Stable and Noncompetitive RNA Internal Control for Routine Clinical Diagnostic Reverse Transcription-PCR

Journal of Clinical Microbiology

Volumn 42, Issue 3, 2004, Pages 1003-1011

  Dingle, Kate E ^a,b,c   Crook, Derrick ^a,b   Jeffery, Katie ^b  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b JOHN RADCLIFFE HOSPITAL   (United Kingdom)

^c UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

AMPLICON; ARTICLE; CONTROLLED STUDY; DIAGNOSTIC TEST; DIAGNOSTIC VALUE; GENE AMPLIFICATION; HEPATITIS DELTA VIRUS; INFLUENZA VIRUS A; INFLUENZA VIRUS B; METAPNEUMOVIRUS; NONHUMAN; NUCLEIC ACID AMPLIFICATION; PARAINFLUENZA VIRUS 1; PARAINFLUENZA VIRUS 2; PARAINFLUENZA VIRUS 3; PARAINFLUENZA VIRUS 4; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; RESPIRATORY SYNCYTIAL PNEUMOVIRUS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA EXTRACTION; RNA ISOLATION; RNA STABILITY; VIRUS DETECTION;

BASE SEQUENCE; DIAGNOSTIC TESTS, ROUTINE; DNA PRIMERS; HUMANS; REPRODUCIBILITY OF RESULTS; RESTRICTION MAPPING; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; VIRUS DISEASES; VIRUSES;

HEPATITIS DELTA VIRUS; HUMAN METAPNEUMOVIRUS; HUMAN PARAINFLUENZA VIRUS 1; HUMAN PARAINFLUENZA VIRUS 2; HUMAN PARAINFLUENZA VIRUS 3; HUMAN PARAINFLUENZA VIRUS 4; INFLUENZA VIRUS; INFLUENZAVIRUS A; INFLUENZAVIRUS B; METAPNEUMOVIRUS; PNEUMOVIRUS; RESPIRATORY SYNCYTIAL VIRUS; RNA VIRUSES;

EID: 1542618436     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.42.3.1003-1011.2004     Document Type: Article

References (29)

1. Abdulmawjood, A., S. Roth, and M. Bülte. 2002. Two methods for construction of internal amplification controls for the detection of Escherichia coli 0157 by polymerase chain reaction. Mol. Cell. Probes 16:335-339.
2. Aguilar, J. C., M. P. Pérez-Breña, M. L. Garcia, N. Cruz, D. D. Erdman, and J. E. Echevarria. 2000. Detection and identification of human parainfluenza viruses 1, 2, 3 and 4 in clinical samples of pediatric patients by multiplex reverse-transcription PCR. J. Clin. Microbiol. 38:1191-1195.
3. Chen, P. J., G. Kalpana, W. Goldberg, W. Mason, B. Werner, J. Gerin, and J. Taylor. 1986. The structure and replication of the HDV genome. Proc. Natl. Acad. Sci. USA 83:8774-8778.
4. Cubero, J., J. van der Wolf, J. van Beckhoven, and M. M. López. 2002. An internal control for the diagnosis of crown gall by PCR. J. Microbiol. Methods 51:387-392.
5. Dingle, K. E., V. Bichko, H. Zuccola, J. Hogel, and J. Taylor. 1998. Initiation of hepatitis delta virus genome replication. J. Virol. 72:4783-4788.
6. Drosten, C., E. Seifried, and W. K. Roth. 2001. Taqman 5′-nuclease human immunodeficiency virus type 1 PCR assay with phage-packaged competitive internal control for high-throughput blood donor screening. J. Clin. Microbiol. 39:4302-4308.
7. DuBois, D. B., C. R. Walkerpeach, M. W. Winkler, and B. L. Pasloske. 1999. Standards for PCR assays, p. 197-209. In M. Innis, D. Gelfand, and J. Sninshy (ed.), PCR applications: protocols for functional genomics. Academic Press, Inc., San Diego, Calif.
8. Elena, S. F., J. Dopazo, R. Flores, T. O. Diener, and A. Moya. 1991. Phylogeny of viroids, viroidlike satellite RNAs and the viroidlike domain of hepatitis δ virus RNA. Proc. Natl. Acad. Sci. USA 88:5631-5634.
9. Gilbert, L. L., A. Dakhama, B. M. Bone, E. E. Thomas, and R. G. Hegele. 1996. Diagnosis of viral respiratory tract infections in children by using a reverse transcription-PCR panel. J. Clin. Microbiol. 34:140-143.
10. Hayase, Y., and K. Tobita. 1997. Probable post-influenza cerebellitis. Intern. Med. 36:747-749.
11. Jeffery, K. J., S. J. Read, T. E. Peto, R. T. Mayon-White, and C. R. Bangham. 1997. Diagnosis of viral infections of the central nervous system: clinical interpretation of PCR results. Lancet 349:313-317.
12. Kehl, S. C., K. J. Henrickson, W. Hua, and J. Fan. 2001. Evaluation of the hexaplex assay for detection of respiratory viruses in children. J. Clin. Microbiol. 39:1696-1701.
13. Kleiboeker, S. B. 2003. Applications of competitive RNA in diagnostic RT-PCR. J. Clin. Microbiol. 41:2055-2061.
14. Kos, A., A. Dijkema, A. C. Arnberg, P. H. van der Meide, and H. Schellekens. 1986. The HDV possesses a circular RNA. Nature 323:558-560.
15. Kuo, M. Y., J. Goldberg, L. Coates, W. Mason, J. Gerin, and J. Taylor. 1988. Molecular cloning of hepatitis delta virus RNA from an infected woodchuck liver: sequence, structure and applications. J. Virol. 62:1855-1861.
16. Kuo, M. Y., M. Chao, and J. Taylor. 1989. Initiation of replication of the human hepatitis delta virus genome from cloned cDNA: role of the delta antigen. J. Virol. 63:1945-1950.
17. Kurtz, J., R. J. Manvell, and J. Banks. 1996. Avian influenza virus isolated from a woman with conjunctivitis. Lancet 348:901-902.
18. Malorny, B., J. Hoortar, C. Bunge, and R. Helmuth. 2003. Multicenter validation of the analytical accuracy of Salmonella PCR: toward an international standard. Appl. Environ. Microbiol. 69:290-296.
19. Munch, M., L. P. Nielsen, K. J. Handberg, and P. H. Jorgensen. 2001. Detection and subtyping (H5 and H7) of avian type A influenza virus by reverse transcription-PCR and PCR-ELISA. Arch. Virol. 146:87-97.
20. Neisters, H. G. M. 2002. Clinical virology in real time. J. Clin. Virol. 25:S3-S12.
21. Pasloske, B. L., C. R. Walkerpeach, R. D. Obermoeller, M. Winkler, and D. B. DuBois. 1998. Armored RNA technology for production of ribonuclease-resistant RNA controls and standards. J. Clin. Microbiol. 36:3590-3594.
22. Peret, T. C. T., G. Boivin, Y. Li, M. Couillard, C. Humphrey, D. M. E. Osterhaus, D. D. Erdman, and L. J. Anderson. 2002. Characterisation of human metapneumoviruses isolated from patients in North America. J. Infect. Dis. 185:1660-1663.
23. Sachadyn, P., and J. Kur. 1998. The construction and use of a PCR internal control. Mol. Cell. Probes 12:259-262.
24. Selvey, S., E. W. Thompson, K. Matthaei, R. A. Lea, M. G. Irving, and L. R. Griffiths. 2001. β-Actin - an unsuitable internal control for RT-PCR. Mol. Cell. Probes 15:307-311.
25. Stockton, J., J. S. Ellis, M. Saville, J. P. Clewley, and M. C. Zambon. 1998. Multiplex PCR for typing and subtyping influenza and respiratory syncytial viruses. J. Clin. Microbiol. 36:2990-2995.
26. van der Zee, A., C. Agterberg, M. Peeters, J. Schellekens, and F. R. Mooi. 1993. Polymerase chain reaction assay for pertussis: simultaneous detection and discrimination for Bordetella pertussis and Bordetella parapertussis. J. Clin. Microbiol. 31:2134-2140.
27. van Doornum, G. J. J., J. Guldemeester, A. D. M. E. Osterhaus, and H. G. M. Neisters. 2003. Diagnosing herpesvirus infections by real-time amplification and rapid culture. J. Clin. Microbiol. 41:576-580.
28. van Elden, L. J. R., M. Nijhuis, P. Schipper, R. Schuurman, and A. M. van Loon. 2001. Simultaneous detection of influenza viruses A and B using real-time quantitative PCR. J. Clin. Microbiol. 39:196-200.
29. Wang, K.-S., Q.-L. Choo, H. J. Weiner, R. C. Ou, R. C. Najarian, G. T. Thayer, K. J. Mullenbach, K. J. Denniston, J. L. Gerin, and M. Houghton. 1986. Structure, sequence and expression of the HDV genome. Nature 323:508-513.