HLA-DPA1 promoter haplotypes are differently distributed in southern Chinese ethnic groups

Tissue Antigens

Volumn 65, Issue 2, 2005, Pages 172-177

  Liu, X ^a   Xu, Y ^a   Shen, Y ^a   Zhang, H ^a   Fu, Y ^a   Liu, Z ^a   Xu, Anlong ^a  

^a SUN YAT SEN UNIVERSITY   (China)

Author keywords

Chinese ethnics; HLA DPA1; Polymorphism; Promoter

Indexed keywords

GENOMIC DNA; HLA DP ANTIGEN; HLA DPA1 ANTIGEN; UNCLASSIFIED DRUG;

ALLELE; ARTICLE; CHINESE; ETHNIC GROUP; HAPLOTYPE; HLA SYSTEM; HUMAN; IMMUNOGENETICS; NORMAL HUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; POPULATION GENETICS; PRIORITY JOURNAL; PROMOTER REGION; SINGLE NUCLEOTIDE POLYMORPHISM;

ALLELES; ASIAN CONTINENTAL ANCESTRY GROUP; ETHNIC GROUPS; GENE FREQUENCY; GENOTYPE; HAPLOTYPES; HLA-DP ANTIGENS; HUMANS; PHYLOGENY; POLYMORPHISM, SINGLE NUCLEOTIDE; PROMOTER REGIONS (GENETICS);

EID: 14844328135     PISSN: 00012815     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1399-0039.2005.00355.x     Document Type: Article

References (27)

1. Ivanova R, Naoumova E, Lepage V et al. HLA-DRB1, DQA1, DQB1 DNA polymorphism in the Bulgarian population. Tissue Antigens 1996: 47: 122-6.
2. Clayton J, Lonjou C, Whittle D. Allele and haplotype frequencies for HLA loci in various ethnic groups. In: Charron D, ed. Genetic Diversity of HLA Functional and Medical Implication. Paris: EDK Medical and Scientific International Publisher, 1997: 665-819.
3. Mizuki M, Ohno S, Ando H et al. Major histocompatibility complex class II alleles in Kazak and Han populations in the Silk Route of northwestern China. Tissue Antigens 1997: 50: 527-34.
4. Mizuki N, Ohno S, Ando H et al. Major histocompatibility complex class II alleles in an Uygur population in the Silk Route of northwest China. Tissue Antigens 1998: 51: 287-92.
5. Papassavas EC, Spyropoulou-Vlachou M, Papassavas AC, Schipper RF, Doxiadis IN, Stavropoulos-Giokas C. MHC class I and class II phenotype, gene and haplotype frequencies in Greeks using molecular typing data. Hum Immunol 2000: 61: 615-23.
6. Liu ZH, Lin J, Pan D, Chen W, Tao H, Xu A. HLA-DPB1 allelic frequency of the Pumi ethnic group in south-west China and evolutionary relationship of Pumi with other populations. Eur J Immunogenet 2002: 29: 259-61.
7. Liu X, Liu Z, Lin B et al. A Catalog of 162 single nucleotide polymorphisms (SNPs) in a 4.7kb region of the HLA-DP loci in southern Chinese ethnic groups. J Hum Genet 2004: 49: 73-9.
8. Chen XY, Cai L. Development and vicissitude: the history of all ethnics. In: Zhang DN, ed. Encyclopaedia of Chinese Art. Hangzhou: The people's Press of Zhejiang, 1998: 40-70.
9. Zhu WW. On origins of Bai Nationality. In: Zhao YS, ed. The Cultural Research of Bai Nationality. Beijing: The Ethnic Publishing House, 2003: 93-122.
10. Chu JY, Huang W, Kuang SQ et al. Genetic relationship of populations in China. Proc Natl Acad Sci USA 1998: 95: 11763-8.
11. Ding YC, Wooding S, Harpending HC et al. Population structure and history in East Asia. Proc Natl Acad Sci USA 2000: 97: 14003-6.
12. Yao YG, Nie L, Harpending H, Fu YX, Yuan ZG, Zhang YP. Genetic relationship of Chinese ethnic populations revealed by mtDNA sequence diversity. Am J Phys Anthropol 2002: 118: 63-76.
13. The editorial group for a brief history of Lahu nationalitie. Book Series of History of Chinese Minority Groups-a Brief History of Lahu Nationality. Kunming: The people's Press of Yunnan, 1986.
14. Yao YG, Zhang YP. Phylogeographic analysis of mtDNA variation in four ethnic populations from Yunnan Province: new data and a reappraisal. J Hum Genet 2002: 47: 311-8.
15. Jia Z, Fu Y, Pan D et al. Determination of HLA-DRB1 gene polymorphism by PCR-SBT in Lahu ethnic group of Yunnan, China. Hereditas (Beijing) 2002: 24: 131-6.
16. Lin J, Liu Z, Lv F et al. A Molecular analyses of HLA-DRB1-DPB1, and -DQB1 in Jing ethnic minority of southwest China. Hum Immunol 2003: 64: 830-4.
17. Thomson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: flexible strategies for multiple sequences alignment aided by quality analysis tools. Nucl Acids Res 1997: 25: 4876-82.
18. Schneider S, Roessli D, Excofier L. Arlequin Version 2.000: a Software for Population Genetics Data Analysis. Switzerland: Genetics and Biometry Laboratory, University of Geneva, 2000.
19. The International SNP, Map Working Group. A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature 2001: 409: 928-33.
20. Rozas J, Rozas R. DnaSP Version 3: An integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 1999: 15: 174-5.
21. Felsenstein J. PHYLIP (phylogeny inference package), Version 3.75c. Distributed by the Author. Seattle: Department of Genetics, University of Washington, 1993.
22. Kelly JK. A test of neutrality based on interlocus associations. Genetics 1997: 146: 1197-206.
23. Hill WG, Robertson A. Linkage disequilibrium in infinite populations. Theor Appl Genet 1968: 38: 226-31.
24. Su B, Xiao J, Underhill P et al. Y-Chromosome Evidence for a Northward Migration of Modern Humans into Eastern Asia during the Last Ice Age. Am J Hum Genet 1999: 65: 1718-24.
25. Du R, Yip VF. Ethnic Groups in China. Beijing: Science Press 1993.
26. Muller V, Bonhoeffer S. Quantitative constraints on the scope of negative selection. Trends Immunol 2003: 24: 132-5.
27. Werlen G, Hausmann B, Naeher D, Palmer E. Signaling life and death in the thymus: timing is everything. Science 2003: 299: 1859-63.