Nucleotide sequence analysis of virus isolates indicates the presence of three potyvirus species in Allium plants

Archives of Virology

Volumn 143, Issue 1, 1998, Pages 97-113

  Tsuneyoshi, T ^a   Matsumi, T ^a   Natsuaki, K T ^b   Sumi, S ^a  

^a WAKUNAGA PHARMACEUTICAL CO LTD   (Japan)

^b TOKYO UNIVERSITY OF AGRICULTURE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; PRIMER DNA; VIRUS DNA;

AMINO ACID SEQUENCE; ARTICLE; CLASSIFICATION; COMPARATIVE STUDY; DNA SEQUENCE; GARLIC; GENE AMPLIFICATION; GENETICS; JAPAN; LUTEOVIRUS; MEDICINAL PLANT; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; POTYVIRUS; SEQUENCE HOMOLOGY; VIROLOGY; VIRUS CAPSID; VIRUS GENOME;

ALLIUM; AMINO ACID SEQUENCE; CAPSID; DNA PRIMERS; DNA, COMPLEMENTARY; DNA, VIRAL; GARLIC; GENE AMPLIFICATION; GENOME, VIRAL; JAPAN; LUTEOVIRUS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANTS, MEDICINAL; POLYMERASE CHAIN REACTION; POTYVIRUS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID;

ALLIUM; ALLIUM ASCALONICUM; ALLIUM CEPA; ALLIUM FISTULOSUM; ALLIUM PORRUM; ALLIUM SATIVUM; DNA VIRUSES; LEEK YELLOW STRIPE POTYVIRUS; LUTEOVIRUS; MIRIDAE; ONION YELLOW DWARF VIRUS; POTYVIRUS; SHALLOT YELLOW STRIPE VIRUS; WELSH ONION YELLOW STRIPE VIRUS;

EID: 0031884584     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s007050050271     Document Type: Article

References (35)

1. Allison RF, Dougherty WG, Parks TD, Willis L, Johnston RE, Kelly M, Armstrong FB (1985) Biochemical analysis of the capsid protein gene and capsid protein of tobacco etch virus: N-terminal amino acids are located on the virion's surface. Virology 147: 309-316
2. Atreya CD (1992) Application of genome sequence information in potyvirus taxonomy: An overview. In: Barnett OW (ed) Potyvirus taxonomy. Springer, Wien New York, pp 17-23 (Arch Virol [Suppl] 5)
3. Atreya CD, Raccah B, Pirone TP (1990) A point mutation in the coat protein abolishes aphid transmissibility of a potyvirus. Virology 178: 161-165
4. Atreya PL, Atreya CD, Pirone TP (1991) Amino acid substitutions in the coat protein result in loss of insect transmissibility of a plant virus. Proc Natl Acad Sci USA 88: 7887-7891
5. Barg E, Lesemann D-E, Vettren HJ, Green SK (1994) Identification, partial characterization, and distribution of viruses infecting Allium crops in South and Southeast Asia. Acta Horticult 358: 251-258
6. 3 gene-mediated resistance against the tobamoviruses is elicited by the coat protein. Virology 209: 498-505
7. Brunt AA (1992) The general properties of potyviruses. Arch Virol [Suppl] 5: 3-16
8. Conci V, Nome SF, Milne RG (1992) Filamentous viruses of garlic in Argentina. Plant Dis 76: 594-596
9. Domier LL, Franklin KM, Shahabuddin M, Hellmann GM, Overmeyer JH, Hiremath ST, Siaw MFE, Lomonossoff GP, Shaw JG, Rhoads RE (1986) The nucleotide sequence of tobacco vein mottling virus RNA. Nucleic Acids Res 14: 5417-5430
10. Hilf ME, Dawson WO (1993) The tobamovirus capsid protein functions as a host-specific determinant of long-distance movement. Virology 193: 106-114
11. Jordan R, Hammond J (1991) Comparison and differentiation of potyvirus isolates and identification of strain-, virus-, subgroup-specific and potyvirus group-common epitopes using monoclonal antibodies. J Gen Virol 72: 25-36
12. Knorr DA, Dawson WO (1988) A point mutation in the tobacco mosaic virus capsid protein gene induces hypersensitivity in Nicotiana sylvestris. Proc Natl Acad Sci USA 85: 170-174
13. Kobayashi K, Rabinowicz P, Bravo-Almonacid F, Helguera M, Conci V, Lot H, Mentaberry A (1996) Coat protein gene sequences of garlic and onion isolates of the onion yellow dwarf potyvirus (OYDV). Arch Virol 141: 2277-2287
14. Koch M, Salomon R (1994) Serological detection of onion yellow dwarf virus in garlic. Plant Dis 78: 785-788
15. Lot H, Delecolle B, Boccardo G, Marzachi C, Milne R (1994) Partial characterization of reovirus-like particles associated with garlic dwarf disease. Plant Pathol 43: 537-546
16. Sako I, Nakasone W, Okada K, Ohki S, Osaki T, Inouye T (1991) Yellow streak of rakkyo (Allium chinense G. Don), newly recognized disease caused by garlic latent virus and onion yellow dwarf virus. Ann Phytopathol Soc Jpn 57: 65-69
17. Shukla DD, Frenkel MJ, Ward CW (1991) Structure and function of the potyvirus genome with special reference to the coat protein coding region. Can J Plant Pathol 13: 178-191
18. Shukla DD, Strike PM, Tracy SL, Gough KH, Ward CW (1988) The N and C termini of the coat proteins of potyviruses are surface-located and the N terminus contains the major virus-specific epitopes. J Gen Virol 69: 1 497-1 508
19. Shukla DD, Ward CW (1989) Structure of potyvirus coat proteins and its application in the taxonomy of the potyvirus group. Adv Virus Res 36: 273-314
20. Shukla DD, Ward CW (1989) Identification and classification of potyviruses on the basis of coat protein sequence data and serology. Arch Virol 106: 171-200
21. Shukla DD, Ward CW, Brunt AA (1994) Size and membership of the Potyviridae. In: Shukla DD, Ward CW, Brunt AA (eds) The Potyviridae. CAB International, Wallingford, pp 516
22. Sumi S, Tsuneyoshi T, Furutani H (1993) Novel rod-shaped viruses isolated from garlic, Allium sativum, possessing a unique genome organization. J Gen Virol 74: 1 879-1 885
23. Tsuneyoshi T, Sumi S (1996) Differentiation among garlic viruses in mixed infections based on RT-PCR procedures and direct tissue blotting immunoassay. Phytopathology 86: 253-259
24. Tsuneyoshi T, Ikeda Y, Sumi S (1997) Nucleotide sequences of the 3′ terminal region of onion yellow dwarf virus isolates from Allium plants in Japan. Virus Genes 15: 73-77
25. Van Dijk P (1991) Mite-borne virus isolates from cultivated Allium species and their classification into two new rymoviruses in the family Potyviridae. Neth J Plant Pathol 97: 381-399
26. Van Dijk P (1993) Survey and characterization of potyviruses and their strains of Allium species. Neth J Plant Pathol 99: 1-48
27. Van Dijk P (1993) Carlavirus isolates from cultivated Allium species represent three viruses. Neth J Plant Pathol 99: 233-257
28. Van Dijk P, Sutarya R (1992) Virus survey of garlic, shallot and Welsh onion in Java, Indonesia. Internal Communication of the DLO Centre for Plant Breeding and Reproduction Research, Wageningen, The Netherlands
29. Van Dijk P, Sutarya R (1992) Virus diseases of shallot, garlic and Welsh onion in Java, Indonesia, and prospects for their control. Onion Newsletter Tropics 4: 57-61
30. Walkey DGA (1990) Virus diseases. In: Rabinowitch HD, Brewster JL (eds) Onion and allied crops, vol 2. CRC Press, Boca Raton, pp 191-211
31. Walkey DGA, Antill DN (1989) Agronomic evaluation of virus-free and virus-infected garlic (Allium sativum L.). J Horticult Sci 64: 53-60
32. Walkey DGA, Webb MJW, Bolland CJ, Miller A (1987) Production of virus-free garlic (Allium sativum L.) and shallot (A. ascalonicum L.) by meristem-tip culture. J Horticult Sci 62: 211-220
33. Ward CW, McKern NM, Frenkel MJ, Shukla DD (1992) Sequence data as the major criterion for potyvirus classification. In: Barnett OW (ed) Potyvirus taxonomy. Springer, Wien New York, pp 283-297 (Arch Virol [Suppl] 5)
34. Ward CW, Shukla DD (1991) Taxonomy of potyviruses: Current problems and some solutions. Intervirology 32: 269-296
35. Yamashita K, Hanada K (1996) Purification and cDNA cloning of Welsh onion yellow stripe virus and shallot yellow stripe virus [Abstr.]. Ann Phytopathol Soc Jpn 62: 598 [in Japanese]