Rat T-cell receptor TRAV11 (Vα14) genes: Further evidence of extensive multiplicity with homogeneous CDR1 and diversified CDR2 by genomic contig and cDNA analysis

Immunogenetics

Volumn 55, Issue 11, 2004, Pages 756-762

  Kinebuchi, Miyuki ^a   Matsuura, Akihiro ^a  

^a FUJITA HEALTH UNIVERSITY SCHOOL OF MEDICINE   (Japan)

Author keywords

Human TRAV10; Mouse TRAV11; NKT cells; Rat TRAV11 (Valpha 14); T cell receptors

Indexed keywords

T LYMPHOCYTE RECEPTOR;

AMINO ACID SEQUENCE; ANIMAL CELL; ANIMAL TISSUE; ANTIGEN RECOGNITION; ARTICLE; CONTROLLED STUDY; DNA DETERMINATION; GENE; GENETIC CODE; GENOMICS; NATURAL KILLER CELL; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROMOTER REGION; RAT; RNA SPLICING; TRAV11 GENE;

AMINO ACID SEQUENCE; ANIMALS; AUTOANTIGENS; BASE SEQUENCE; EVOLUTION, MOLECULAR; HUMANS; MICE; MULTIGENE FAMILY; NERVE TISSUE PROTEINS; PHYLOGENY; RATS; RECEPTORS, ANTIGEN, T-CELL; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SPLEEN;

ANIMALIA;

EID: 1542359007     PISSN: 00937711     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00251-003-0640-3     Document Type: Article

References (23)

1. Bendelac A, Lantz O, Quimby ME, Tewdell JW, Bennink J, Brutkiewicz RR (1995) CD1 recognition by mouse NK1+ T lymphocytes. Science 268:863-265
2. Bosc N, Lefranc MP (2003) The mouse (Mus musculus) T-cell receptor alpha (TRA) and delta (TRD) variable genes. Dev Comp Immunol 27:465-497
3. Bouwens L, Remels L, Baekeland M, Van Bossuyt H, Wisse E (1987) Large granular lymphocytes or "pit cells" from rat liver: isolation, ultrastructural characterization and natural killer activity. Eur J Immunol 17:37-42
4. Chothia C, Boswell DR, Lesk AM (1988) The outline structure of the T-cell alpha beta receptor. EMBO J 7:3745-3755
5. Chou HS, Behlke MA, Godambe SA, Russell JH, Brooks CG, Loh DY (1986) T-cell receptor genes in an alloreactive CTL clone: implications for rearrangement and germline diversity of variable gene segments. EMBO J 5:2149-2155
6. Clark SP, Arden B, Kabelitz D, Mak TW (1995) Comparison of human and mouse T-cell receptor variable gene segment subfamilies. Immunogenetics 42:531-540
7. Frohman MA, Dush M, Martin GR (1988) Rapid production of full-length cDNAs from rare transcripts: amplification using a single gene-specific oligonucleotide primer. Proc Natl Acad Sci USA 85:8998-9002
8. Gahm SJ, Fowlkes BJ, Jameson SC, Gascoigne NR, Cotterman MM, Kanagawa O, Schwartz RH, Matis LA (1991) Profound alteration in an alpha beta T-cell antigen receptor repertoire due to polymorphism in the first complementarity-determining region of the beta chain. Proc Natl Acad Sci USA 88:10267-10271
9. Hesse JE, Lieber MR, Mizuuchi K, Gellert M (1989) V(D)J recombination: a functional definition of the joining signals. Genes Dev 3:1053-1061
10. Holder M, Lewis PO (2003) Phylogeny estimation: traditional and Bayesian approaches. Nat Rev Genet 4:275-284
11. Jameson SC, Nakajima PB, Brooks JL, Heath W, Kanagawa O, Gascoigne NR (1991) The T-cell receptor V alpha 11 gene family. Analysis of allelic sequence polymorphism and demonstration of J alpha region-dependent recognition by allele-specific antibodies. J Immunol 147:3185-3193
12. Kinebuchi M, Matsuura A, Ogiu T, Kikuchi K (1997) Deviated overexpression of TCR-beta, TCR-gamma, CD4, and CD8 on thymic lymphomas induced by 1-propyl-1-nitrosourea: destruction of the allelic exclusion of TCR-beta and expression of functional TCR-betagamma heterodimer on a lymphoma, cFTL53. J Immunol 159:748-756
13. + T-cell antigen receptor alpha chain expanded in unprimed mice. Proc Natl Acad Sci USA 87:5248-5252
14. + T-cell antigen receptor alpha chain in mice. Proc Natl Acad of Sci USA 88:7518-7522
15. Lefranc M-P, Lefranc G (2001) The T-cell receptor facts book. Academic Press, London
16. Lefranc MP, Pommie C, Ruiz M, Giudicelli V, Foulquier E, Truong L, Thouvenin-Contet V, Lefranc G (2003) IMGT unique numbering for immunoglobulin and T cell receptor variable domains and Ig superfamily V-like domains. Dev Comp Immunol 27:55-77
17. Lewin B (2000) Genes VII. Oxford University Press, Oxford
18. Lipman DJ, Pearson WR (1985) Rapid and sensitive protein similarity searches. Science 227:1435-1441
19. Matsuura A, Kinebuchi M, Chen HZ, Katabami S, Shimizu T, Hashimoto Y, Kikuchi K, Sato N (2000) NKT cells in the rat: organ-specific distribution of NK T cells expressing distinct V alpha 14 chains. J Immunol 164:3140-3148
20. Morris M, Barclay AN, Williams AF (1988) Analysis of T-cell receptor beta chains in rat thymus, and rat C alpha and C beta sequences. Immunogenetics 27:174-179
21. Nei M, Gojobori T (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3:418-426
22. Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463-5467
23. Taniguchi M, Harada M, Kojo S, Nakayama T, Wakao H (2003) The regulatory role of Valpha14 NKT cells in innate and acquired immune response. Annu Rev Immunol 21:483-513