Mechanism for Radical Cation Transport in Duplex DNA Oligonucleotides

Journal of the American Chemical Society

Volumn 126, Issue 9, 2004, Pages 2877-2884

  Liu, Chu Sheng ^a   Hernandez, Rigoberto ^a   Schuster, Gary B ^a  

^a GEORGIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL BONDS; DNA; OLIGOMERS; OXIDATION; PHONONS; PHOTOCHEMICAL REACTIONS; POSITIVE IONS; RATE CONSTANTS; THERMODYNAMICS; ULTRAVIOLET RADIATION;

OLIGONUCLEOTIDES; RADICAL CATION HOPPING;

FREE RADICALS;

ADENINE; ANTHRAQUINONE DERIVATIVE; CATION; DNA; DOUBLE STRANDED DNA; GUANINE; OLIGOMER; OLIGONUCLEOTIDE; PIPERIDINE; THYMIDINE;

ABSORPTION; ARTICLE; CHEMICAL ANALYSIS; CHEMICAL REACTION; COVALENT BOND; ION TRANSPORT; KINETICS; LIGHT; OXIDATION; PHONON; ULTRAVIOLET RADIATION;

CATIONS; DNA; FREE RADICALS; KINETICS; MODELS, CHEMICAL; OLIGONUCLEOTIDES; THERMODYNAMICS;

EID: 1542377678     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja0378254     Document Type: Article

References (61)

1. Ames, B.; Lee, F. D.; Durston, W. E. Proc. Natl. Acad. Sci. U.S.A. 1973, 70, 782-786.
2. Poulsen, H. E.; Prieme, H.; Loft, S. Eur. J. Cancer Prev. 1998, 7, 9-16.
3. Friedman, K. A.; Heller, A. J. Phys. Chem. B 2001, 105, 11859-11865.
4. Boiteux, S.; Gellon, L.; Guibourt, N. Free Radical Biol. Med. 2002, 15, 1244-1253.
5. Di Ventra, M.; Zwolak, M. DNA Electronics; Nalwa, H. S., Ed.; American Scientific Publishers: Stevenson Ranch, CA; in press.
6. Robertson, N.; McGowan, C. A. Chem. Soc. Rev 2003, 32, 96-103.
7. Kasumov, A. Y.; Kociak, M.; Gueron, S.; Reulet, B.; Volkov, V. T.; Klinov, D. V.; Bouchiat, H. Science 2001, 291, 280-282.
8. Okahata, Y.; Kobayashi, T.; Tanaka, K.; Shimomura, M. J. Am. Chem. Soc. 1998, 120, 6165-6166.
9. Fink, H. W.; Schonenberger, C. Nature 1999, 398, 407-410.
10. Porath, D.; Bezryadin, A.; de Vries, S.; Dekker, C. Nature 2000, 403, 635-638.
11. Cai, L. T.; Tabata, H.; Kawai, T. Appl. Phys. Lett. 2000, 77, 3105-3106.
12. Yoo, K. H.; Ha, D. H.; Lee, J. O. Phys. Rev. Lett. 2001, 87, 198102.
13. Storm, A. J.; van Noort, J.; de Vries, S.; Dekker, C. Appl. Phys. Lett. 2001, 79, 3881-3883.
14. de Pablo, P. K.; Moreno-Herrero, F.; Colchero, F.; Gómez Herrero, J.; Herrero, P.; Baró, M.; Ordejón, P.; Soler, J. M.; Artacho, E. Phys. Rev. Lett. 2000, 85, 4992-4995.
15. Kasai, H.; Yamaizumi, Z.; Berger, M.; Cadet, J. J. Am. Chem. Soc. 1992, 114, 9692-9694.
16. Saito, I.; Takayama, M.; Kawanishi, S. J. Am. Chem. Soc. 1995, 117, 5590-5591.
17. Gasper, S. M.; Schuster, G. B. J. Am. Chem. Soc. 1997, 119, 12762-12771.
18. Kelley, S. O.; Barton, J. K. Met. Ions Biol. Syst. 1999, 36, 211-249.
19. Wan, C. Z.; Fiebig, T.; Schiemann, O.; Barton, J. K.; Zewail, A. H. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 14052-14055.
20. Jortner, J.; Bixon, M.; Langenbacher, T.; Michel-Beyerle, M. E. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 12759-12765.
21. Schuster, G. B. Acc. Chem. Res. 2000, 33, 253-260.
22. Giese, B. Annu. Rev. Biochem. 2002, 71, 51-70.
23. Ly, D.; Kan, Y.; Armitage, B.; Schuster, G. B. J. Am. Chem. Soc. 1996, 118, 8747-8748.
24. Steenken, S.; Jovanovic, S. V. J. Am. Chem. Soc. 1997, 119, 617-618.
25. Giese, B.; Amaudrut, J.; Kohler, A.; Sporman, M.; Wessely, S. Nature 2001, 412, 318-320.
26. Sartor, V.; Boone, E.; Schuster, G. B. J. Phys. Chem. B 2001, 105, 11057-11059.
27. Bixon, M.; Jortner, J. J. Am. Chem. Soc. 2001, 123, 12556-12567.
28. Jortner, J.; Bixon, M.; Voityuk, A. A.; Rosch, N. J. Phys. Chem. A 2002, 106, 7599-7606.
29. Berlin, Y. A.; Burin, A. L.; Ratner, M. A. Chem. Phys. 2002, 275, 61-74.
30. Lewis, F. D.; Liu, J.; Zuo, X.; Hayes, R. T.; Wasielewski, M. R. J. Am. Chem. Soc. 2003, 125, 4850-4861.
31. Kawai, K.; Takada, T.; Tojo, S.; Ichinose, N. M. T. J. Am. Chem. Soc. 2001, 123, 12688-12689.
32. Shafirovich, V.; Dourandin, A.; Huang, W. D.; Luneva, N. P.; Geacintov, N. E. J. Phys. Chem. B 1999, 103, 10924-10933.
33. Bixon, M.; Giese, B.; Wessely, S.; Langenbacher, T.; Michel-Beyerle, M. E.; Jortner, J. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 11713-11716.
34. Zhang, H.-Y.; Li, X.-Q.; Han, P.; Yu, X.; Yan, Y.-L. J. Chem. Phys. 2002, 117.
35. Private communication with F. D. Lewis.
36. Beveridge, D. L.; McConnel, K. J. Curr. Opin. Struct. Biol. 2000, 10, 182-196.
37. Voityuk, A. A.; Siriwong, K.; Rosch, N. Phys. Chem. Chem. Phys. 2001, 3, 5421-5425.
38. Troisi, A.; Giorgio Orlandi, G. J. Phys. Chem. B 2002, 106, 2093-2101.
39. Grozema, F. C.; Siebbeles, L. D. A.; Berlin, Y. A.; Ratner, M. A. ChemPhysChem 2002, 3, 536-539.
40. Henderson, P. T.; Jones, D.; Hampikian, G.; Kan, Y.; Schuster, G. B. Proc. Natl. Acad. Sci., U.S.A. 1999, 96, 8353-8358.
41. Barnett, R. N.; Cleveland, C. L.; Joy, A.; Landman, U.; Schuster, G. B. Science 2001, 294, 567-571.
42. Liu, C.-S.; Schuster, G. B. J. Am. Chem. Soc. 2003, 125, 6098-6102.
43. Steenken, S. Chem. Rev. 1989, 89, 503-520.
44. Bixon, M.; Jortner, J. J. Phys. Chem. B 2000, 104, 3906-3913.
45. Barnett, R. N.; Cleveland, C. L.; Landman, U.; Boone, E.; Kanvah, S.; Schuster, G. B. J. Phys. Chem. B 2003, 107, 3525-3537.
46. Giese, B.; Biland, A. Chem. Commun. 2002, 667-672.
47. Kino, K.; Saito, I.; Sugiyama, H. J. Am. Chem. Soc. 1998, 120, 7373-7374.
48. Nunez, M.; Hall, D. B.; Barton, J. K. Chem. Biol. 1999, 6, 85-97.
49. Giese, B. Acc. Chem. Res. 2000, 33, 631-636.
50. Liu, C.-S.; Schuster, G. B. To be published.
51. Navas Diaz, A. J. Photochem. Photobiol., A 1990, 53, 141-67.
52. Armitage, B. A.; Yu, C.; Devadoss, C.; Schuster, G. B. J. Am. Chem. Soc. 1994, 116, 9847-9859.
53. Giese, B. Curr. Opin. Struct. Biol. 2002, 6, 612-618.
54. trap.
55. Giese, B.; Spichtly, M. ChemPhysChem 2000, 1, 195-198.
56. Murphy, C. J.; Arkin, M. R.; Jenkins, Y.; Ghatlia, N. D.; Bossman, S. H. ; Turro, N. J.; Barton, J. K. Science 1993, 262, 1025-1029.
57. Siriwong, K.; Voityuk, A. A.; Newton, M. D.; Rosch, N. J. Phys. Chem. B 2003, 107, 2995-2601.
58. Kendrick, T.; Giese, B. Chem. Commun. 2002, 2002, 2016-2017.
59. Rakhamanova, S. V.; Conwell, E. M. J. Phys. Chem. B 2001, 105, 2056-2061.
60. Truhlar, D. G.; Garrett, B. C.; Klippenstein, S. J. J. Phys. Chem. 1996, 100, 12771-12800.
61. Hammond, G. S. J. Am. Chem. Soc. 1955, 77, 334-339.