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Volumn 41, Issue 4, 1998, Pages 566-572

Application of fiber-FISH in physical mapping of Arabidopsis thaliana

Author keywords

DNA fibers; Fluorescence in situ hybridization; Genome analysis; Physical mapping

Indexed keywords

BACTERIAL ARTIFICIAL CHROMOSOME; BACTERIUM ISOLATION; CLONE; CYTOGENETICS; DNA FIBER; DNA MARKER; FLUORESCENCE IN SITU HYBRIDIZATION; GENE LOCUS; GENE MAPPING; GENETIC ANALYSIS; PLANT GENETICS; PLANT GENOME; REPETITIVE DNA;

EID: 15444355385     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/g98-093     Document Type: Article
Times cited : (145)

References (43)
  • 1
    • 0027959197 scopus 로고
    • High resolution fluorescence in situ hybridization to linearly extended DNA visually maps a tandem repeat associated with facioscapulohumeral muscular dystrophy immediately adjacent to the telomere of 4q
    • Bengtsson, U., Altherr, M.R., Wasmuth, J.J., and Winokur, S.T. 1994. High resolution fluorescence in situ hybridization to linearly extended DNA visually maps a tandem repeat associated with facioscapulohumeral muscular dystrophy immediately adjacent to the telomere of 4q. Hum. Mol. Genet. 3: 1801-1805.
    • (1994) Hum. Mol. Genet. , vol.3 , pp. 1801-1805
    • Bengtsson, U.1    Altherr, M.R.2    Wasmuth, J.J.3    Winokur, S.T.4
  • 2
    • 0030860421 scopus 로고    scopus 로고
    • Multiple repetitive DNA sequences in the paracentric regions of Arabidopsis thaliana L
    • Brandes, A., Thompson, H., Dean, C., and Heslop-Harrison, J.S. 1997. Multiple repetitive DNA sequences in the paracentric regions of Arabidopsis thaliana L. Chromosome Res. 5: 238-246.
    • (1997) Chromosome Res. , vol.5 , pp. 238-246
    • Brandes, A.1    Thompson, H.2    Dean, C.3    Heslop-Harrison, J.S.4
  • 3
    • 51249165756 scopus 로고
    • Construction and characterization of bacterial artificial chromosome library of Arabidopsis thaliana
    • Choi, S., Creelman, R.A., Mullet, J.E., and Wing, R.A. 1995. Construction and characterization of bacterial artificial chromosome library of Arabidopsis thaliana. Plant Mol. Biol. Rep. 13: 124-128.
    • (1995) Plant Mol. Biol. Rep. , vol.13 , pp. 124-128
    • Choi, S.1    Creelman, R.A.2    Mullet, J.E.3    Wing, R.A.4
  • 4
    • 0030087850 scopus 로고    scopus 로고
    • RFLP and physical mapping with an rDNA-specific endonuclease reveals that nucleolus organizer regions of Arabidopsis thaliana adjoin the telomeres on chromosomes 2 and 4
    • Copenhaver, G.P., and Pikaard, C.S. 1996a. RFLP and physical mapping with an rDNA-specific endonuclease reveals that nucleolus organizer regions of Arabidopsis thaliana adjoin the telomeres on chromosomes 2 and 4. Plant J. 9: 259-272.
    • (1996) Plant J. , vol.9 , pp. 259-272
    • Copenhaver, G.P.1    Pikaard, C.S.2
  • 5
    • 0030087851 scopus 로고    scopus 로고
    • Two-dimensional RFLP analyses reveal megabase-sized clusters of rRNA gene variants in Arabidopsis thaliana, suggesting local spreading of variants as the mode for gene homogenization during concerted evolution
    • Copenhaver, G.P., and Pikaard, C.S. 1996b. Two-dimensional RFLP analyses reveal megabase-sized clusters of rRNA gene variants in Arabidopsis thaliana, suggesting local spreading of variants as the mode for gene homogenization during concerted evolution. Plant J. 9: 273-282.
    • (1996) Plant J. , vol.9 , pp. 273-282
    • Copenhaver, G.P.1    Pikaard, C.S.2
  • 7
    • 0030111335 scopus 로고    scopus 로고
    • High-resolution physical mapping in Arabidopsis thaliana and tomato by fluorescence in situ hybridization to extended DNA fibres
    • Fransz, P.F., Alonso-Blanco, C., Liharska, T.B., Peeters, A.J.M., Zabel, P., and de Jong, J.H. 1996. High-resolution physical mapping in Arabidopsis thaliana and tomato by fluorescence in situ hybridization to extended DNA fibres. Plant J. 9: 421-430.
    • (1996) Plant J. , vol.9 , pp. 421-430
    • Fransz, P.F.1    Alonso-Blanco, C.2    Liharska, T.B.3    Peeters, A.J.M.4    Zabel, P.5    De Jong, J.H.6
  • 8
    • 0018614061 scopus 로고
    • Cloning and characterization of ribosomal RNA genes from wheat and barley
    • Gerlach, W.L., and Bedbrook, J.R. 1979. Cloning and characterization of ribosomal RNA genes from wheat and barley. Nucleic Acids Res. 7: 1869-1885.
    • (1979) Nucleic Acids Res. , vol.7 , pp. 1869-1885
    • Gerlach, W.L.1    Bedbrook, J.R.2
  • 10
    • 0028205148 scopus 로고
    • High resolution ordering of YAC contigs using extended chromatin and chromosomes
    • Haaf, T., and Ward, D.C. 1994. High resolution ordering of YAC contigs using extended chromatin and chromosomes. Hum. Mol. Genet. 3: 629-633.
    • (1994) Hum. Mol. Genet. , vol.3 , pp. 629-633
    • Haaf, T.1    Ward, D.C.2
  • 11
    • 0030053842 scopus 로고    scopus 로고
    • Mapping of the nucleolus organizer on chromosome 4 in Arabidopsis thaliana
    • Haberer, G., Fischer, T.C., and Torres-Ruiz, R.A. 1996. Mapping of the nucleolus organizer on chromosome 4 in Arabidopsis thaliana. Mol. Gen. Genet. 250: 123-128.
    • (1996) Mol. Gen. Genet. , vol.250 , pp. 123-128
    • Haberer, G.1    Fischer, T.C.2    Torres-Ruiz, R.A.3
  • 12
    • 0028036668 scopus 로고
    • High resolution mapping using fluorescence in situ hybridization to extended DNA fibers prepared from agarose-embedded cells
    • Heiskanen, M., Karhu, R., Hellsten, E., Peltonen, L., Kallioniemi, O.P., and Palotie, A. 1994. High resolution mapping using fluorescence in situ hybridization to extended DNA fibers prepared from agarose-embedded cells. BioTechniques, 17: 928-933.
    • (1994) BioTechniques , vol.17 , pp. 928-933
    • Heiskanen, M.1    Karhu, R.2    Hellsten, E.3    Peltonen, L.4    Kallioniemi, O.P.5    Palotie, A.6
  • 13
    • 0028803889 scopus 로고
    • Head to tail organization of the human COL6A1 and COL6A2 genes by fibre-FISH
    • Heiskanen, M., Saitta, B., Palotie, A., and Chu, M. 1995a. Head to tail organization of the human COL6A1 and COL6A2 genes by fibre-FISH. Genomics, 29: 801-803.
    • (1995) Genomics , vol.29 , pp. 801-803
    • Heiskanen, M.1    Saitta, B.2    Palotie, A.3    Chu, M.4
  • 16
    • 0026667606 scopus 로고
    • High-resolution mapping of mammalian genes by in situ hybridization to free chromatin
    • Heng, H.H.Q., Squire, J., and Tsui, L.-C. 1992. High-resolution mapping of mammalian genes by in situ hybridization to free chromatin. Proc. Natl. Acad. Sci. U.S.A. 89: 9509-9513.
    • (1992) Proc. Natl. Acad. Sci. U.S.A. , vol.89 , pp. 9509-9513
    • Heng, H.H.Q.1    Squire, J.2    Tsui, L.-C.3
  • 17
    • 0028203528 scopus 로고
    • High resolution mapping of overlapping cosmids by fluorescence in situ hybridization
    • Houseal, T.W., Dackowski, W.R., Landes, G.M., and Klinger, K.W. 1994. High resolution mapping of overlapping cosmids by fluorescence in situ hybridization. Cytometry, 15: 193-198.
    • (1994) Cytometry , vol.15 , pp. 193-198
    • Houseal, T.W.1    Dackowski, W.R.2    Landes, G.M.3    Klinger, K.W.4
  • 18
    • 0029955962 scopus 로고    scopus 로고
    • Interphase fluorescence in situ mapping: A physical mapping strategy for plant species with large complex genomes
    • Jiang, J., Hulbert, S.H., Gill, B.S., and Ward, D.C. 1996. Interphase fluorescence in situ mapping: a physical mapping strategy for plant species with large complex genomes. Mol. Gen. Genet. 252: 497-502.
    • (1996) Mol. Gen. Genet. , vol.252 , pp. 497-502
    • Jiang, J.1    Hulbert, S.H.2    Gill, B.S.3    Ward, D.C.4
  • 19
    • 0029859048 scopus 로고    scopus 로고
    • Utilization of FISH in positional cloning: An example on 13q22
    • Laan, M., Isosomppi, J., Klockars, T., Peltonen, L., and Palotie, A. 1996. Utilization of FISH in positional cloning: an example on 13q22. Genome Res. 6: 1002-1012.
    • (1996) Genome Res. , vol.6 , pp. 1002-1012
    • Laan, M.1    Isosomppi, J.2    Klockars, T.3    Peltonen, L.4    Palotie, A.5
  • 20
    • 0028234897 scopus 로고
    • Rapid preparation of megabase plant DNA from nuclei in agarose plugs and microbeads
    • Liu, Y., and Whittier, R.F. 1994. Rapid preparation of megabase plant DNA from nuclei in agarose plugs and microbeads. Nucleic Acids Res. 22: 2168-2169.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 2168-2169
    • Liu, Y.1    Whittier, R.F.2
  • 21
    • 0000444790 scopus 로고
    • Localization of tandemly repeated DNA sequences in Arabidopsis thaliana
    • Maluszynska, J., and Heslop-Harrison, J.S. 1991. Localization of tandemly repeated DNA sequences in Arabidopsis thaliana. Plant J. 1: 159-166.
    • (1991) Plant J. , vol.1 , pp. 159-166
    • Maluszynska, J.1    Heslop-Harrison, J.S.2
  • 23
    • 0027956080 scopus 로고
    • Centromeric repetitive sequences in Arabidopsis thaliana
    • Murata, M., Ogura, Y., and Motoyoshi, F. 1994. Centromeric repetitive sequences in Arabidopsis thaliana. Jpn. J. Genet. 69: 361-370.
    • (1994) Jpn. J. Genet. , vol.69 , pp. 361-370
    • Murata, M.1    Ogura, Y.2    Motoyoshi, F.3
  • 24
    • 0031193961 scopus 로고    scopus 로고
    • Physical mapping of the 5S ribosomal RNA genes in Arabidopsis thaliana by multi-color fluorescence in situ hybridization
    • Murata, M., Heslop-Harrison, J.S., and Motoyoshi, F. 1997. Physical mapping of the 5S ribosomal RNA genes in Arabidopsis thaliana by multi-color fluorescence in situ hybridization. Plant J. 12: 31-37.
    • (1997) Plant J. , vol.12 , pp. 31-37
    • Murata, M.1    Heslop-Harrison, J.S.2    Motoyoshi, F.3
  • 25
    • 0029896645 scopus 로고    scopus 로고
    • Tandem arrangement of the human serum albumin multigene family in the sub-centromeric region of 4q: Evolution and chromosomal direction of transcription
    • Nishio, H., Heiskanen, M., Palotie, A., Belanger, L., and Cugaiczyk. 1996. Tandem arrangement of the human serum albumin multigene family in the sub-centromeric region of 4q: evolution and chromosomal direction of transcription. J. Mol. Biol. 259: 113-119.
    • (1996) J. Mol. Biol. , vol.259 , pp. 113-119
    • Nishio, H.1    Heiskanen, M.2    Palotie, A.3    Belanger, L.4    Cugaiczyk5
  • 26
    • 0029874298 scopus 로고    scopus 로고
    • High-resolution fluorescence in situ hybridization: A new approach in genome mapping
    • Palotie, A., Heiskanen, M., Lann, M., and Horelli-Kuitunen, N. 1996. High-resolution fluorescence in situ hybridization: a new approach in genome mapping. Ann. Med. 28: 101-106.
    • (1996) Ann. Med. , vol.28 , pp. 101-106
    • Palotie, A.1    Heiskanen, M.2    Lann, M.3    Horelli-Kuitunen, N.4
  • 27
    • 0027179475 scopus 로고
    • High resolution visual mapping of stretched DNA by fluorescent hybridization
    • Parra, I., and Windle, B. 1993. High resolution visual mapping of stretched DNA by fluorescent hybridization. Nature Genet. 5: 17-21.
    • (1993) Nature Genet. , vol.5 , pp. 17-21
    • Parra, I.1    Windle, B.2
  • 28
    • 0023053043 scopus 로고
    • Characterization of the genome of Arabidopsis thaliana
    • Pruitt, R.E., and Meyerowitz, E.M. 1986. Characterization of the genome of Arabidopsis thaliana. J. Mol. Biol. 187: 169-183.
    • (1986) J. Mol. Biol. , vol.187 , pp. 169-183
    • Pruitt, R.E.1    Meyerowitz, E.M.2
  • 29
    • 0024281368 scopus 로고
    • Isolation of a higher eukaryotic telomere from Arabidopsis thaliana
    • Richards, E.J., and Ausubel, F.M. 1988. Isolation of a higher eukaryotic telomere from Arabidopsis thaliana. Cell, 53: 127-136.
    • (1988) Cell , vol.53 , pp. 127-136
    • Richards, E.J.1    Ausubel, F.M.2
  • 30
    • 0031263162 scopus 로고    scopus 로고
    • Arabidopsis thaliana centromere regions: Genetic map positions and repetitive DNA structure
    • Round, E.K., Flowers, S.K., and Richards, E.J. 1997. Arabidopsis thaliana centromere regions: genetic map positions and repetitive DNA structure. Genome Res. 7: 1045-1053.
    • (1997) Genome Res. , vol.7 , pp. 1045-1053
    • Round, E.K.1    Flowers, S.K.2    Richards, E.J.3
  • 31
  • 32
    • 0345169384 scopus 로고    scopus 로고
    • 5W 1H for rice whole genome sequencing
    • Sasaki, T. 1997. 5W 1H for rice whole genome sequencing. Rice Genome. 6: 1.
    • (1997) Rice Genome. , vol.6 , pp. 1
    • Sasaki, T.1
  • 33
    • 0028841539 scopus 로고
    • Physical map and organization of Arabidopsis thaliana chromosome 4
    • Washington, D.C.
    • Schmidt, R., West, J., Love, K., Lenehan, Z., Lister, C., Thompson, H., Bouchez, D., and Dean, C. 1995. Physical map and organization of Arabidopsis thaliana chromosome 4. Science (Washington, D.C.), 270: 480-483.
    • (1995) Science , vol.270 , pp. 480-483
    • Schmidt, R.1    West, J.2    Love, K.3    Lenehan, Z.4    Lister, C.5    Thompson, H.6    Bouchez, D.7    Dean, C.8
  • 35
    • 0030966155 scopus 로고    scopus 로고
    • Analysis of ribosomal and alpha repetitive DNA by fiber-FISH
    • Shiels, C., Coutelle, C., and Huxley, C. 1997. Analysis of ribosomal and alpha repetitive DNA by fiber-FISH. Cytogenet. Cell Genet. 76: 20-22.
    • (1997) Cytogenet. Cell Genet. , vol.76 , pp. 20-22
    • Shiels, C.1    Coutelle, C.2    Huxley, C.3
  • 36
    • 0030743865 scopus 로고    scopus 로고
    • Application of three different methods to analyze fibre-FISH results obtained using four lambda clones from the porcine region MHC III
    • Sjöberg, A., Peelman, L.J., and Chowdhary, B.P. 1997. Application of three different methods to analyze fibre-FISH results obtained using four lambda clones from the porcine region MHC III. Chromosome Res. 5: 247-253.
    • (1997) Chromosome Res. , vol.5 , pp. 247-253
    • Sjöberg, A.1    Peelman, L.J.2    Chowdhary, B.P.3
  • 37
    • 0029857949 scopus 로고    scopus 로고
    • A novel repetitive sequence associated with the centromeric regions of Arabidopsis thaliana chromosomes
    • Thompson, H., Schmidt, R., Brandes, A., Heslop-Harrison, J.S., and Dean, C. 1996. A novel repetitive sequence associated with the centromeric regions of Arabidopsis thaliana chromosomes. Mol. Gen. Genet. 253: 247-252.
    • (1996) Mol. Gen. Genet. , vol.253 , pp. 247-252
    • Thompson, H.1    Schmidt, R.2    Brandes, A.3    Heslop-Harrison, J.S.4    Dean, C.5
  • 38
    • 0031589014 scopus 로고    scopus 로고
    • Yeast artificial chromosome clones of rice chromosome 2 ordered using DNA markers
    • Umehara, Y., Kurata, N., Ashikara, I., and Sasaki, T. 1997. Yeast artificial chromosome clones of rice chromosome 2 ordered using DNA markers. DNA Res. 4: 127-131.
    • (1997) DNA Res. , vol.4 , pp. 127-131
    • Umehara, Y.1    Kurata, N.2    Ashikara, I.3    Sasaki, T.4
  • 39
    • 0026737923 scopus 로고
    • Estimating genomic distance from DNA sequence location in cell nuclei by a random walk model
    • Washington, D.C.
    • Van Den Engh, G., Sachs, R., and Trask, B.J. 1992. Estimating genomic distance from DNA sequence location in cell nuclei by a random walk model. Science (Washington, D.C.), 257: 1410-1412.
    • (1992) Science , vol.257 , pp. 1410-1412
    • Van Den Engh, G.1    Sachs, R.2    Trask, B.J.3
  • 43


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.