Phys. Chem. 2001 52, 499-535.
- (2001) Annu. Rev. Phys. Chem. , vol.52 , pp. 499-535
- Shea, J.-R.¹ Brooks III, C.L.²

24
- 0036023918
- Plotkin, S. S.; Onuchic, J. N. Q. Rev. Biophys. 2002, 35, 111-167; 2002 35, 205-286.
- (2002) Q. Rev. Biophys. , vol.35 , pp. 111-167
- Plotkin, S.S.¹ Onuchic, J.N.²

25
- 0036706015
- Plotkin, S. S.; Onuchic, J. N. Q. Rev. Biophys. 2002, 35, 111-167; 2002 35, 205-286.
- (2002) Q. Rev. Biophys. , vol.35 , pp. 205-286

26
- 0031465967
- Lazaridis, T.; Karplus, M. Science 1997, 278, 1928-1931.
- (1997) Science , vol.278 , pp. 1928-1931
- Lazaridis, T.¹ Karplus, M.²

27
- 0028924552
- Wolynes, P. G.; Onuchic, J. N.; Thirumalai, D. Science 1995, 267, 1619-1620.
- (1995) Science , vol.267 , pp. 1619-1620
- Wolynes, P.G.¹ Onuchic, J.N.² Thirumalai, D.³

28
- 0030816577
- Colon, W.; Wakem, L. P.; Sherman, F.; Roder, H. Biochemistry 1997, 36, 12535-12541.
- (1997) Biochemistry , vol.36 , pp. 12535-12541
- Colon, W.¹ Wakem, L.P.² Sherman, F.³ Roder, H.⁴

29
- 0032989351
- Sabelko, J.; Ervin, J.; Gruebele, M. Proc. Nat. Acad. Sci U.S.A. 1999, 96, 6031-6036.
- (1999) Proc. Nat. Acad. Sci U.S.A. , vol.96 , pp. 6031-6036
- Sabelko, J.¹ Ervin, J.² Gruebele, M.³

30
- 18844481606
- Osváth, S.; Sabelko, J.; Gruebele, M. J. Mol. Biol. 2003, 333, 187-199.
- (2003) Mol. Biol. , vol.333 , pp. 187-199
- Osváth, S.¹ Sabelko, J.² Gruebele, M.J.³

31
- 0000370391
- Becker, O. M.; Karplus, M. J. Chem. Phys. 1997, 106, 1495-1517.
- (1997) J. Chem. Phys. , vol.106 , pp. 1495-1517
- Becker, O.M.¹ Karplus, M.²

32
- 0037115811
- Krivov, S. V.; Karplus, M. J. Chem. Phys. 2002, 117, 10894-10903.
- (2002) J. Chem. Phys. , vol.117 , pp. 10894-10903
- Krivov, S.V.¹ Karplus, M.²

33
- 0037460544
- Evans, D. A.; Wales, D. J. J. Chem. Phys. 2003, 118, 3891-3897.
- (2003) J. Chem. Phys. , vol.118 , pp. 3891-3897
- Evans, D.A.¹ Wales, D.J.²

34
- 15744390440
- Kolchanov, N., Hofestaedt, R., Eds.; Kluwer Academic Publishers: Boston
- Gavrilov, A. V.; Chekmarev, S. F. In Bioinformatics of Genome Regulation and Structure; Kolchanov, N., Hofestaedt, R., Eds.; Kluwer Academic Publishers: Boston, 2004; pp 171-178.
- (2004) Bioinformatics of Genome Regulation and Structure , pp. 171-178
- Gavrilov, A.V.¹ Chekmarev, S.F.²

35
- 6944235051
- Krivov, S. V.; Karplus, M. Proc. Nat. Acad. Sci U.S.A. 2004, 101, 14766-14770.
- (2004) Proc. Nat. Acad. Sci U.S.A. , vol.101 , pp. 14766-14770
- Krivov, S.V.¹ Karplus, M.²

36
- 0038502170
- Munoz, V.; Thompson, P.; Hofrichter, J. A.; Eaton, W. A. Nature 1997, 390, 196-199.
- (1997) Nature , vol.390 , pp. 196-199
- Munoz, V.¹ Thompson, P.² Hofrichter, J.A.³ Eaton, W.A.⁴

37
- 0038329308
- Yang, W. Y.; Gruebele, M. Nature 2003, 423, 193-197.
- (2003) Nature , vol.423 , pp. 193-197
- Yang, W.Y.¹ Gruebele, M.²

38
- 3042814557
- Yang, W. Y.; Gruebele, M. Biophys. J. 2004, 87, 596-608.
- (2004) Biophys. J. , vol.87 , pp. 596-608
- Yang, W.Y.¹ Gruebele, M.²

39
- 0032147243
- Socci, N. D.; Onuchic, J.; Wolynes, P. G. Proteins 1998, 32, 136-158.
- (1998) Proteins , vol.32 , pp. 136-158
- Socci, N.D.¹ Onuchic, J.² Wolynes, P.G.³

40
- 0036535895
- Gruebele, M. Curr. Opin. Struct. Biol. 2002, 12, 161-168.
- (2002) Curr. Opin. Struct. Biol. , vol.12 , pp. 161-168
- Gruebele, M.¹

41
- 0037126290
- Schuler, B.: Lipman, E. A.; Eaton, W. A. Nature 2002, 419, 743-747.
- (2002) Nature , vol.419 , pp. 743-747
- Schuler, B.¹ Lipman, E.A.² Eaton, W.A.³

42
- 0000778098
- Metzler, R.; Klafter, J.; Jortner, J.; Volk, M. Chem. Phys. Lett. 1998, 293, 477-484.
- (1998) Chem. Phys. Lett. , vol.293 , pp. 477-484
- Metzler, R.¹ Klafter, J.² Jortner, J.³ Volk, M.⁴

43
- 0000620198
- Skorobogatiy, M.; Guo, H.; Zuckermann, M. J. Chem. Phys. 1998, 109, 2528-2535.
- (1998) J. Chem. Phys. , vol.109 , pp. 2528-2535
- Skorobogatiy, M.¹ Guo, H.² Zuckermann, M.³

44
- 1442324638
- Nakamura, H. K.; Sasai, M.; Takano, M. Proteins 2004, 55, 99-106.
- (2004) Proteins , vol.55 , pp. 99-106
- Nakamura, H.K.¹ Sasai, M.² Takano, M.³

45
- 0001081429
- Saven, J. G.; Wang, G.; Wolynes, P. G. J. Chem. Phys. 1994, 101, 11037-11043.
- (1994) J. Chem. Phys. , vol.101 , pp. 11037-11043
- Saven, J.G.¹ Wang, G.² Wolynes, P.G.³

46
- 0000788389
- Wang, G.; Saven, J. G.; Wolynes, P. G. J. Chem. Phys. 1996, 105, 11276-11284.
- (1996) J. Chem. Phys. , vol.105 , pp. 11276-11284
- Wang, G.¹ Saven, J.G.² Wolynes, P.G.³

47
- 0001209011
- Wang, G.; Onuchic, J.; Wolynes, P. G. Phys. Rev. Lett. 1996, 25, 4861-4864.
- (1996) Phys. Rev. Lett. , vol.25 , pp. 4861-4864
- Wang, G.¹ Onuchic, J.² Wolynes, P.G.³

48
- 0141704162
- Zhou, R. H. Proteins 2003, 53, 148-161.
- (2003) Proteins , vol.53 , pp. 148-161
- Zhou, R.H.¹

49
- 0041842498
- Cavalli, A.; Haberthür, U.; Paci, E.; Caflisch, A. Protein Sci. 2003, 12, 1801-1803.
- (2003) Protein Sci. , vol.12 , pp. 1801-1803
- Cavalli, A.¹ Haberthür, U.² Paci, E.³ Caflisch, A.⁴

50
- 0034685604
- Clementi, C.; Nymeyer, H.; Onuchic, J. N. J. Mol. Biol. 2000, 298, 937-953.
- (2000) J. Mol. Biol. , vol.298 , pp. 937-953
- Clementi, C.¹ Nymeyer, H.² Onuchic, J.N.³

51
- 0035818481
- Li, L.; Shakhnovich, E. I. Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 13014-13018.
- (2001) Proc. Natl. Acad. Sci. U.S.A. , vol.98 , pp. 13014-13018
- Li, L.¹ Shakhnovich, E.I.²

52
- 15744371084
- Paci, E; Caflisch, A.; Vendruscolo, M. (to be published)
- Paci, E; Caflisch, A.; Vendruscolo, M. (to be published).

53
- 0029781355
- Dinner, A. A.; Sali, A.; Karplus, M. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 8356-8361.
- (1996) Proc. Natl. Acad. Sci. U.S.A. , vol.93 , pp. 8356-8361
- Dinner, A.A.¹ Sali, A.² Karplus, M.³

54
- 0031915141
- Dinner, A. A.; Karplus, M. Nat. Struct. Biol. 1998, 5, 236-241.
- (1998) Nat. Struct. Biol. , vol.5 , pp. 236-241
- Dinner, A.A.¹ Karplus, M.²

55
- 0028981210
- Oliveberg, M.; Yan, Y.-J.; Fersht, A. R. Proc. Nat. Acad. Sci. U.S.A. 1995, 92, 8926-8929.
- (1995) Proc. Nat. Acad. Sci. U.S.A. , vol.92 , pp. 8926-8929
- Oliveberg, M.¹ Yan, Y.-J.² Fersht, A.R.³

56
- 0007725036
- Socci, N. D.; Onuchic, J. N. J. Chem. Phys. 1994, 101, 1519-1528.
- (1994) J. Chem. Phys. , vol.101 , pp. 1519-1528
- Socci, N.D.¹ Onuchic, J.N.²

57
- 0001022344
- Gruebele, M. Annu. Rev. Phys. Chem. 1999, 50, 485-516.
- (1999) Annu. Rev. Phys. Chem. , vol.50 , pp. 485-516
- Gruebele, M.¹

58
- 36448999595
- Abkevich, V. I.; Gutin, A. M.; Shaknovich, E. I. J. Chem. Phys. 1994, 101, 6052-6062.
- (1994) J. Chem. Phys. , vol.101 , pp. 6052-6062
- Abkevich, V.I.¹ Gutin, A.M.² Shaknovich, E.I.³

59
- 0033598375
- Zhou, Y.; Karplus, M. Nature 1999, 401, 400-403.
- (1999) Nature , vol.401 , pp. 400-403
- Zhou, Y.¹ Karplus, M.²

60
- 1542513548
- Fernandez, J. M.; Hongbin, L. Science 2004, 303, 1674-1678.
- (2004) Science , vol.303 , pp. 1674-1678
- Fernandez, J.M.¹ Hongbin, L.²

61
- 0016828929
- Austin, R. H.; Beeson, K. W.; Eisenstein, L.; Frauenfelder, H.; Gunsalus, I. C. Biochemistry 1975, 14, 5355-5372.
- (1975) Biochemistry , vol.14 , pp. 5355-5372
- Austin, R.H.¹ Beeson, K.W.² Eisenstein, L.³ Frauenfelder, H.⁴ Gunsalus, I.C.⁵

62
- 0025734848
- Petrich, J. W.; Lambry, J.-C; Kuczera, K.; Karplus, M.; Poyart, C.; Martin, J.-L. Biochemistry 1991, 30, 3975-3987.
- (1991) Biochemistry , vol.30 , pp. 3975-3987
- Petrich, J.W.¹ Lambry, J.-C.² Kuczera, K.³ Karplus, M.⁴ Poyart, C.⁵ Martin, J.-L.⁶

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