메뉴 건너뛰기




Volumn 44, Issue 12, 2005, Pages 4755-4764

Thermochromatium tepidum photoactive yellow protein/bacteriophytochrome/ diguanylate cyclase: Characterization of the PYP domain

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOPHORES; ESCHERICHIA COLI; GENES; IONIZATION; PH EFFECTS; PHYSIOLOGY; REACTION KINETICS;

EID: 15444376178     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi047373n     Document Type: Article
Times cited : (30)

References (34)
  • 1
    • 0022430790 scopus 로고
    • Isolation and characterization of soluble cytochromes, ferredoxins and other chromophoric proteins from the halophilic phototrophic bacterium Ectothiorhodospira halophila
    • Meyer, T. E. (1985) Isolation and characterization of soluble cytochromes, ferredoxins and other chromophoric proteins from the halophilic phototrophic bacterium Ectothiorhodospira halophila, Biochim. Biophys. Acta 806, 175-183.
    • (1985) Biochim. Biophys. Acta , vol.806 , pp. 175-183
    • Meyer, T.E.1
  • 2
    • 0023152468 scopus 로고
    • Properties of a water-soluble, yellow protein isolated from a halophilic phototrophic bacterium that has photochemical activity analogous to sensory rhodopsin
    • Meyer, T. E., Yakali, E., Cusanovich, M. A., and Tollin, G. (1987) Properties of a water-soluble, yellow protein isolated from a halophilic phototrophic bacterium that has photochemical activity analogous to sensory rhodopsin, Biochemistry 26, 418-423.
    • (1987) Biochemistry , vol.26 , pp. 418-423
    • Meyer, T.E.1    Yakali, E.2    Cusanovich, M.A.3    Tollin, G.4
  • 3
    • 0033575370 scopus 로고    scopus 로고
    • Bacterial photoreceptor with similarity to photoactive yellow protein and plant phytochromes
    • Jiang, Z. Y., Swem, L. R., Rushing, B. G., Devanathan, S., Tollin, G., and Bauer, C. E. (1999) Bacterial photoreceptor with similarity to photoactive yellow protein and plant phytochromes, Science 285, 406-409.
    • (1999) Science , vol.285 , pp. 406-409
    • Jiang, Z.Y.1    Swem, L.R.2    Rushing, B.G.3    Devanathan, S.4    Tollin, G.5    Bauer, C.E.6
  • 4
    • 0032568630 scopus 로고    scopus 로고
    • Photoactive yellow protein: A structural prototype for the three-dimensional fold of the PAS domain superfamily
    • Pellequer, J., Wager-Smith, K. A., Kay, S. A., and Getzoff, E. D. (1998) Photoactive yellow protein: A structural prototype for the three-dimensional fold of the PAS domain superfamily, Proc. Natl. Acad. Sci. U.S.A. 95, 5884-5890.
    • (1998) Proc. Natl. Acad. Sci. U.S.A. , vol.95 , pp. 5884-5890
    • Pellequer, J.1    Wager-Smith, K.A.2    Kay, S.A.3    Getzoff, E.D.4
  • 5
    • 0037657894 scopus 로고    scopus 로고
    • Photoactive yellow protein: A prototypic PAS domain sensory protein and development of a common signaling mechanism
    • Cusanovich, M. A., and Meyer, T. E. (2003) Photoactive yellow protein: A prototypic PAS domain sensory protein and development of a common signaling mechanism, Biochemistry 42, 4759-4770.
    • (2003) Biochemistry , vol.42 , pp. 4759-4770
    • Cusanovich, M.A.1    Meyer, T.E.2
  • 6
    • 0032990441 scopus 로고    scopus 로고
    • PAS domains: Internal sensors of oxygen, redox potential, and light
    • Taylor, B. L., and Zhulin, I. B. (1999) PAS domains: Internal sensors of oxygen, redox potential, and light, Microbiol. Mol. Biol. Rev. 63, 479-506.
    • (1999) Microbiol. Mol. Biol. Rev. , vol.63 , pp. 479-506
    • Taylor, B.L.1    Zhulin, I.B.2
  • 8
    • 0032567106 scopus 로고    scopus 로고
    • Crystal structure and functional analysis of the HERG potassium channel N-terminus: A eukaryotic PAS domain
    • Cabral, J. H. M., Lee, A., Cohen, S. L., Chait, B. T., Li, M., and Mackinnon, R. (1998) Crystal structure and functional analysis of the HERG potassium channel N-terminus: A eukaryotic PAS domain, Cell 95, 649-655.
    • (1998) Cell , vol.95 , pp. 649-655
    • Cabral, J.H.M.1    Lee, A.2    Cohen, S.L.3    Chait, B.T.4    Li, M.5    Mackinnon, R.6
  • 9
    • 3242747592 scopus 로고    scopus 로고
    • Photoactive yellow protein, bacteriophytochrome, and sensory rhodopsin in purple phototrophic bacteria
    • Kyndt, J. A., Meyer, T. E., and Cusanovich, M. A. (2004) Photoactive yellow protein, bacteriophytochrome, and sensory rhodopsin in purple phototrophic bacteria, Photochem. Photobiol. Sci. 3, 519-530.
    • (2004) Photochem. Photobiol. Sci. , vol.3 , pp. 519-530
    • Kyndt, J.A.1    Meyer, T.E.2    Cusanovich, M.A.3
  • 10
    • 0025268907 scopus 로고
    • Soluble cytochromes and a photoactive yellow protein isolated from the moderately halophilic purple phototrophic bacterium, Rhodospirillum salexigens
    • Meyer, T. E., Fitch, J. C., Bartsch, R. G., Tollin, G., and Cusanovich, M. A. (1990) Soluble cytochromes and a photoactive yellow protein isolated from the moderately halophilic purple phototrophic bacterium, Rhodospirillum salexigens, Biochim. Biophys. Acta 1016, 364-370.
    • (1990) Biochim. Biophys. Acta , vol.1016 , pp. 364-370
    • Meyer, T.E.1    Fitch, J.C.2    Bartsch, R.G.3    Tollin, G.4    Cusanovich, M.A.5
  • 11
    • 0029892214 scopus 로고    scopus 로고
    • Sequence evidence for strong conservation of the photoactive yellow proteins from the halophilic phototrophic bacteria Chromatium salexigens and Rhodospirillum salexigens
    • Koh, M., Van Driessche, G., Samyn, B., Hoff, W. D., Meyer, T. E., Cusanovich, M. A., and Van Beeumen, J. J. (1996) Sequence evidence for strong conservation of the photoactive yellow proteins from the halophilic phototrophic bacteria Chromatium salexigens and Rhodospirillum salexigens, Biochemistry 35, 2526-2534.
    • (1996) Biochemistry , vol.35 , pp. 2526-2534
    • Koh, M.1    Van Driessche, G.2    Samyn, B.3    Hoff, W.D.4    Meyer, T.E.5    Cusanovich, M.A.6    Van Beeumen, J.J.7
  • 12
    • 0031808072 scopus 로고    scopus 로고
    • New photocycle intermediates in the photoactive yellow protein from Ectothiorhodospira halophila: Picosecond transient absorption spectroscopy
    • Ujj, L., Devanathan, S., Meyer, T. E., Cusanovich, M. A., Tollin, G., and Atkinson, G. H. (1998) New photocycle intermediates in the photoactive yellow protein from Ectothiorhodospira halophila: Picosecond transient absorption spectroscopy, Biophys. J. 75, 406-412.
    • (1998) Biophys. J. , vol.75 , pp. 406-412
    • Ujj, L.1    Devanathan, S.2    Meyer, T.E.3    Cusanovich, M.A.4    Tollin, G.5    Atkinson, G.H.6
  • 13
    • 0032809454 scopus 로고    scopus 로고
    • Femtosecond spectroscopic observations of initial intermediates in the photocycle of the photoactive yellow protein from Ectothiorhodospira halophila
    • Devanathan, S., Pacheco, A., Ujj, L., Cusanovich, M. A., Tollin, G., Lin, S., and Woodbury, N. (1999) Femtosecond spectroscopic observations of initial intermediates in the photocycle of the photoactive yellow protein from Ectothiorhodospira halophila, Biophys. J. 77, 1017-1023.
    • (1999) Biophys. J. , vol.77 , pp. 1017-1023
    • Devanathan, S.1    Pacheco, A.2    Ujj, L.3    Cusanovich, M.A.4    Tollin, G.5    Lin, S.6    Woodbury, N.7
  • 14
    • 0037031251 scopus 로고    scopus 로고
    • Kinetics of proton uptake and dye binding by photoactive yellow protein in WT and in the E46Q and E46A mutants
    • Borucki, B., Devanathan, S., Otto, H., Cusanovich, M. A., Tollin, G., and Heyn, M. P. (2002) Kinetics of proton uptake and dye binding by photoactive yellow protein in WT and in the E46Q and E46A mutants, Biochemistry 41, 10026-10037.
    • (2002) Biochemistry , vol.41 , pp. 10026-10037
    • Borucki, B.1    Devanathan, S.2    Otto, H.3    Cusanovich, M.A.4    Tollin, G.5    Heyn, M.P.6
  • 16
    • 0035852878 scopus 로고    scopus 로고
    • Formation of a new buried charge drives a large-amplitude protein quake in photoreceptor activation
    • Xie, A., Kelemen, L., Hendriks, J., White, B. J., Hellingwerf, K. J., and Hoff, W. D. (2001) Formation of a new buried charge drives a large-amplitude protein quake in photoreceptor activation, Biochemistry 40, 1510-1517.
    • (2001) Biochemistry , vol.40 , pp. 1510-1517
    • Xie, A.1    Kelemen, L.2    Hendriks, J.3    White, B.J.4    Hellingwerf, K.J.5    Hoff, W.D.6
  • 18
    • 0034554695 scopus 로고    scopus 로고
    • Isolation, reconstitution and functional characterization of the Rhodobacter sphaeroides photoactive yellow protein
    • Haker, A., Hendriks, J., Gensch, T., Hellingwerf, K., and Crielaard, W. (2000) Isolation, reconstitution and functional characterization of the Rhodobacter sphaeroides photoactive yellow protein, FEBS Lett. 486, 52-56.
    • (2000) FEBS Lett. , vol.486 , pp. 52-56
    • Haker, A.1    Hendriks, J.2    Gensch, T.3    Hellingwerf, K.4    Crielaard, W.5
  • 19
    • 1242285488 scopus 로고    scopus 로고
    • Rhodobacter capsulatus photoactive yellow protein: Genetic context, spectral and kinetics characterization, and mutagenesis
    • Kyndt, J. A., Hurley, J. K., Devreese, B., Meyer, T. E., Cusanovich, M. A., Tollin, G., and Van Beeumen, J. J. (2004) Rhodobacter capsulatus photoactive yellow protein: Genetic context, spectral and kinetics characterization, and mutagenesis, Biochemistry 43, 1808-1820.
    • (2004) Biochemistry , vol.43 , pp. 1808-1820
    • Kyndt, J.A.1    Hurley, J.K.2    Devreese, B.3    Meyer, T.E.4    Cusanovich, M.A.5    Tollin, G.6    Van Beeumen, J.J.7
  • 20
    • 0022600946 scopus 로고
    • Chromatium tepidum sp. nov., a thermophilic photosynthetic bacterium of the family Chromatiaceae
    • Madigan, M. T. (1986) Chromatium tepidum sp. nov., a thermophilic photosynthetic bacterium of the family Chromatiaceae, Int. J. Syst. Bacteriol. 36, 222-227.
    • (1986) Int. J. Syst. Bacteriol. , vol.36 , pp. 222-227
    • Madigan, M.T.1
  • 21
    • 0037417745 scopus 로고    scopus 로고
    • Heterologous production of Halorhodospira halophila holophotoactive yellow protein through tandem expression of the postulated biosynthetic genes
    • Kyndt, J. A., Vanrobaeys, F., Fitch, J. C., Devreese, B. V., Meyer, T. E., Cusanovich, M. A., and Van Beeumen, J. J. (2003) Heterologous production of Halorhodospira halophila holophotoactive yellow protein through tandem expression of the postulated biosynthetic genes, Biochemistry 42, 965-970.
    • (2003) Biochemistry , vol.42 , pp. 965-970
    • Kyndt, J.A.1    Vanrobaeys, F.2    Fitch, J.C.3    Devreese, B.V.4    Meyer, T.E.5    Cusanovich, M.A.6    Van Beeumen, J.J.7
  • 22
    • 0021096834 scopus 로고
    • Transient kinetics of redox reactions of flavodoxin: Effects of chemical modification of the flavin mononucleotide prosthetic group on the dynamics of intermediate complex formation and electron transfer
    • Simondsen, R. P., and Tollin, G. (1983) Transient kinetics of redox reactions of flavodoxin: Effects of chemical modification of the flavin mononucleotide prosthetic group on the dynamics of intermediate complex formation and electron transfer, Biochemistry 22, 3008-3016.
    • (1983) Biochemistry , vol.22 , pp. 3008-3016
    • Simondsen, R.P.1    Tollin, G.2
  • 23
    • 0029110488 scopus 로고
    • 1.4 Å structure of photoactive yellow protein, a cytosolic photoreceptor. Unusual fold, active site, and chromophore
    • Borgstahl, G. E. O., Williams, D. R., and Getzoff, E. D. (1995) 1.4 Å structure of photoactive yellow protein, a cytosolic photoreceptor. Unusual fold, active site, and chromophore, Biochemistry 34, 6278-6287.
    • (1995) Biochemistry , vol.34 , pp. 6278-6287
    • Borgstahl, G.E.O.1    Williams, D.R.2    Getzoff, E.D.3
  • 24
    • 0033550065 scopus 로고    scopus 로고
    • Dual photoactive species in Glu46Asp and Glu46Ala mutants of photoactive yellow protein: A pH driven color transition
    • Devanathan, S., Brudler, R., Hessling, B., Woo, T. T., Gerwert, K., Getzoff, E. D., Cusanovich, M. A., and Tollin, G. (1999) Dual photoactive species in Glu46Asp and Glu46Ala mutants of photoactive yellow protein: A pH driven color transition, Biochemistry 38, 13766-13772.
    • (1999) Biochemistry , vol.38 , pp. 13766-13772
    • Devanathan, S.1    Brudler, R.2    Hessling, B.3    Woo, T.T.4    Gerwert, K.5    Getzoff, E.D.6    Cusanovich, M.A.7    Tollin, G.8
  • 26
    • 0032857645 scopus 로고    scopus 로고
    • Kinetics of and intermediates in a photocycle branching reaction of the photoactive yellow protein from Ectothiorhodospira halophila
    • Hendriks, J., van Stokkum, I. H. M., Crielaard, W., and Hellingwerf, K. J. (1999) Kinetics of and intermediates in a photocycle branching reaction of the photoactive yellow protein from Ectothiorhodospira halophila, FEBS Lett. 458, 252-256.
    • (1999) FEBS Lett. , vol.458 , pp. 252-256
    • Hendriks, J.1    Van Stokkum, I.H.M.2    Crielaard, W.3    Hellingwerf, K.J.4
  • 28
    • 2942599831 scopus 로고    scopus 로고
    • Short hydrogen bonds in photoactive yellow protein
    • Anderson, S., Crosson, S., and Moffat, K. (2004) Short hydrogen bonds in photoactive yellow protein, Acta Crystallogr. D60, 1008-1016.
    • (2004) Acta Crystallogr. , vol.D60 , pp. 1008-1016
    • Anderson, S.1    Crosson, S.2    Moffat, K.3
  • 29
    • 0029964634 scopus 로고    scopus 로고
    • Evidence for trans-cis isomerization of the p-coumaric acid chromophore as the photochemical basis of the photocycle of photoactive yellow protein
    • Kort, R., Vonk, H., Xu, X., Hoff, W. D., Crielaard, W., and Hellingwerf, K. J. (1996) Evidence for trans-cis isomerization of the p-coumaric acid chromophore as the photochemical basis of the photocycle of photoactive yellow protein, FEBS Lett. 382, 73-78.
    • (1996) FEBS Lett. , vol.382 , pp. 73-78
    • Kort, R.1    Vonk, H.2    Xu, X.3    Hoff, W.D.4    Crielaard, W.5    Hellingwerf, K.J.6
  • 30
    • 0032544202 scopus 로고    scopus 로고
    • New insights into the photocycle of Ectothiorhodospira halophila photoactive yellow protein: Photorecovery of the long-lived photobleached intermediate in the MetlOOAla mutant
    • Devanathan, S., Genick, U. K., Canestrelli, I. L., Meyer, T. E., Cusanovich, M. A., Getzoff, E. D., and Tollin, G. (1998) New insights into the photocycle of Ectothiorhodospira halophila photoactive yellow protein: Photorecovery of the long-lived photobleached intermediate in the MetlOOAla mutant, Biochemistry 37, 11563-11568.
    • (1998) Biochemistry , vol.37 , pp. 11563-11568
    • Devanathan, S.1    Genick, U.K.2    Canestrelli, I.L.3    Meyer, T.E.4    Cusanovich, M.A.5    Getzoff, E.D.6    Tollin, G.7
  • 31
    • 0037452676 scopus 로고    scopus 로고
    • Crystal structure of a photoactive yellow protein from a sensor histidine kinase: Conformational variability and signal transduction
    • Rajagopal, S., and Moffat, K. (2003) Crystal structure of a photoactive yellow protein from a sensor histidine kinase: Conformational variability and signal transduction, Proc. Natl. Acad. Sci. U.S.A. 100, 1649-1654.
    • (2003) Proc. Natl. Acad. Sci. U.S.A. , vol.100 , pp. 1649-1654
    • Rajagopal, S.1    Moffat, K.2
  • 33
    • 0034911722 scopus 로고    scopus 로고
    • Amino acids in the N-terminal region regulate the photocycle of photoactive yellow protein
    • Harigai, M., Yasuda, S., Imamoto, Y., Yoshihara, K., Tokunaga, F., and Kataoka, M. (2001) Amino acids in the N-terminal region regulate the photocycle of photoactive yellow protein, J. Biochem. 130, 51-56.
    • (2001) J. Biochem. , vol.130 , pp. 51-56
    • Harigai, M.1    Yasuda, S.2    Imamoto, Y.3    Yoshihara, K.4    Tokunaga, F.5    Kataoka, M.6
  • 34
    • 0037465835 scopus 로고    scopus 로고
    • Site specific mutations provide new insights into the origin of pH effects and alternative spectral forms in the photoactive yellow protein from Ectothiorhodospira halophila
    • Meyer, T. E., Devanathan, S., Woo, T., Getzoff, E. D., Tollin, G., and Cusanovich, M. A. (2003) Site specific mutations provide new insights into the origin of pH effects and alternative spectral forms in the photoactive yellow protein from Ectothiorhodospira halophila, Biochemistry 42, 3319-3325.
    • (2003) Biochemistry , vol.42 , pp. 3319-3325
    • Meyer, T.E.1    Devanathan, S.2    Woo, T.3    Getzoff, E.D.4    Tollin, G.5    Cusanovich, M.A.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.