Interphase fluorescence in situ hybridization mapping: A physical mapping strategy for plant species with large complex genomes

Molecular and General Genetics

Volumn 252, Issue 5, 1996, Pages 497-502

  Jiang, Jiming ^a   Hulbert, Scot H ^b   Gill, Bikram S ^b   Ward, David C ^c  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b KANSAS STATE UNIVERSITY   (United States)

^c YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Fluorescence in situ hybridization (FISH); Interphase mapping; Maize; Physical mapping

Indexed keywords

ARTICLE; DNA PROBE; FLUORESCENCE IN SITU HYBRIDIZATION; GENE MAPPING; INTERPHASE; MAIZE; METAPHASE; METHODOLOGY; NONHUMAN; PLANT; PRIORITY JOURNAL;

MAMMALIA; ZEA MAYS;

EID: 0029955962     PISSN: 00268925     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF02172395     Document Type: Article

References (29)

1. Brandriff BF, Gordon LA, Tynan KT, Olsen AS, Mohrenweiser HW, Fertitta A, Carrano AV, Trask BJ (1992) Order and genomic distances among members of the carcinoembryonic antigen (CEA) gene family determined by fluorescence in situ hybridization. Genomics 12:773-779
2. Civardi L, Xia Y, Edwards KJ, Schnable PS, Nikolau BJ (1994) The relationship between genetic and physical distances in the cloned al-sh2 interval of the Zea mays L. genome. Proc Natl Acad Sci USA 91:8268-8272
3. Florijn RJ, Bonden LAJ, Vrolijk H, Wiegant J, Vaandrager JW, Baas F, den Dunnen JT, Tanke HJ, van Ommen GJB, Raap AK (1995) High-resolution DNA fiber-FISH for genomic DNA mapping and color bar-coding of large genes. Hum Mol Genet 4:831-836
4. Fransz PF, Alonso-Blanco C, Liharska TB, Peeters AJM, Zabel P, de Jong JH (1996) High-resolution physical mapping in Arabidopsis thaliana and tomato by fluorescence in situ hybridization to extended DNA libers. Plant J 9:421-430
5. Ganal MW, Young ND, Tanksley SD (1989) Pulsed field gel electrophoresis and physical mapping of large DNA fragments in the Tm-2a region of chromosome 9 in tomato. Mol Gen Genet 215:395-400
6. Gill KS, Gill BS, Endo TR (1993) A chromosome region-specific mapping strategy reveals gene-rich telomeric ends in wheat. Chromosoma 102:374-381
7. Haaf T, Ward DC (1994) High resolution ordering of YAC contigs using extended chromatin and chromosomes. Hum Mol Genet 3:629-633
8. Hong KS, Richter TE, Bennetzen JL, Hulbert SH (1993) Complex duplications in maize lines. Mol Gen Genet 239:115-121
9. Houseal TW, Dackowski WR, Landes GM, Klinger KW (1994) High resolution mapping of overlapping cosmids by fluorescence in situ hybridization. Cytometry 15:193-198
10. Hulbert SH, Bennetzen JL (1991) Recombination at the Rpl locus of maize. Mol Gen Genet 226:377-382
11. Jiang J, Gill BS (1994) Nonisotopic in situ hybridization and plant genome mapping: the first 10 years. Genome 37:717-725
12. Jiang J, Gill BS, Wang GL, Ronald PC, Ward DC (1995) Metaphase and interphase FISH mapping of the rice genome using bacterial artificial chromosomes. Proc Natl Acad Sci USA 92: 4487-4491
13. Lawrence JB, Singer RH, McNeil JA (1990) Interphase and metaphase resolution of different distance within the human dystrophin gene. Science 249:928-932
14. Lichter P, Tang CC, Call K, Hermanson G, Evans GA, Housman D, Ward DC (1990) High-resolution mapping of human chromosome 11 by in situ hybridization with cosmid clones. Science 247: 64-69
15. Parra I, Windle B (1993) High resolution visual mapping of stretched DNA by fluorescent hybridization. Nature Genet 5:17-21
16. Richter TE, Pryor TJ, Bennetzen JL, Hulbert SH (1995) New rust resistance specificities associated with recombination in the Rpl complex in maize. Genetics 141:373-381
17. Schwarz-Sommer Z, Shepherd N, Tacke E, Gierl A, Rohde W, Leclercq L, Mattes M, Berndtgen R, Peterson PA, Saedler H (1987) Influence of transposable elements on the structure and function of the A1 gene of Zea mays. EMBO J 6:287-294
18. 2 Fusarium oxysporum resistance locus in tomato. Mol Gen Genet 231:179-185
19. Senger G, Ragoussis J, Trowsdale J, Sheer D (1993) Fine mapping of the human MHC class II region within chromosome band 6p21 and evaluation of probe ordering using interphase fluorescence in situ hybridization. Cytogenet Cell Genet 64:49-53
20. Senger G, Jones TA, Fidlerová H, Sanséau P, Trowsdale J, Duff M, Sheer D (1994) Released chromatin: linearized DNA for high resolution fluorescence in situ hybridization. Hum Mol Genet 3:1275-1280
21. Shaw JR, Hannah LC (1992) Genomic nucleotide sequences of a wild-type shrunken-2 allele of Zea mays. Plant Physiol 98: 1214-1216
22. Staskawicz BJ, Ausubel FM, Baker BJ, Ellis JG, Jones JDG (1995) Molecular genetics of plant disease resistance. Science 268: 661-667
23. Sudupak MA, Bennetzen JL, Hulbert SH (1993) Unequal exchange and meiotic instability of disease-resistance genes in the Rpl region of maize. Genetics 133:119-125
24. Trask BJ (1991) Mapping of human chromosome Xq28 by two-color fluorescence in situ hybridization of DNA sequences to interphase cell nuclei. Am J Hum Genet 48:1-15
25. Trask BJ, Pinkel D, van den Engh G (1989) The proximity of DNA sequences in interphase cell nuclei is correlated to genomic distance and permits ordering of cosmids spanning 250 kilobase pairs. Genomics 5:710-717
26. Umehara Y, Inagaki A, Tanoue H, Yasukochi T, Nagamura Y, Saji S, Otsuki Y, Fujimura T, Kurata N, Minobe Y (1994) Construction and characterization of a rice YAC library for physical mapping. Mol Breed 1:79-89
27. van den Engh G, Sachs R, Trask BJ (1992) Estimating genomic distance from DNA sequence location in cell nuclei by a random walk model. Science 257:1410-1412
28. Werner JE, Endo TR, Gill BS (1992) Toward a cytogenetically based physical map of the wheat genome. Proc Natl Acad Sci USA 89:11307-11311
29. Wu KS, Tanksley SD (1993) Genetic and physical mapping of telomeres and microsatellites of rice. Plant Mol Biol 22:861-872