Proteomic applications of surface plasmon resonance biosensors: Analysis of protein arrays

Experimental and Molecular Medicine

Volumn 37, Issue 1, 2005, Pages 1-10

  Yuk, Jong Seol ^a   Ha, Kwon Soo ^a  

^a Kangwon National University College of Medicine   (South Korea)

Author keywords

Biosensing techniques; Microscopy, atomic force; Protein array analysis; Proteome; Proteomics; Surface plasmon resonance

Indexed keywords

ALLERGEN; ANTIBODY; ANTIGEN; APTAMER; BIOLOGICAL MARKER; BIOTIN; CALMODULIN; COMPLEMENTARY DNA; DNA; EPITOPE; GOLD; IMMUNOGLOBULIN; INTEGRIN; METAL ION; NICKEL; NUCLEIC ACID; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLINOSITIDE; PHOSPHOLIPID; POLY(DIALLYLDIMETHYLAMMONIUM CHLORIDE); POLYELECTROLYTE; PROTEIN; PROTEIN G; PROTEIN KINASE; PROTEIN P50; PROTEOME; SILASTIC; STREPTAVIDIN; SULFONIC ACID DERIVATIVE; UNINDEXED DRUG;

ADSORPTION; ATOMIC FORCE MICROSCOPY; BIOSENSOR; FLUORESCENCE; HUMAN; MASS SPECTROMETRY; NONHUMAN; PROTEIN EXPRESSION; PROTEIN IMMOBILIZATION; PROTEIN MICROARRAY; PROTEIN PROTEIN INTERACTION; PROTEOMICS; REVIEW; SURFACE ENHANCED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; SURFACE PLASMON RESONANCE; TWO DIMENSIONAL GEL ELECTROPHORESIS;

EID: 15344344813     PISSN: 12263613     EISSN: 20926413     Source Type: Journal    
DOI: 10.1038/emm.2005.1     Document Type: Review

References (46)

1. Adamczyk M, Moore JA, Yu Z. Application of surface plasmon resonance toward studies of low-molecular-weight antigen-antibody binding interactions. Methods 2000;20:319-28
2. Aebersold R, Mann M. Mass spectrometry-based proteomics. Nature 2003;422:198-207
3. Anderson NL, Anderson NG. The human plasma proteome. Mol. Cell. Proteomics 2002;1:845-67
4. Baba A, Kaneko F, Advincula RC. Polyelectrolyte adsorption processes characterized in situ using quartz crystal micro-balance technique: alternate adsorption properties in ultrathin polymer films. Colloids Surf 2000;173:39-49
5. Braun P, Hu Y, Shen B, Halleck A, Koundinya M, Harlow E, LaBaer J. Proteome-scale purification of human proteins from bacteria. Proc Natl Acad Sci USA 2002;99:2654-9
6. Brockman JM, Frutos AG, Corn RM. A multiple chemical modification procedure to create DNA arrays on gold surfaces for the study of protein-DNA interactions with surface plasmon resonance imaging. J Am Chem Soc 1999;121: 8044-51
7. Durr E, Yu J, Krasinska KM, Carver LA, Yates JR, Testa JE, Oh P, Schnitzer JE. Direct proteomic mapping of the lung microvascular endothelial cell surface in vivo and in cell culture. Nature Biotech 2004;22:985-92
8. Gerson D. Probing the proteome. Nature 2003;424:581-7
9. Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, Li Y, Hao YL, Ooi CE, Godwin B, Vitols E, Vijayadamodar G, Pochart P, Machineni H, Welsh M, Kong Y, Zerhusen B, Malcolm R, Varrone Z, Collis A, Minto M, Burgess S, McDaniel L, Stimpson E, Spriggs F, Williams J, Neurath K, Ioime N, Agee M, Voss E, Furtak K, Renzulli R, Aanensen N, Carrolla S, Bickelhaupt E, Lazovatsky Y, DaSilva A, Zhong J, Stanyon CA, Finley RL Jr, White KP, Braverman M, Jarvie T, Gold S, Leach M, Knight J, Shimkets RA, McKenna MP, Chant J, Rothberg JM. A protein interaction map of Drosophila melanogaster. Science 2003;302:1727-36
10. Green RJ, Frazier RA, Shakesheff, KM, Davis MC, Roberts, CJ, Tendler SJB. Surface plasmon resonance analysis of dynamic biological interactions with biomaterials. Biomaterials 2000;21:1823-35
11. Griesser HJ, Kingshott P, McArthur SL, McLean KM, Kinsel GR, Timmons RB. Surface-MALDI mass spectroscopy in biomaterials research. Biomaterials 2004;25:4861-75
12. Hanash S. Disease proteomics. Nature 2003;422:226-32
13. Hiller R, Laffer S, Harwanegg C, Huber M, Schmidt WM, Twardosz A, Barletta B, Becker WM, Blaser K, Breiteneder H, Chapman M, Crameri R, Duchene M, Ferreira F, Fiebig H, Hoffmann-Sommergruber K, King TP, Kleber-Janke T, Kurup VP, Lehrer SB, Lidholm J, Muller U, Pini C, Reese G, Scheiner O, Scheynius A, Shen HD, Spitzauer S, Suck R, Swoboda I, Thomas W, Tinghino R, Van Hage-Hamsten M, Virtanen T, Kraft D, Muller MW, Valenta R. Microarrayed allergen molecules: diagnostic gatekeepers for allergy treatment. FASEB J 2002;16:414-6
14. Homola J, Yee SS, Gauglitz G. Surface plasmon resonance sensors: review. Sens. Acuators B 1999;54:3-15
15. Jongerius-Gortemaker, BGM, Goverde RLJ, van Knapen F, Berwerff AA. Surface plasmon resonance (BIACORE) detection of serum antibodies against Salmonella enteritidis and Salmonella typhimurium. J Immunol Methods 2002;266:33-44
16. Joos TO, Schrenk M, Hopfl P, Kroger K, Chowdhury U, Stoll D, Schorner D, Durr M, Herick K, Rupp S, Sohn K, Hammerle H. A microarray enzyme- linked immunosorbent assay for autoimmune diagnostics. Electrophoresis 2000;21: 2641-50
17. Jung JM, Shin YB, Kim MG, Ro HS, Jung HT, Chung BH. A fusion protein expression analysis using surface plasmon resonance imaging. Anal Biochem 2004;330:251-6
18. Lee W, Oh BK, Min Bae Y, Paek SH, Hong Lee W, Choi JW. Fabrication of self-assembled protein A monolayer and its application as an immunosensor. Biosens Bioelectron 2003;19:185-92
19. Lee Y, Lee EK, Cho YW, Matsui T, Kang IC, Kim TS, Han MH. ProteoChip: a highly sensitive protein microarray prepared by a novel method of protein immobilization for application of protein-protein interaction studies. Proteomics 2003;3:2289-304
20. Liedberg B, Nylander C, Lundstrom I. Surface plasmon resonance for gas detection and biosensing. Sensors and Actuators 1983;4:299-304
21. MacBeath G, Schreiber SL. Printing proteins as microarrays for high-throughput function determination. Science 2000;289: 1760-3
22. McDonnell JM. Surface plasmon resonance: towards an understanding of the mechanism of biological molecular recognition. Curr Opin Chem Biol 2001;5:572-7
23. Myszka DG, Rich RL. Imprementing surface plasmon resonance biosensors in drug discovery. Pharm Sci Tech Today 2000;3:310-7
24. O'Brien MJ, Perez-Luna VH, Brueck SRJ, Lopez GP. A surface plasmon resonance based on spectroscopic imaging. Biosens Bioelecton 2001;16:97-108
25. Oh BK, Kim YK, park KW, Lee WH, Choi JW. Surface plasmon resonance immunosensor for the detection of Salmonella typhimurium. Biosens Bioelectron 2004;19:1497-504
26. Oh BK, Lee W, Chun BS, Bae YM, Lee WH, Choi JW. The fabrication of protein chip based on surface plasmon resonance for detection of pathogens. Biosens Bioelectron 2005;20:1847-50
27. Phizicky E, Bastiaens PI, Zhu H, Snyder M, Fields S. Protein analysis on a proteomic scale. Nature 2003;422:208-15
28. Ramachandran N, Hainsworth E, Bhullar B, Eisenstein S, Rosen B, Lau AY, Walter JC, LaBaer J. Self-assembling protein microarrays. Science 2004;305:86-90
29. Rothenhausler B, Knoll W. Surface-plasmon microscopy. Nature 1998;332:615-7
30. Service RF. Searching for recipes for protein chips. Science 2001;294:2080-2
31. Simpson RJ, Dorow DS. Cancer proteomics: from signaling networks to tumor markers. Trends Biotechnol 2001;19:S40-S48
32. Sota H, Hasegawa Y. Detection of conformational changes in an immobilized protein using surface plasmon resonance. Anal Chem 1998;70:2019-24
33. Stears RL, Martinsky T, Schena M. Trends in microarray analysis. Nature Med 2003;9:140-5
34. Tyers M, Mann M. From genomics to proteomics. Nature 2003;422:193-7
35. Williams C, Addona TA. The integration of SPR biosensors with mass spectrometry: possible applications for proteome analysis. Trends Biotech. 2000;18:45-8
36. Wilson D, Nock S. Functional protein microarrays, Curr Opion Chem Biol 2001;6:81-5
37. Yan W, Lee H, Deutsch EW, Lazaro CA, Tang W, Chen E, Fausto N, Katze MG, Aebersold R. A dataset of human liver proteins identified by protein profiling via isotope coded affinity tag (ICAT) and tandem mass spectrometry. Mol. Cell. Proteomics 2004;3:1039-41
38. Yi SJ, Yuk JS, Jung SH, Zhavnerko GK, Kim YM, Ha KS. Immobilization on charged arrays studied with a surface plamson resonance wavelength-shift sensor. Mol Cells 2003; 15:333-40
39. Yuk J, Jung JW, Jung SH, Han JA, Kim YM, Ha KS. Sensitivity of ex situ and in situ spectral surface plasmon resonance sensors in the analysis of protein arrays. Biosens. Bioelectron. in press 2005
40. Yuk JS, Yi SJ, Lee HG, Kim YM, Ha KS. Characterization of surface plasmon resonance wavelength by changes of protein concentration on protein chips. Sens. Actuators B 2003;94:161-4
41. Yuk JS, Jung JW, Jung SH, Hong D, Han JA, Kim YM, Ha KS. Analysis of protein interactions on protein arrays by a wavelength interrogation-based surface plasmon resonance biosensor. Proteomics 2004a;4:3468-76
42. Yuk JS, Yi SJ, Han JA, Kim YM, Ha KS. SPR intensity in ex situ analysis of protein arrays by a wavelength interrogation-based SPR sensor. Jap J Apply Phys 2004b;43: 2756-60
43. Zhavnerko G, Ha KS. Biosensor applications: surface engineering. In: Encyclopedia of Nanoscience and Nanotechnology. (Schwarz JA, Contescu C, Putyera K, eds), Marcel Dekker 2004;351-60
44. Zhu H, Bilgin M, Bangham R, Hall D, Casamayor A, Bertone P, Lan N, Jansen R, Bidlingmaier S, Houfek T, Mitchell T, Miller P, Dean RA, Gerstein M, Snyder M. Global analysis of protein activities using proteome chips. Science 2001;293: 2101-5
45. Zhu H, Klemic JF, Chang S, Bertone P, Casamayor A, Klemic KG, Smith D, Gerstein M, Reed MA, Snyder M. Analysis of yeast protein kinases using protein chips. Nature Genet 2000;26:283-9
46. Zhu H, Snyder M. Protein chip technology. Curr Opin Chem Biol 2003;7:55-63