Multiple repetitive DNA sequences in the paracentromeric regions of Arabidopsis thaliana L.

Chromosome Research

Volumn 5, Issue 4, 1997, Pages 238-246

  Brandes, A ^a   Thompson, H ^a   Dean, C ^a   Heslop Harrison, J S ^a  

^a JOHN INNES CENTRE   (United Kingdom)

Author keywords

Centromere; Fibre DNA; Genome organization; In situ hybridization; Microsatellite

Indexed keywords

MICROSATELLITE DNA; PLANT DNA; REPETITIVE DNA;

ARABIDOPSIS; ARTICLE; CENTROMERE; CHROMOSOME STRUCTURE; COSMID; DNA SEQUENCE; HETEROCHROMATIN; IN SITU HYBRIDIZATION; INTERPHASE; METAPHASE; NONHUMAN; PRIORITY JOURNAL;

ARABIDOPSIS; CENTROMERE; CHROMOSOMES, ARTIFICIAL, YEAST; DNA, PLANT; GENE DOSAGE; GENOME, PLANT; HETEROCHROMATIN; IN SITU HYBRIDIZATION, FLUORESCENCE; INTERPHASE; METAPHASE; MICROSATELLITE REPEATS; REPETITIVE SEQUENCES, NUCLEIC ACID;

ARABIDOPSIS THALIANA;

EID: 0030860421     PISSN: 09673849     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1018415502795     Document Type: Article

References (51)

1. Ambros P, Schweizer D (1976) The Giemsa C-banded karyotype of Arabidopsis thaliana. Arabidopsis Info Service 13: 167-171.
2. Baum M, Ngan VK, Clarke L (1994) The centromeric K-type repeat and the central core are together sufficient to establish a functional Schizosaccharomyces pombe centromere. Mol Biol Cell 5: 747-761.
3. Bauwens S, Van Oostveldt P, Engler G, Van Montagu M (1991) Distribution of the rDNA and three classes of highly repetitive DNA in the chromatin of interphase nuclei of Arabidopsis thaliana. Chromosoma 101: 41-48.
4. Bedbrook JR, Jones J, O'Neil M, Thompson RD, Flavell RB (1980) Molecular characterization of telomeric heterochromatin in Secale species. Cell 19: 545-560.
5. Bell CJ, Ecker JR (1994) Assignment of 30 microsatellite loci to the linkage map of Arabidopsis. Genomics 19: 137-144.
6. Brandes A, Heslop-Harrison JS, Kamm A, Kubis S, Doudrick RL, Schmidt T (1997) Comparative analysis of the chromosomal and genomic organization of Ty1-copia-like retrotransposons in pteridophytes, gymnosperms and angiosperms. Plant Mol Biol 33:11-21.
7. Campell BR, Song Y, Posch TE, Cullis CA, Town CD (1992) Sequence and organization of 5S ribosomal RNA-encoding genes of Arabidopsis thaliana. Gene 112: 225-228.
8. Depeiges A, Goubely C, Lenoir A et al. (1995) Identification of the most represented repeated motifs in Arabidopsis thaliana microsatellite loci. Theor Appl Genet 91: 160-168.
9. Flavell RB (1986) Repetitive DNA and chromosome evolution in plants. Phil Trans R Soc Lond B 312: 227-242.
10. Fransz PF, Alonso-Blanco C, Liharska TB, Peeters AJM, Zabel P, De Jong JH (1996) High resolution physical mapping in Arabidopsis thaliana and tomato by fluorescence in situ hybridization to extended DNA fibres. Plant J 9: 421-430.
11. Fuchs J, Pich U, Meister A, Schubert I (1994) Differentiation of field bean heterochromatin by in situ hybridization with a repeated FokI sequence. Chrom Res 2: 25-28.
12. Galasso I, Schmidt T, Pignone D, Heslop-Harrison JS (1995) The molecular cytogenetics of Vigna unguiculata (L.) Walp: the physical organization and characterization of 18s-5.8s-25s rRNA genes, 5s rRNA genes, telomere-like sequences, and a family of centromeric repetitive DNA sequences. Theor Appl Genet 91: 928-935.
13. Ganal M, Hemleben V (1988) Insertion and amplification of a DNA sequence in satellite DNA of Cucumis sativus L. (cucumber). Theor Appl Genet 75: 357-361.
14. Ganal M, Lapitan NLV, Tanksley S (1988) A molecular and cytogenetic survey of major repeated DNA sequences in tomato. Mol Gen Genet 213: 262-268.
15. Gerdes MG, Carter KC, Moen Jr PT, Lawrence JB (1994) Dynamic changes in the higher-level chromatin organization of specific sequences revealed by in situ hybridization to nuclear halos. J Cell Biol 126: 289-304.
16. Gerlach WL, Bedbrook JR (1979) Cloning and characterization of ribosomal RNA genes from wheat and rye. Nucleic Acids Res 7: 1869-1885.
17. Haaf T, Ward DC (1994) Structural analysis of α-satellite DNA and centromere proteins using extended chromatin and chromosomes. Hum Mol Genet 3: 697-709.
18. Haaf T, Warburton PE, Willard HF (1992) Integration of human α-satellite DNA into simian chromosomes: centromere protein binding and disruption of normal chromosome segregation. Cell 70: 681-696.
19. Harrison GE, Heslop-Harrison JS (1995) Centromeric repetitive DNA sequences in the genus Brassica. Theor Appl Genet 90: 157-165.
20. Heslop-Harrison JS (1996) Electron microscopy in plant chromosomes. In: Fukui K, Nakayama S, eds. Plant Chromosomes: Laboratory Methods. Baton Rouge: CRC Press, pp. 225-245.
21. Hirochika H, Fukuchi A, Kikuchi F (1992) Retrotransposon families in rice. Mol Gen Genet 233: 209-216.
22. Houseal TM, Klinger KW (1994) Commentary: What's in a spot? Hum Mol Genet 3: 1215-1216.
23. Kamm A, Schmidt T, Heslop-Harrison JS (1994) Molecular and physical organization of highly repetitive, undermethylated DNA from Pennisetum glaucum. Mol Gen Genet 244: 420-425.
24. Konieczny A, Voytas DF, Cummings MP, Ausubel FM (1991) A superfamily of Arabidopsis thaliana retrotransposons. Genetics 127: 303-308.
25. Maluszynska J, Heslop-Harrison JS (1991) Localization of tandemly repeated DNA sequences in Arabidopsis thaliana. Plant J 1: 159-166.
26. Maluszynska J, Heslop-Harrison JS (1993) Molecular cytogenetics of the genus Arabidopsis: in situ localization of rDNA sites, chromosome numbers and diversity in centromeric heterochromatin. Ann Bot 71: 479-484.
27. Martinez-Zapater JM, Estelle MA, Somerville CR (1986) A highly repeated DNA sequence in Arabidopsis thaliana. Mol Gen Genet 204: 417-423.
28. Meyerowitz EM (1994) Structure and organization of the Arabidopsis thaliana nuclear genome. In: Meyerowitz EM, Somerville CR, eds. Arabidopsis. New York: Cold Spring Harbor Laboratory Press, pp. 21-36.
29. Murata M, Ogura Y, Motoyoshi F (1994) Centromeric repetitive sequences in Arabidopsis thaliana. Jpn J Genet 69: 361-370.
30. Murata M, Heslop-Harrison JS, Motoyoshi F (1997) Physical mapping of the 5S ribosomal RNA genes in Arabidopsis thaliana by multicolour fluorescence in situ hybridization with cosmid clones. Plant J (in press).
31. Murphy TD, Karpen GH (1995) Localization of centromere function in a Drosophila minichromosome. Cell 82: 599-609.
32. Parra I, Windle B (1993) High resolution visual mapping of stretched DNA by fluorescent hybridization. Nature Genet 5: 17-21
33. Pedersen C, Linde-Laursen I (1994) Chromosomal locations of four minor rDNA loci and a marker microsatellite sequence in barley. Chrom Res 2: 65-71.
34. Pélissier T, Tutois S, Deragon JM, Tourmente S, Genestier S, Picard G (1995) Athila, a new retroelement from Arabidopsis thaliana. Plant Mol Biol 29: 441-452.
35. Pélissier T, Tutois S, Tourmente S, Deragon JM, Picard G (1996) DNA regions flanking the major Arabidopsis thaliana satellite are principally enriched in Athila retroelement sequences. Genetica 97: 141-151.
36. Pruitt RE, Meyerowitz EM (1986) Characterization of the genome of Arabidopsis thaliana. J Mol Biol 187: 169-183.
37. Richards EJ, Ausubel FM (1988) Isolation of a higher eukaryotic telomere from Arabidopsis thaliana. Cell 53: 127-136.
38. Richards EJ, Goodman HM, Ausubel FM (1991) The centromere region of Arabidopsis thaliana chromosome 1 contains telomere similar sequences. Nucleic Acids Res 19: 3351-3357.
39. Schmidt T, Heslop-Harrison JS (1996a) The physical and genomic organization of microsatellites in sugar beet. Proc Natl Acad Sci USA 93: 8761-8765.
40. Schmidt T, Heslop-Harrison JS (1996b) High-resolution mapping of repetitive DNA by in situ hybridization: molecular and chromosomal features of prominent dispersed and discretely localized DNA families from the wild beet species Beta procumbens. Plant Mol Biol 30: 1099-1114.
41. Schmidt T, Schwarzacher T, Heslop-Harrison JS (1994) Physical mapping of rRNA genes by fluorescent in situ hybridization and structural analysis of 5S rRNA genes and intergenic spacer sequences in sugar beet (Beta vulgaris). Theor Appl Genet 88: 629-636.
42. Schmidt R, West J, Love K et al. (1995) Physical map and organization of Arabidopsis thaliana chromosome 4. Science 270: 480-483.
43. Simoens CR, Gielen J, Van Montagu M, Inzé D (1988) Characterization of highly repetitive sequences of Arabidopsis thaliana. Nucleic Acids Res 16: 6753-6766.
44. Thompson H, Schmidt R, Brandes A, Heslop-Harrison JS, Dean C (1996a) A novel repetitive sequence associated with the centromeric regions of Arabidopsis thaliana. Mol Gen Genet 253: 247-252.
45. Thompson H, Schmidt R, Dean C (1996b) Identification and distribution of seven classes of middle-repetitive DNA in the Arabidopsis thaliana genome. Nucleic Acids Res 24: 3017-3022.
46. Thompson H, Schmidt R, Dean C (1996c) Analysis of the occurrence and nature of repeated DNA in a 850 kb region of Arabidopsis thaliana chromosome 4. Plant Mol Biol 32: 553-557.
47. Tourmente S, Deragon JM, Lafleuriel J et al. (1994) Characterization of minisatellites in Arabidopsis thaliana with sequence similarity to the human minisatellite core sequence. Nucleic Acids Res 22: 3317-3321.
48. Voytas DF, Ausubel FM (1988) A copia-like transposable element family in Arabidopsis thaliana. Nature 336: 242-244.
49. Willard HF, Waye JS (1987) Chromosome-specific subsets of human alpha satellite DNA: analysis of sequence divergence within and between chromosomal subsets and evidence for an ancestral pentameric repeat. J Mol Evol 25: 207-214.
50. Wright DA, Ke N, Smalle J, Hauge BM, Goodman HM, Voytas DF (1996) Multiple non-LTR retrotransposons in the genome of Arabidopsis thaliana. Genetics 142: 569-578.
51. Zachgo EA, Wang ML, Dewdney J et al. (1996) A physical map of chromosome 2 of Arabidopsis thaliana. Genome Res 6: 19-25.