Detection and classification of allexiviruses from garlic in China

Archives of Virology

Volumn 149, Issue 3, 2004, Pages 435-445

  Chen, J ^a   Zheng, H Y ^a   Antoniw, J F ^b   Adams, M J ^b   Chen, J P ^a   Lin, L ^a  

^a INSTITUTE OF PLANT PROTECTION AND MICROBIOLOGY   (China)

^b ROTHAMSTED RESEARCH   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; PRIMER DNA;

ARTICLE; CHINA; CLASSIFICATION; DNA SEQUENCE; GARLIC; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT DISEASE; PLANT VIRUS; RNA VIRUS; VIROLOGY;

CHINA; DNA PRIMERS; DNA, COMPLEMENTARY; GARLIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT DISEASES; PLANT VIRUSES; RNA VIRUSES; SEQUENCE ANALYSIS, DNA;

ALLEXIVIRUS; ALLIUM ASCALONICUM; ALLIUM SATIVUM; CARLAVIRUS; FOVEAVIRUS; GARLIC VIRUS C; GARLIC VIRUS D; GARLIC VIRUS X; POTEXVIRUS; RNA VIRUSES;

EID: 1542290701     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-003-0234-2     Document Type: Article

References (17)

1. Anon (2001) Wisconsin Package version 10.3. Accelrys Inc., San Diego, CA, USA
2. Chen J, Chen JP, Adams MJ (2001) A universal PCR primer to detect members of the Potyviridae and its use to examine the taxonomic status of several members of the family. Arch Virol 146: 757-766
3. Chen J, Chen JP, Adams MJ (2001) Molecular characterisation of a complex mixture of viruses in garlic with mosaic symptoms in China. Arch Virol 146: 1841-1853
4. Chen J, Chen JP, Adams MJ (2002) Characterisation of some carla-and potyviruses from bulb crops in China. Arch Virol 147: 419-428
5. Felsenstein J (1993) PHYLIP (Phylogeny Inference Package) version 3.6. Distributed by the author. Department of Genetics, University of Washington, Seattle
6. Kanyuka KV, Vishnichenko VK, Levay KE, Kondrikov DY, Ryabov EV, Zavriev SK (1992) Nucleotide sequence of shallot virus X RNA reveals a 5′-proximal cistron closely related to those of potexviruses and a unique arrangement of the 3′-proximal cistrons. J Gen Virol 73: 2553-2560
7. Ryabov EV, Generozov EV, Vetten HJ, Zavriev SK (1996) Analysis of the 3′-region of the mite born filamentous virus genome testifies its relation to the shallot virus X group. Mol Biol (Mosk) 30: 103-110
8. Song SL, Song JT, Kim CH, Lee JS, Choi YD (1998) Molecular characterization of the garlic virus X genome. J Gen Virol 79: 155-159
9. Sumi S, Matsumi T, Tsuneyoshi T (1999) Complete nucleotide sequences of garlic viruses A and C, members of the newly ratified genus Allexivirus. Arch Virol 144: 1819-1826
10. Sumi S, Tsuneyoshi T, Furutani H (1993) Novel rod-shaped viruses isolated from garlic, Allium sativum, possessing a unique genome organization. J Gen Virol 74: 1879-1885
11. Takaichi M, Nagakubo T, Oeda K (2001) Mixed virus infections of garlic determined by a multivalent polyclonal antiserum and virus effects on disease symptoms. Plant Dis 85: 71-75
12. Tsuneyoshi T, Matsumi T, Deng TC, Sako I, Sumi S (1998) Differentiation of Allium carlaviruses isolated from different parts of the world based on the viral coat protein sequence. Arch Virol 143: 1093-1107
13. Tsuneyoshi T, Matsumi T, Natsuaka KT, Sumi S (1998) Nucleotide sequence analysis of virus isolates indicates the presence of three potyvirus species in Allium plants. Arch Virol 143: 97-113
14. van Dijk P, van der Vlugt RA (1994) New mite-borne virus isolates from Rakkyo, shallot and wild leek species. Eur J Plant Path 100: 269-277
15. van Regenmortel MHV, Fauquet CM, Bishop DHL, Carstens EB, Estes MK, Lemon SM, Maniloff J, Mayo MA, McGeoch DJ, Pringle CR, Wickner RB (eds) (2000) Virus taxonomy: Seventh Report of the International Committee on Taxonomy of Viruses. Academic Press London, San Diego
16. Vishnichenko VK, Konareva TN, Zavriev SK (1993) A new filamentous virus in shallot. Plant Path 42: 121-126
17. Yamashita K, Sakai J, Hanada K (1996) Characterization of a new virus from garlic (Allium sativum L.), garlic mite-borne virus. Ann Phytopathol Soc Jpn 62: 483-489