-
1
-
-
0026591751
-
Crystal Structure of 4-Stranded Oxytricha Telomeric DNA
-
Kang, C., Zhang, X. H., Ratliff, R., Moyzis, R., and Rich, A. (1992) Crystal Structure of 4-Stranded Oxytricha Telomeric DNA, Nature 356, 126-131.
-
(1992)
Nature
, vol.356
, pp. 126-131
-
-
Kang, C.1
Zhang, X.H.2
Ratliff, R.3
Moyzis, R.4
Rich, A.5
-
2
-
-
0026554887
-
Quadruplex structure of Oxytricha telomeric DNA oligonucleotides
-
Smith, F. W., and Feigon, J. (1992) Quadruplex structure of Oxytricha telomeric DNA oligonucleotides, Nature 356, 164-8.
-
(1992)
Nature
, vol.356
, pp. 164-168
-
-
Smith, F.W.1
Feigon, J.2
-
3
-
-
0029081052
-
Solution structure of the Oxytricha telomeric repeat d[G4(T4G4)3] G-tetraplex
-
Wang, Y., and Patel, D. J. (1995) Solution structure of the Oxytricha telomeric repeat d[G4(T4G4)3] G-tetraplex, J. Mol. Biol. 251, 76-94.
-
(1995)
J. Mol. Biol.
, vol.251
, pp. 76-94
-
-
Wang, Y.1
Patel, D.J.2
-
4
-
-
0035979714
-
V-shaped scaffold: A new architectural motif identified in an a x (G x G x G x G) pentad-containing dimeric DNA quadruplex involving stacked G(anti) x G(anti) x G(anti) x G(syn) tetrads
-
Zhang, N., Gorin, A., Majumdar, A., Kettani, A., Chernichenko, N., Skripkin, E., and Patel, D. J. (2001) V-shaped scaffold: a new architectural motif identified in an A x (G x G x G x G) pentad-containing dimeric DNA quadruplex involving stacked G(anti) x G(anti) x G(anti) x G(syn) tetrads, J. Mol. Biol. 311, 1063-79.
-
(2001)
J. Mol. Biol.
, vol.311
, pp. 1063-1079
-
-
Zhang, N.1
Gorin, A.2
Majumdar, A.3
Kettani, A.4
Chernichenko, N.5
Skripkin, E.6
Patel, D.J.7
-
5
-
-
0034737307
-
A dimeric DNA interface stabilized by stacked A:(G:G:G:G):A hexads and coordinated monovalent cations
-
Kettani, A., Gorin, A., Majumdar, A., Hermann, T., Skripkin, E., Zhao, H., Jones, R., and Patel, D. J. (2000) A dimeric DNA interface stabilized by stacked A:(G:G:G:G):A hexads and coordinated monovalent cations, J. Mol. Biol. 297, 627-44.
-
(2000)
J. Mol. Biol.
, vol.297
, pp. 627-644
-
-
Kettani, A.1
Gorin, A.2
Majumdar, A.3
Hermann, T.4
Skripkin, E.5
Zhao, H.6
Jones, R.7
Patel, D.J.8
-
6
-
-
0035914469
-
An intramolecular quadruplex of (GGA)(4) triplet repeat DNA with a G:G:G:G tetrad and a G(:A):G(:A):G(:A):G heptad and its dimeric interaction
-
Matsugami, A., Ouhashi, K., Kanagawa, M., Liu, H., Kanagawa, S., Uesugi, S., and Katahira, M. (2001) An intramolecular quadruplex of (GGA)(4) triplet repeat DNA with a G:G:G:G tetrad and a G(:A):G(:A):G(:A):G heptad and its dimeric interaction, J. Mol. Biol. 313, 255-69.
-
(2001)
J. Mol. Biol.
, vol.313
, pp. 255-269
-
-
Matsugami, A.1
Ouhashi, K.2
Kanagawa, M.3
Liu, H.4
Kanagawa, S.5
Uesugi, S.6
Katahira, M.7
-
7
-
-
0348111222
-
Association of DNA Quadruplexes through G:C:G:C:G Tetrads. Solution Structure of d(GCGGTG-GAT)
-
Webba da Silva, M. (2003) Association of DNA Quadruplexes through G:C:G:C:G Tetrads. Solution Structure of d(GCGGTG-GAT), Biochemistiy 42, 14356-14365.
-
(2003)
Biochemistiy
, vol.42
, pp. 14356-14365
-
-
Webba Da Silva, M.1
-
8
-
-
14844340333
-
Identification of a G to a mutation in the c-MYC repressor element that results in inactivation of the G-quadruplex repressor element and overexpression of c-MYC in human colorectal cancer
-
Grand, C. L., Powell, T. J., Nagle, R. B., Bearss, D. J., and Hurley, L. H. (2003) Identification of a G to A mutation in the c-MYC repressor element that results in inactivation of the G-quadruplex repressor element and overexpression of c-MYC in human colorectal cancer, Clin. Cancer Res. 9, 6125S.
-
(2003)
Clin. Cancer Res.
, vol.9
-
-
Grand, C.L.1
Powell, T.J.2
Nagle, R.B.3
Bearss, D.J.4
Hurley, L.H.5
-
9
-
-
0343359244
-
Investigation of Exchange Processes by 2-D NMR Spectroscopy
-
Jeener, J., Meier, B. H., Bachmann, P., and Ernst, R. R. (1979) Investigation of Exchange Processes by 2-D NMR Spectroscopy, J. Chem. Phys. 71, 4546-4553.
-
(1979)
J. Chem. Phys.
, vol.71
, pp. 4546-4553
-
-
Jeener, J.1
Meier, B.H.2
Bachmann, P.3
Ernst, R.R.4
-
10
-
-
0005963761
-
Multiple Quantum Filters for Elucidating NMR Coupling Networks
-
Piantini, U., Sorensen, O. W., and Ernst, R. R. (1982) Multiple Quantum Filters for Elucidating NMR Coupling Networks, J. Am. Chem. Soc. 104, 6800-6801.
-
(1982)
J. Am. Chem. Soc.
, vol.104
, pp. 6800-6801
-
-
Piantini, U.1
Sorensen, O.W.2
Ernst, R.R.3
-
11
-
-
0344448273
-
Coherence Transfer by Isotropic Mixing-Application to Proton Correlation Spectroscopy
-
Braunschweiler, L., and Ernst, R. R. (1983) Coherence Transfer by Isotropic Mixing-Application to Proton Correlation Spectroscopy, J. Magn. Reson. 53, 521-528.
-
(1983)
J. Magn. Reson.
, vol.53
, pp. 521-528
-
-
Braunschweiler, L.1
Ernst, R.R.2
-
13
-
-
0030156432
-
NMR investigation of RNA structure
-
Varani, G., Abouela, F., and Allain, F. H. T. (1996) NMR investigation of RNA structure, Prog. Nucl. Magn. Reson. Spectrosc. 29, 51-127.
-
(1996)
Prog. Nucl. Magn. Reson. Spectrosc.
, vol.29
, pp. 51-127
-
-
Varani, G.1
Abouela, F.2
Allain, F.H.T.3
-
15
-
-
33845555707
-
Exchangeable proton NMR without baseline distortion, using new strong-pulse sequences
-
Gueron, M., and Plateau, P. (1982) Exchangeable proton NMR without baseline distortion, using new strong-pulse sequences, J. Am. Chem. Soc. 104, 7310-7311.
-
(1982)
J. Am. Chem. Soc.
, vol.104
, pp. 7310-7311
-
-
Gueron, M.1
Plateau, P.2
-
16
-
-
0026951903
-
Gradient-Tailored Excitation for Single-Quantum NMR Spectroscopy of Aqueous Solutions
-
Piotto, M., Saudek, V., and Sklenar, V. (1992) Gradient-Tailored Excitation for Single-Quantum NMR Spectroscopy of Aqueous Solutions, J. Biomol. NMR 2, 661-665.
-
(1992)
J. Biomol. NMR
, vol.2
, pp. 661-665
-
-
Piotto, M.1
Saudek, V.2
Sklenar, V.3
-
18
-
-
14844349663
-
-
Ph.D. Thesis, Department of Molecular Biophysics and Biochemistry, Yale University, New Haven
-
Brunger, A. T. (1992) Ph.D. Thesis, Department of Molecular Biophysics and Biochemistry, Yale University, New Haven.
-
(1992)
-
-
Brunger, A.T.1
-
19
-
-
0013293280
-
The Xplor-NIH NMR Molecular Structure Determination Package
-
Schwieters, C. D., Kuszewski, J. J., Tjandra, N., and Clore, G. M. (2003) The Xplor-NIH NMR Molecular Structure Determination Package, J. Magn. Reson. 160, 66-74.
-
(2003)
J. Magn. Reson.
, vol.160
, pp. 66-74
-
-
Schwieters, C.D.1
Kuszewski, J.J.2
Tjandra, N.3
Clore, G.M.4
-
20
-
-
84986512474
-
CHARMM: A program for macromolecular energy minimization and dynamics calculations
-
Brooks, B. R., Bruccoleri, R. E., Olafson, B. D., States, D. J., Swaminathan, S., and Karplus, M. (1983) CHARMM: A program for macromolecular energy minimization and dynamics calculations, J. Comput. Chem. 4, 187-217.
-
(1983)
J. Comput. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
22
-
-
0000353016
-
The use of NMR methods for conformational studies of nucleic acids
-
Wijmenga, S. S., and van Buuren, B. N. M. (1998) The use of NMR methods for conformational studies of nucleic acids, Prog. Nucl. Magn. Reson. Spectrosc. 32, 287-387.
-
(1998)
Prog. Nucl. Magn. Reson. Spectrosc.
, vol.32
, pp. 287-387
-
-
Wijmenga, S.S.1
Van Buuren, B.N.M.2
-
23
-
-
0027918585
-
Solution Structure of the Human Telomeric Repeat D Ag(3)(T(2)Ag(3))3 G-Tetraplex
-
Wang, Y., and Patel, D. J. (1993) Solution Structure of the Human Telomeric Repeat D Ag(3)(T(2)Ag(3))3 G-Tetraplex, Structure 1, 263-282.
-
(1993)
Structure
, vol.1
, pp. 263-282
-
-
Wang, Y.1
Patel, D.J.2
-
24
-
-
0042847316
-
Intramolecular higher order packing of parallel quadruplexes comprising a G:G:G:G tetrad and a G(:A):G(:A):G(:A):G heptad of GGA triplet repeat DNA
-
Matsugami, A., Okuizumi, T., Uesugi, S., and Katahira, M. (2003) Intramolecular higher order packing of parallel quadruplexes comprising a G:G:G:G tetrad and a G(:A):G(:A):G(:A):G heptad of GGA triplet repeat DNA, J. Biol. Chem. 278, 28147-28153.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 28147-28153
-
-
Matsugami, A.1
Okuizumi, T.2
Uesugi, S.3
Katahira, M.4
-
25
-
-
12644293826
-
The bi-loop, a new general four-stranded DNA motif
-
Salisbury, S. A., Wilson, S. E., Powell, H. R., Kennard, O., Lubini, P., Sheldrick, G. M., Escaja, N., Alazzouzi, E., Grandas, A., and Pedroso, E. (1997) The bi-loop, a new general four-stranded DNA motif, Proc. Natl. Acad. Sci. U.S.A. 94, 5515-8.
-
(1997)
Proc. Natl. Acad. Sci. U.S.A.
, vol.94
, pp. 5515-5518
-
-
Salisbury, S.A.1
Wilson, S.E.2
Powell, H.R.3
Kennard, O.4
Lubini, P.5
Sheldrick, G.M.6
Escaja, N.7
Alazzouzi, E.8
Grandas, A.9
Pedroso, E.10
-
26
-
-
0035812604
-
Dimeric DNA quadruplex containing major groove-aligned A-T-A-T and G-C-G-C tetrads stabilized by intersubunit Watson-Crick A-T and G-C pairs
-
Zhang, N., Gorin, A., Majumdar, A., Kettani, A., Chernichenko, N., Skripkin, E., and Patel, D. J. (2001) Dimeric DNA quadruplex containing major groove-aligned A-T-A-T and G-C-G-C tetrads stabilized by intersubunit Watson-Crick A-T and G-C pairs, J. Mol. Biol. 312, 1073-88.
-
(2001)
J. Mol. Biol.
, vol.312
, pp. 1073-1088
-
-
Zhang, N.1
Gorin, A.2
Majumdar, A.3
Kettani, A.4
Chernichenko, N.5
Skripkin, E.6
Patel, D.J.7
-
27
-
-
0025269255
-
A Sodium-Potassium Switch in the Formation of 4-Stranded G4-DNA
-
Sen, D., and Gilbert, W. (1990) A Sodium-Potassium Switch in the Formation of 4-Stranded G4-DNA, Nature 344, 410-414.
-
(1990)
Nature
, vol.344
, pp. 410-414
-
-
Sen, D.1
Gilbert, W.2
-
28
-
-
0028774726
-
Solution structure of the Tetrahymena telomeric repeat d(T2G4)4 G-tetraplex
-
Wang, Y., and Patel, D. J. (1994) Solution structure of the Tetrahymena telomeric repeat d(T2G4)4 G-tetraplex, Structure 2, 1141-56.
-
(1994)
Structure
, vol.2
, pp. 1141-1156
-
-
Wang, Y.1
Patel, D.J.2
-
29
-
-
0035967879
-
A double chain reversal loop and two diagonal loops define the architecture of a unimolecular DNA quadruplex containing a pair of stacked G(syn)-G(syn)-G(anti)-G(anti) tetrads flanked by a G- (T-T) Triad and a T-T-T triple
-
Kuryavyi, V., Majumdar, A., Shallop, A., Chernichenko, N., Skripkin, E., Jones, R., and Patel, D. J. (2001) A double chain reversal loop and two diagonal loops define the architecture of a unimolecular DNA quadruplex containing a pair of stacked G(syn)-G(syn)-G(anti)-G(anti) tetrads flanked by a G- (T-T) Triad and a T-T-T triple, J. Mol. Biol. 310, 181-94.
-
(2001)
J. Mol. Biol.
, vol.310
, pp. 181-194
-
-
Kuryavyi, V.1
Majumdar, A.2
Shallop, A.3
Chernichenko, N.4
Skripkin, E.5
Jones, R.6
Patel, D.J.7
-
30
-
-
0037142071
-
Crystal structure of parallel quadruplexes from human telomeric DNA
-
Parkinson, G. N., Lee, M. P., and Neidle, S. (2002) Crystal structure of parallel quadruplexes from human telomeric DNA, Nature 417, 876-80.
-
(2002)
Nature
, vol.417
, pp. 876-880
-
-
Parkinson, G.N.1
Lee, M.P.2
Neidle, S.3
-
31
-
-
0038202304
-
Small change in a G-rich sequence, a dramatic change in topology: New dimeric G-quadruplex folding motif with unique loop orientations
-
Cmugelj, M., Sket, P., and Plavec, J. (2003) Small change in a G-rich sequence, a dramatic change in topology: New dimeric G-quadruplex folding motif with unique loop orientations, J. Am. Chem. Soc. 125, 7866-71.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 7866-7871
-
-
Cmugelj, M.1
Sket, P.2
Plavec, J.3
-
32
-
-
0036519363
-
DNA and its associated processes as targets for cancer therapy
-
Hurley, L. H. (2002) DNA and its associated processes as targets for cancer therapy, Nat. Rev. Cancer 2, 188-200.
-
(2002)
Nat. Rev. Cancer
, vol.2
, pp. 188-200
-
-
Hurley, L.H.1
-
33
-
-
0035206465
-
Secondary DNA structures as molecular targets for cancer therapeutics
-
Hurley, L. H. (2001) Secondary DNA structures as molecular targets for cancer therapeutics, Biochem. Soc. Trans. 29, 692-6.
-
(2001)
Biochem. Soc. Trans.
, vol.29
, pp. 692-696
-
-
Hurley, L.H.1
-
34
-
-
1942533478
-
Mutations in the G-quadruplex silencer element and their relationship to c-MYC overexpression, NM23 repression, and therapeutic rescue
-
Grand, C. L., Powell, T. J., Nagle, R. B., Bearss, D. J., Tye, D., Gleason-Guzman, M., and Hurley, L. H. (2004) Mutations in the G-quadruplex silencer element and their relationship to c-MYC overexpression, NM23 repression, and therapeutic rescue, Proc. Natl. Acad. Sci. U.S.A. 101, 6140-5.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 6140-6145
-
-
Grand, C.L.1
Powell, T.J.2
Nagle, R.B.3
Bearss, D.J.4
Tye, D.5
Gleason-Guzman, M.6
Hurley, L.H.7
-
35
-
-
0037015078
-
Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription
-
Siddiqui-Jain, A., Grand, C. L., Bearss, D. J., and Hurley, L. H. (2002) Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription, Proc. Natl. Acad Sci. U.S.A. 99, 11593-8.
-
(2002)
Proc. Natl. Acad Sci. U.S.A.
, vol.99
, pp. 11593-11598
-
-
Siddiqui-Jain, A.1
Grand, C.L.2
Bearss, D.J.3
Hurley, L.H.4
-
36
-
-
14844343391
-
Two different chair-type G-quadruplex structures can form in the c-MYC silencer element and only one is stabilized by drugs
-
Seenisamy, J., Siddiqui-Jain, A., and Hurley, L. H. (2003) Two different chair-type G-quadruplex structures can form in the c-MYC silencer element and only one is stabilized by drugs, Clin. Cancer Res. 9, 6083S.
-
(2003)
Clin. Cancer Res.
, vol.9
-
-
Seenisamy, J.1
Siddiqui-Jain, A.2
Hurley, L.H.3
-
37
-
-
3242691283
-
The dynamic character of the G-quadruplex element in the c-MYC promoter and modification by TMPyP4
-
Seenisamy, J., Rezler, E. M., Powell, T. J., Tye, D., Gokhale, V., Joshi, C. S., Siddiqui-Jain, A., and Hurley, L. H. (2004) The dynamic character of the G-quadruplex element in the c-MYC promoter and modification by TMPyP4, J. Am. Chem. Soc. 126, 8702-8709.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 8702-8709
-
-
Seenisamy, J.1
Rezler, E.M.2
Powell, T.J.3
Tye, D.4
Gokhale, V.5
Joshi, C.S.6
Siddiqui-Jain, A.7
Hurley, L.H.8
-
38
-
-
3242666778
-
Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter
-
Phan, A. T., Modi, Y. S., and Patel, D. J. (2004) Propeller-type parallel-stranded G-quadruplexes in the human c-myc promoter, J. Am. Chem. Soc. 126, 8710-6.
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 8710-8716
-
-
Phan, A.T.1
Modi, Y.S.2
Patel, D.J.3
-
39
-
-
0345098322
-
Two-repeat human telomeric d(TAGGGTTAGGGT) sequence forms interconverting parallel and antiparallel G-quadruplexes in solution: Distinct topologies, thermodynamic properties, and folding/unfolding kinetics
-
Phan, A. T., and Patel, D. J. (2003) Two-repeat human telomeric d(TAGGGTTAGGGT) sequence forms interconverting parallel and antiparallel G-quadruplexes in solution: Distinct topologies, thermodynamic properties, and folding/unfolding kinetics, J. Am. Chem. Soc. 125, 15021-7.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 15021-15027
-
-
Phan, A.T.1
Patel, D.J.2
-
40
-
-
0036597090
-
The cationic porphyrin TMPyP4 down-regulates c-MYC and human telomerase reverse transcriptase expression and inhibits tumor growth in vivo
-
Grand, C. L., Han, H., Munoz, R. M., Weitman, S., Von Hoff, D. D., Hurley, L. H., and Bearss, D. J. (2002) The cationic porphyrin TMPyP4 down-regulates c-MYC and human telomerase reverse transcriptase expression and inhibits tumor growth in vivo, Mol. Cancer Ther. 1, 565-73.
-
(2002)
Mol. Cancer Ther.
, vol.1
, pp. 565-573
-
-
Grand, C.L.1
Han, H.2
Munoz, R.M.3
Weitman, S.4
Von Hoff, D.D.5
Hurley, L.H.6
Bearss, D.J.7
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