Mapping of quantitative trait loci controlling adaptive traits in coastal Douglas-fir. IV. Cold-hardiness QTL verification and candidate gene mapping

Molecular Breeding

Volumn 15, Issue 2, 2005, Pages 145-156

  Wheeler, Nicholas C ^a   Jermstad, Kathleen D ^b   Krutovsky, Konstantin ^b   Aitken, Sally N ^c   Howe, Glenn T ^d   Krakowski, Jodie ^c   Neale, David B ^b,e  

^a Molecular Tree Breeding Services   (United States)

^b PACIFIC SOUTHWEST RESEARCH STATION   (United States)

^c UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^d OREGON STATE UNIVERSITY   (United States)

^e UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Association Genetics; Candidate Gene; Cold hardiness; Douglas fir; MAS; QTL; Verification

Indexed keywords

FORESTRY; GENES; HISTOLOGY; MAPPING; TISSUE;

ASSOCIATION GENETIC; CANDIDATE GENES; COASTAL DOUGLAS-FIR; COLD HARDINESS; DOUGLAS FIR; GENE MAPPING; GENETIC ARCHITECTURE; LOCI ANALYSIS; MARKER-AIDED-SELECTION; QUANTITATIVE TRAIT LOCUS;

NEEDLES;

ABIES; PSEUDOTSUGA MENZIESII;

EID: 15044360468     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11032-004-3978-9     Document Type: Article

References (52)

1. S.N. Aitken W.T. Adams 1995 Screening for cold-hardiness in coastal Douglas-fir B.M. Potts N.M.G. Borralho J.B. Reid R.N. Cromer W.N. Tibbits C.A. Raymond Eucalypt Plantations: Improving Fibre Yield and Quality. Proc. CRC/IUFRO Conference19-24 Feb. 1994, HobartAustralia. CRC for Temperate Hardwood Forestry Hobart, Australia 321 324
2. S.N. Aitken W.T. Adams 1996 Genetics of fall and winter cold-hardiness of coastal Douglas-fir in Oregon Can. J. Forest Res. 26 1828 1837
3. S.N. Aitken W.T. Adams 1997 Spring cold hardiness under strong genetic control in Oregon populations of Pseudotsuga menziesii var. menziesii Can. J. Forest Res. 27 1773 1780
4. S.N. Aitken M. Hannerz 2000 Genecology and gene resource management strategies for conifer cold hardiness F.J. Bigras S.J. Columbo Conifer Cold Hardiness Kluwer Academic Publishers Dordrecht, The Netherlands 23 53
5. T.S. Anekonda W.T. Adams S.N. Aitken 1998 Influence of second flushing on genetics assessment of cold hardiness in coastal Douglas-fir (Pseudotsuga menziesii var. menziesii (Mirb.) Franco) Forest Ecol. Manage. 111 119 126
6. T.S. Anekonda W.T. Adams S.N. Aitken 2000a Cold-hardiness testing for Douglas-fir tree improvement programs: guidelines for a simplerobust and inexpensive method West. J. Appl. Forest 15 129 136
7. T.S. Anekonda W.T. Adams S.N. Aitken D.B. Neale K.D. Jermstad N.C. Wheeler 2000b Genetics of cold-hardiness in a cloned full-sib family of coastal Douglas-fir Can. J. Forest Res. 30 837 840
8. R.D. Ball 2001 Bayesian methods for quantitative trait loci mapping based on model selection: appropriate analysis using the Bayesian information criterion Genetics 159 1351 1364
9. Beavis W.D. 1994. The power and deceit of QTL experiments: lessons from comparative QTL studies. In: Proc. 49th Annual Corn and Sorghum Indus. Res. Conf., pp. 304-312.
10. L.T. Binh K. Oono 1992 Molecular cloning and characterization of genes related to chilling tolerance in rice Plant Physiol. 99 1146 1150
11. H.D. Bradshaw 1996 Molecular genetics of Populus R.F. Stettler H.D. Bradshaw P.E. Heilman T.M. Hinckley Biology of Populusits Implications for Management and Conservation Part 1, Chapter 8. NRC Res. Press, Nat. Res. Coun. Can. Ottawa, ON 183 199
12. G.R. Brown D.L. Bassoni G.P. Gill J.R. Fontana N.C. Wheeler R.A. Megraw et al. 2003 Identification of quantitative trait loci influencing wood property traits in loblolly pine (Pinus taeda L.) III. QTL verification and candidate gene mapping Genetics 164 1537 1546
13. L.R. Cardon J.L. Bell 2001 Association study designs for complex diseases Nat. Rev. Genet. 2 91 99
14. S. Chang J.D. Puryear M.A.D.L. Dias E.A. Funkhouser R.J. Newton J. Cairney 1996 Gene expression under water deficit in loblolly pine (Pinus taeda): Isolation and characterization of cDNA clones Physiol. Plantarum 97 139 148
15. A. Darvasi M. Soller 1997 A simple method to calculate resolving power and confidence interval of QTL maplocation Behavior Genetics 27 2 125 132
16. C. Dubos G. Le Provost D. Pot F. Saline C. Lalane D. Madur J.M. Frigerio C. Plomion 2003 Identification and characterization of water-stress-responsive genes in hydroponically grown maritime pine (Pinus pinaster) seedlings Tree Physiol. 23 169 179
17. M.D. Edwards C.W. Stuber J.F. Wendel 1987 Molecular marker-facilitated investigations of quantitative trait loci in maize. I. Numbers, genomic distribution and types of gene action Genetics 116 113 125
18. D.S. Falconer T.F.C. MacKay 1996 Introduction to Quantitative Genetics, 4th ed Longman Scientific and Technical Essex, UK
19. W. Feller 1968 The hypergeometric series §2.6 An Introduction to Probability Theory and its Applications, Vol. 1, 3rd ed Wiley New York 41 45
20. H.L. Flint B.R. Boyce D.J. Beattie 1967 Index of injury - a useful expression of freezing injury to plant tissues as determined by the electrolytic method Can. J. Plant. Sci. 47 229 230
21. B.E. Frewen T.H.H. Chen G.T. Howe A. Davis J. Rohde W. Boerjan et al. 2000 Quantitative trait loci and candidate gene mapping of bud set and bud flush in Populus Genetics 154 837 845
22. M. Hannerz S.N. Aitken J.N. King S. Budge 1999 Effects of genetic selection for growth on frost hardiness in western hemlock Can. J. Forest Res. 29 509 516
23. G.T. Howe S.N. Aitken D.B. Neale K.D. Jermstad N.C. Wheeler T.H.H. Chen 2003 From genotype to phenotype: unraveling the complexities of cold adaptation in forest trees Can. J. Bot. 81 1247 1266
24. K.D. Jermstad D.L. Bassoni K.S. Jech G.A. Ritchie N.C. Wheeler D.B. Neale 2003 Mapping of quantitative trait loci controlling adaptive traits in coastal Douglas-fir. III. QTL by environment interactions Genetics 165 1489 1506
25. K.D. Jermstad D.L. Bassoni K.S. Jech N.C. Wheeler D.B. Neale 2001a Mapping of quantitative trait loci controlling adaptive traits in coastal Douglas-fir. I. Spring bud flush Theor. Appl. Genet. 102 1142 1151
26. K.D. Jermstad D.L. Bassoni N.C. Wheeler T.S. Anekonda S.N. Aitken W.T. Adams D.B. Neale 2001b Mapping of quantitative trait loci controlling adaptive traits in coastal Douglas-fir. II. Spring and fall cold-hardiness Theor. Appl. Genet. 102 1152 1158
27. K.D. Jermstad D.L. Bassoni N.C. Wheeler D.B. Neale 1998 A sex-averaged genetic linkage map in coastal Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco var 'menziesii') based on RFLP and RAPD markers Theor. Appl. Genet. 97 797 802
28. G.R. Johnson N.C. Wheeler S.H. Strauss 2000 Financial feasibility of marker-aided-selection in Douglas-fir Can. J. Forest Res. 30 1942 1952
29. T. Kiyosue K. Yamaguchi-Shinozaki K. Shinozaki 1994 ERD15, a cDNA for a dehydration-induced gene from Arabidopsis thaliana Plant Physiol. 106 1707
30. S.A. Knott D.B. Neale M.M. Sewell C.S. Haley 1997 Multiple marker mapping of quantitative trait loci in an outbred pedigree of loblolly pine Theor. Appl. Genet. 94 810 820
31. Krutovsky K.V., Troggio M., Brown G.R., Jermstad K.D. and Neale D.B. 2004. Comparative mapping in the Pinaceae. Genetics 168: 447-461.
32. Lander E.S. and Botstein D. 1989. Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121: 185-199.
33. D.B. Neale O. Savolainen 2004 Association genetics of complex traits in conifers Trends Plant Sci. 9 325 330
34. D.M. O'Malley S.E. McKeand 1994 Marker-assisted selection for breeding value in forest trees Forest Genet. 1 207 218
35. G.A. O'Neill W.T. Adams S.N. Aitken 2001 Quantitative genetics of spring and fall cold hardiness in seedlings from two Oregon populations of coastal Douglas-fir Forest Ecol. Manage. 149 305 318
36. G.A. O'Neill S.N. Aitken W.T. Adams 2000 Genetic selection for cold hardiness in coastal Douglas-fir seedlings and saplings Can. J. Forest Res. 30 1799 1807
37. A.H. Paterson 1998 Molecular Dissection of Complex Traits CRC Press LLC Boca Raton, FL
38. A. Rafalski 2002 Applications of single nucleotide polymorphisms in crop genetics Curr. Opin. Plant Biol. 5 94 100
39. N.J. Risch 2000 Searching for genetic determinants in the new millennium Nature 405 847 856
40. M.M. Sewell D.L. Bassoni R.A. Megraw N.C. Wheeler 2000 Identification of QTL influencing wood property traits in loblolly pine (Pinus taeda L.). I. Physical wood properties Theor. Appl. Genet. 101 1273 1281
41. M.M. Sewell M.F. Davis G.A. Tuskin N.C. Wheeler C.C. Elam D.L. Bassoni D.B. Neale 2002 Identification of QTL influencing wood property traits in loblolly pine (Pinus taeda L.). II. Chemical wood properties Theor. Appl. Genet. 104 214 222
42. M.M. Sewell D.B. Neale 2000 Mapping quantitative traits in forest trees S.M. Jain S.C. Minocha Molecular Biology of Woody Plants Kluwer Academic Publishers Dordrecht, The Netherlands 407 424
43. M.R. Spiegel 1992 Theory and Problems of Probability and Statistics McGraw-Hill NY 113 114
44. TM Version 2.0: Software for the Calculation of Genetic Linkage Maps CPRO-DLO Wageningen, Germany
45. S.H. Strauss R. Lande G. Namkoong 1992 Limitations of molecular-marker-aided selection in forest tree breeding Can. J. Forest Res. 22 1050 1061
46. B. Temesgen G.R. Brown D.E. Harry C.S. Kinlaw M.M. Sewell et al 2001 Genetic mapping of expressed sequence tag polymorphism (ESTP) markers in loblolly pine (Pinus taeda L.) Theor. Appl. Genet. 102 664 675
47. M.F. Thomashow 1999 Plant cold acclimation: freezing tolerance genes and regulatory mechanisms Annu. Rev. Plant Physiol. Plant Mol. Biol. 50 571 599
48. J.M. Thornsberry M.M. Goodman J. Doebley S. Kresovich D. Nielsen E.S. Bucker IV 2001 Dwarf8 polymorphisms associate with variation in flowering time Nat. Genet. 28 286 289
49. R.E. Voorrips 2002 MapChart: software for the graphical presentation of linkage maps and QTL J. Hered. 93 77 78
50. P.L. Wilcox T.E. Richardson S.D. Carson 1997 Nature of quantitative trait variation in Pinus radiata: insights from QTL detection experiments R.D. Burdon J.M. Moore Proc. IUFRO'997: Genetics of Radiata Pine. FRI Bull. No. 203 Rotorua New Zealand 304 312
51. P.L. Wilcox S.D. Carson T.E. Richardson R.D. Ball G.P. Horgan P. Carter 2001 Cost-benefit analysis of marker based selection in seed orchard production populations of Pinus radiata Can. J. Forest Res. 31 2213 2224
52. C.G. Williams D.B. Neale 1992 Conifer wood quality and marker-aided selection: a case study Can. J. Forest Res. 22 1009 1017