메뉴 건너뛰기




Volumn 346, Issue , 2005, Pages 133-143

The complete mitochondrial genome of a tree frog, Polypedates megacephalus (Amphibia: Anura: Rhacophoridae), and a novel gene organization in living amphibians

Author keywords

LA PCR; Mitochondrial genome; Rearrangement; Timescale; Tree frog

Indexed keywords

AMPHIBIA; ARTICLE; CONTROLLED STUDY; FROG; GENE AMPLIFICATION; GENE SEQUENCE; GENETIC CODE; GENOME; MITOCHONDRION; MOLECULAR DYNAMICS; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SALAMANDER;

EID: 14744296795     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2004.10.012     Document Type: Article
Times cited : (47)

References (40)
  • 1
    • 0019983804 scopus 로고
    • Complete sequence of bovine mitochondrial DNA. Conserved features of the mammalian mitochondrial genome
    • S. Anderson, M.H. de Bruijn, A.R. Coulson, I.C. Eperon, F. Sanger, and I.G. Young Complete sequence of bovine mitochondrial DNA. Conserved features of the mammalian mitochondrial genome J. Mol. Biol. 156 4 1982 683 717
    • (1982) J. Mol. Biol. , vol.156 , Issue.4 , pp. 683-717
    • Anderson, S.1    De Bruijn, M.H.2    Coulson, A.R.3    Eperon, I.C.4    Sanger, F.5    Young, I.G.6
  • 2
    • 2942529011 scopus 로고    scopus 로고
    • Mitogenomic analyses of deep gnathostome divergences: A fish is a fish
    • U. Arnason, A. Gullberg, A. Janke, J. Joss, and C. Elmerot Mitogenomic analyses of deep gnathostome divergences: a fish is a fish Gene 333 2004 61 70
    • (2004) Gene , vol.333 , pp. 61-70
    • Arnason, U.1    Gullberg, A.2    Janke, A.3    Joss, J.4    Elmerot, C.5
  • 3
    • 0004187047 scopus 로고    scopus 로고
    • Harvard Univ. Press London
    • J.C. Avise Phylogeography 2000 Harvard Univ. Press London 447
    • (2000) Phylogeography , pp. 447
    • Avise, J.C.1
  • 4
    • 0033999959 scopus 로고    scopus 로고
    • Frequent assimilation of mitochondrial DNA by grasshopper nuclear genomes
    • D. Bensasson, D.X. Zhang, and G.M. Hewitt Frequent assimilation of mitochondrial DNA by grasshopper nuclear genomes Mol. Biol. Evol. 17 3 2000 406 415
    • (2000) Mol. Biol. Evol. , vol.17 , Issue.3 , pp. 406-415
    • Bensasson, D.1    Zhang, D.X.2    Hewitt, G.M.3
  • 5
    • 0025287317 scopus 로고
    • Phylogeny of the major tetrapod groups: Morphological data and divergence dates
    • M.J. Benton Phylogeny of the major tetrapod groups: morphological data and divergence dates J. Mol. Evol. 30 1990 409 424
    • (1990) J. Mol. Evol. , vol.30 , pp. 409-424
    • Benton, M.J.1
  • 6
    • 0035815393 scopus 로고    scopus 로고
    • Amphibians as indicators of early tertiary out-of-India dispersal of vertebrates
    • F. Bossuyt, and M.C. Milinkovitch Amphibians as indicators of early tertiary out-of-India dispersal of vertebrates Science 292 2001 93 95
    • (2001) Science , vol.292 , pp. 93-95
    • Bossuyt, F.1    Milinkovitch, M.C.2
  • 7
    • 9144267069 scopus 로고    scopus 로고
    • Structural organization of mitochondrial human complex I: Role of the ND4 and ND5 mitochondria-encoded subunits and interaction with the prohibitin
    • I. Bourges, C. Ramus, B. Mousson De Camaret, R. Beugnot, C. Remacle, P. Cardol, G. Hofhaus, and J.P. Issartel Structural organization of mitochondrial human complex I: role of the ND4 and ND5 mitochondria-encoded subunits and interaction with the prohibitin Biochem. J. 383 Pt. 3 2004 491 499
    • (2004) Biochem. J. , vol.383 , Issue.3 PART , pp. 491-499
    • Bourges, I.1    Ramus, C.2    Mousson De Camaret, B.3    Beugnot, R.4    Remacle, C.5    Cardol, P.6    Hofhaus, G.7    Issartel, J.P.8
  • 8
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • J. Castresana Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis Mol. Biol. Evol. 17 2000 540 552
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 540-552
    • Castresana, J.1
  • 9
    • 0028082089 scopus 로고
    • The complete nucleotide sequence and gene organization of carp (Cyprinus carpio) mitochondrial genome
    • Y.S. Chang, F.L. Huang, and T.B. Lo The complete nucleotide sequence and gene organization of carp (Cyprinus carpio) mitochondrial genome J. Mol. Evol. 38 2 1994 138 155
    • (1994) J. Mol. Evol. , vol.38 , Issue.2 , pp. 138-155
    • Chang, Y.S.1    Huang, F.L.2    Lo, T.B.3
  • 10
    • 0025343497 scopus 로고
    • Sequence and gene organization of the chicken mitochondrial genome, a novel gene order in higher vertebrates
    • P. Desjardins, and R. Morais Sequence and gene organization of the chicken mitochondrial genome, a novel gene order in higher vertebrates J. Mol. Biol. 212 4 1990 599 634
    • (1990) J. Mol. Biol. , vol.212 , Issue.4 , pp. 599-634
    • Desjardins, P.1    Morais, R.2
  • 12
    • 0032087259 scopus 로고    scopus 로고
    • Molecular evidence for the early history of living amphibians
    • A.E. Feller, and S.B. Hedges Molecular evidence for the early history of living amphibians Mol. Phylogenet. Evol. 9 1998 509 516
    • (1998) Mol. Phylogenet. Evol. , vol.9 , pp. 509-516
    • Feller, A.E.1    Hedges, S.B.2
  • 13
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • J. Felsenstein Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 1985 783 791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 14
    • 0035967144 scopus 로고    scopus 로고
    • Late Jurassic salamanders from northern China
    • K.Q. Gao, and N. Shubin Late Jurassic salamanders from northern China Nature 410 2001 574 576
    • (2001) Nature , vol.410 , pp. 574-576
    • Gao, K.Q.1    Shubin, N.2
  • 17
    • 0036005522 scopus 로고    scopus 로고
    • Geographic origin of human mitochondrial DNA: Accommodating phylogenetic uncertainty and model comparison
    • J.P. Huelsenbeck, and N.S. Imennov Geographic origin of human mitochondrial DNA: accommodating phylogenetic uncertainty and model comparison Syst. Biol. 51 2002 155 165
    • (2002) Syst. Biol. , vol.51 , pp. 155-165
    • Huelsenbeck, J.P.1    Imennov, N.S.2
  • 18
    • 0032740650 scopus 로고    scopus 로고
    • The complete mitochondrial DNA sequence of the Atlantic salmon, Salmo salar
    • C.D. Hurst, S.E. Bartlett, W.S. Davidson, and I.J. Bruce The complete mitochondrial DNA sequence of the Atlantic salmon, Salmo salar Gene 239 1999 237 242
    • (1999) Gene , vol.239 , pp. 237-242
    • Hurst, C.D.1    Bartlett, S.E.2    Davidson, W.S.3    Bruce, I.J.4
  • 19
    • 0032580152 scopus 로고    scopus 로고
    • A molecular timescale for vertebrate evolution
    • S. Kumar, and S.B. Hedges A molecular timescale for vertebrate evolution Nature 392 1998 197 920
    • (1998) Nature , vol.392 , pp. 197-920
    • Kumar, S.1    Hedges, S.B.2
  • 20
    • 0023256559 scopus 로고
    • Slipped-strand mispairing: A major mechanism for DNA sequence evolution
    • G. Levinson, and G.A. Gutman Slipped-strand mispairing: a major mechanism for DNA sequence evolution Mol. Biol. Evol. 4 1987 203 221
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 203-221
    • Levinson, G.1    Gutman, G.A.2
  • 21
    • 0031984285 scopus 로고    scopus 로고
    • Tandem duplication via light-strand synthesis may provide a precursor for mitochondrial genomic rearrangement
    • J.R. Macey, J.A. Schulte, A. Larson, and T.J. Papenfuss Tandem duplication via light-strand synthesis may provide a precursor for mitochondrial genomic rearrangement Mol. Biol. Evol. 15 1998 71 75
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 71-75
    • MacEy, J.R.1    Schulte, J.A.2    Larson, A.3    Papenfuss, T.J.4
  • 22
    • 0002128338 scopus 로고
    • The relationships and origin of living amphibians
    • M.J. Benton Clarendon Press Oxford
    • A.R. Milner The relationships and origin of living amphibians M.J. Benton The Phylogeny and Classification of the Tetrapods 1988 Clarendon Press Oxford 59 102
    • (1988) The Phylogeny and Classification of the Tetrapods , pp. 59-102
    • Milner, A.R.1
  • 23
    • 0023433511 scopus 로고
    • Tandem duplications in animal mitochondrial DNAs: Variation in incidence and gene content among lizards
    • C. Moritz, and W.M. Brown Tandem duplications in animal mitochondrial DNAs: variation in incidence and gene content among lizards Proc. Natl. Acad. Sci. U. S. A. 84 1987 7183 7187
    • (1987) Proc. Natl. Acad. Sci. U. S. A. , vol.84 , pp. 7183-7187
    • Moritz, C.1    Brown, W.M.2
  • 24
    • 0034503382 scopus 로고    scopus 로고
    • Opinion: Long branch attraction and protist phylogeny
    • H. Philippe Opinion: long branch attraction and protist phylogeny Protist 151 2000 307 316
    • (2000) Protist , vol.151 , pp. 307-316
    • Philippe, H.1
  • 25
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • D. Posada, and K.A. Crandall MODELTEST: testing the model of DNA substitution Bioinformatics 14 9 1998 817 818
    • (1998) Bioinformatics , vol.14 , Issue.9 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 26
    • 0025267792 scopus 로고
    • The general stochastic model of nucleotide substitution
    • F. Rodriguez, J.L. Oliver, A. Marin, and J.R. Medina The general stochastic model of nucleotide substitution J. Theor. Biol. 142 4 1990 485 501
    • (1990) J. Theor. Biol. , vol.142 , Issue.4 , pp. 485-501
    • Rodriguez, F.1    Oliver, J.L.2    Marin, A.3    Medina, J.R.4
  • 27
    • 0021876634 scopus 로고
    • The complete nucleotide sequence of the Xenopus laevis mitochondrial genome
    • B.A. Roe, M. Din-Pow, R.K. Wilson, and J.F. Wong The complete nucleotide sequence of the Xenopus laevis mitochondrial genome J. Biol. Chem. 260 1985 9759 9774
    • (1985) J. Biol. Chem. , vol.260 , pp. 9759-9774
    • Roe, B.A.1    Din-Pow, M.2    Wilson, R.K.3    Wong, J.F.4
  • 28
    • 0032860013 scopus 로고    scopus 로고
    • Evolutionary genomics in Metazoa: The mitochondrial DNA as a model system
    • C. Saccone, C.D. Giorgi, C. Gissi, G. Pesole, and A. Reyes Evolutionary genomics in Metazoa: the mitochondrial DNA as a model system Gene 238 1999 195 209
    • (1999) Gene , vol.238 , pp. 195-209
    • Saccone, C.1    Giorgi, C.D.2    Gissi, C.3    Pesole, G.4    Reyes, A.5
  • 29
    • 0035203374 scopus 로고    scopus 로고
    • Complete nucleotide sequence and gene organization of the mitochondrial genome of the Japanese pond frog Rana nigromaculata
    • M. Sumida, Y. Kanamori, H. Kaneda, Y. Kato, M. Nishioka, and H. Yonekawa Complete nucleotide sequence and gene organization of the mitochondrial genome of the Japanese pond frog Rana nigromaculata Genes Genet. Syst. 76 5 2001 311 325
    • (2001) Genes Genet. Syst. , vol.76 , Issue.5 , pp. 311-325
    • Sumida, M.1    Kanamori, Y.2    Kaneda, H.3    Kato, Y.4    Nishioka, M.5    Yonekawa, H.6
  • 31
    • 0031574072 scopus 로고    scopus 로고
    • The clustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • J.D. Thompson, T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins The clustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res. 24 1997 4876 4882
    • (1997) Nucleic Acids Res. , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 32
    • 0036803223 scopus 로고    scopus 로고
    • Divergence time and evolutionary rate estimation with multilocus data
    • J.L. Thorne, and H. Kishino Divergence time and evolutionary rate estimation with multilocus data Syst. Biol. 51 2002 689 702
    • (2002) Syst. Biol. , vol.51 , pp. 689-702
    • Thorne, J.L.1    Kishino, H.2
  • 33
    • 0002503301 scopus 로고
    • A phylogenetic investigation of the inter- and intrarelationships of the Lissamphibia (Amphibia: Temnospondyli)
    • H.P. Schultze L. Trueb Cornell University Press Ithaca, NY
    • L. Trueb, and R. Cloutier A phylogenetic investigation of the inter- and intrarelationships of the Lissamphibia (Amphibia: Temnospondyli) H.P. Schultze L. Trueb Origins of the Major Groups of Tetrapods: Controversies and Consensus 1991 Cornell University Press Ithaca, NY 223 313
    • (1991) Origins of the Major Groups of Tetrapods: Controversies and Consensus , pp. 223-313
    • Trueb, L.1    Cloutier, R.2
  • 35
    • 0029916924 scopus 로고    scopus 로고
    • The complete nucleotide sequence of the mitochondrial genome of the lungfish (Protopterus dolloi) supports its phylogenetic position as a close relative of land vertebrates
    • R. Zardoya, and A. Meyer The complete nucleotide sequence of the mitochondrial genome of the lungfish (Protopterus dolloi) supports its phylogenetic position as a close relative of land vertebrates Genetics 142 4 1996 1249 1263
    • (1996) Genetics , vol.142 , Issue.4 , pp. 1249-1263
    • Zardoya, R.1    Meyer, A.2
  • 36
    • 0034044256 scopus 로고    scopus 로고
    • Mitochondrial evidence on the phylogenetic position of caecilians (Amphibia: Gymnophiona)
    • R. Zardoya, and A. Meyer Mitochondrial evidence on the phylogenetic position of caecilians (Amphibia: Gymnophiona) Genetics 155 2000 765 775
    • (2000) Genetics , vol.155 , pp. 765-775
    • Zardoya, R.1    Meyer, A.2
  • 37
    • 0035912836 scopus 로고    scopus 로고
    • On the origin of and phylogenetic relationships among living amphibians
    • R. Zardoya, and A. Meyer On the origin of and phylogenetic relationships among living amphibians Proc. Natl. Acad. Sci. U. S. A. 98 13 2001 7380 7383
    • (2001) Proc. Natl. Acad. Sci. U. S. A. , vol.98 , Issue.13 , pp. 7380-7383
    • Zardoya, R.1    Meyer, A.2
  • 38
    • 0030116955 scopus 로고    scopus 로고
    • Highly conserved nuclear copies of the mitochondrial control region in the desert locust Schistocerca gregaria: Some implications for population studies
    • D.X. Zhang, and G.M. Hewitt Highly conserved nuclear copies of the mitochondrial control region in the desert locust Schistocerca gregaria: some implications for population studies Mol. Ecol. 5 2 1996 295 300
    • (1996) Mol. Ecol. , vol.5 , Issue.2 , pp. 295-300
    • Zhang, D.X.1    Hewitt, G.M.2
  • 39
    • 0038737145 scopus 로고    scopus 로고
    • The Complete mitochondrial genome of a relic salamander, Ranodon sibiricus (amphibia: Caudata) and implications for amphibian phylogeny
    • P. Zhang, Y.Q. Chen, H. Zhou, X.L. Wang, and L.H. Qu The Complete mitochondrial genome of a relic salamander, Ranodon sibiricus (amphibia: caudata) and implications for amphibian phylogeny Mol. Phylogenet. Evol. 28 2003 620 626
    • (2003) Mol. Phylogenet. Evol. , vol.28 , pp. 620-626
    • Zhang, P.1    Chen, Y.Q.2    Zhou, H.3    Wang, X.L.4    Qu, L.H.5
  • 40
    • 0037633407 scopus 로고    scopus 로고
    • The complete mitochondrial genome of the Chinese giant salamander, Andrias davidianus (amphibia: Caudata)
    • P. Zhang, Y.Q. Chen, Y.F. Liu, H. Zhou, and L.H. Qu The complete mitochondrial genome of the Chinese giant salamander, Andrias davidianus (amphibia: caudata) Gene 311 2003 93 98
    • (2003) Gene , vol.311 , pp. 93-98
    • Zhang, P.1    Chen, Y.Q.2    Liu, Y.F.3    Zhou, H.4    Qu, L.H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.