DNA molecular photonics

Photochemistry and Photobiology

Volumn 81, Issue 1, 2005, Pages 65-72

  Lewis, Frederick D ^a  

^a NORTHWESTERN UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA; STILBENE; SYNTHETIC DNA;

CHROMATOPHORE; CIRCULAR DICHROISM; DNA STRUCTURE; DNA SYNTHESIS; ELECTRON TRANSPORT; MOLECULAR DYNAMICS; OXIDATION REDUCTION POTENTIAL; REVIEW;

DNA; ELECTRONS; NUCLEIC ACID CONFORMATION; PHOTONS;

EID: 14744278399     PISSN: 00318655     EISSN: None     Source Type: Journal    
DOI: 10.1562/2004-09-01-IR-299.1     Document Type: Review

References (47)

1. Crespo-Hernandez, C. E., B. Cohen, P. M. Hare and B. Kohler (2004) Ultrafast excited-state dynamics in nucleic acids. Chem. Rev. 104, 1977-2019.
2. Morrison, H. (1990) Bioorganic Photochemistry, Vol. 1: Photochemistry and the Nucleic Acids. Wiley-Interscience, New York.
3. Cai, Z. and M. D. Sevilla (2004) Studies of excess electron and hole transfer in DNA at low temperature. Top. Curr. Chem. 237, 103-128.
4. Kovalsky, O. I., I. G. Panyutin and E. J. Budowsky (1990) Sequence-specificity of the alkali-sensitive lesions induced in DNA by high-intensity ultraviolet laser radiation. Photochem. Photobiol. 52, 509-517.
5. Steenken, S. and S. V. Jovanovic (1997) How easily oxidizable is DNA? One-electron reduction potentials of adenosine and gunaosine radicals in aqueous solution. J. Am. Chem. Soc. 119, 617-618.
6. Murphy, C. J., M. R. Arkin, Y. Jenkins, N. D. Ghatlia, S. H. Bossmann, N. J. Turro and J. K. Barton (1993) Long-range photoinduced electron transfer through a DNA helix. Science 262, 1025-1029.
7. Murphy, C. J., M. R. Arkin, N. D. Ghatlia, S. Bossmann, N. J. Turro and J. K. Barton (1994) Fast photoinduced electron transfer through DNA intercalation. Proc. Natl. Acad. Sci. USA 91, 5315-5319.
8. Meade, T. J. and J. F. Kayyem (1995) Electron transfer through DNA: site-specific modification of duplex DNA with ruthenium donors and acceptors. Angew. Chem. Int. Ed. Engl. 34, 352-354.
9. Barbara, P. F. and E. J. C. Olson (1999) Experimental electron transfer kinetics in DNA environment. Adv. Chem. Phys. 107, 647-676.
10. Tuite, E. (1998) Coordination complexes and nucleic acids, perspectives on electron transfer, binding mode, and cooperativity. In Organic and Inorganic Photochemistry, Vol. 2 (Edited by V. Ramamurthy and K. S. Schanze), pp. 55-74. Marcel Dekker, New York.
11. Lewis, F. D., R. L. Letsinger and M. R. Wasielewski (2001) Dynamics of photoinduced charge transfer and hole transport in synthetic DNA hairpins. Acc. Chem. Res. 34, 159-170.
12. Lewis, F. D., T. Wu, Y. Zhang, R. L. Letsinger, S. R. Greenfield and M. R. Wasielewski (1997) Distance-dependent electron transfer in DNA hairpins. Science 277, 673-676.
13. Lewis, F. D. and Y. Wu (2001) Dynamics of superexchange photoinduced electron transfer in duplex DNA. J. Photochem. Photobiol. C: Rev. 2, 1-16.
14. Letsinger, R. L. and T. Wu (1995) Use of a stilbenedicarbxoamide bridge in stabilizing, monitoring, and photochemically altering folded conformations of oligonucleotides. J. Am. Chem. Soc. 117, 7323-7328.
15. Lewis, F. D., Y. Wu and X. Liu (2002) Synthesis, structure, and photochemistry of exceptionally stable synthetic DNA hairpins with stilbene diether linkers. J. Am. Chem. Soc. 124, 12165-12173.
16. Lewis, F. D., X. Liu, Y. Wu, S. E. Miller, M. R. Wasielewski, R. L. Letsinger, R. Sanishvili, A. Joachimiak, V. Tereshko and M. Egli (1999) Structure and photoinduced electron transfer in exceptionally stable synthetic DNA hairpins with stilbenediether linkers. J. Am. Chem. Soc. 121, 9905-9906.
17. Egli, M., V. Tereshko, R. Mushudov, R. Sanishvili, X. Liu and F. D. Lewis (2003) Face-to-face and edge-to-face interactions in a synthetic DNA hairpins with a stilbenediether linker. J. Am. Chem. Soc. 125, 10842-10849.
18. Lewis, F. D., Y. Wu, L. Zhang, X. Zuo, R. T. Hayes and M. R. Wasielewski (2004) DNA-mediated exciton coupling and electrons transfer between donor and acceptor stilbenes separated by a variable number of base pairs. J. Am. Chem. Soc. 126, 8206-8215.
19. Lewis, F. D., X. Liu, Y. Wu and X. Zuo (2003) Stepwise evolution of the structure and electronic properties of DNA. J. Am. Chem. Soc. 125, 12729-12731.
20. Lewis, F. D., T. Wu, X. Liu, R. L. Letsinger, S. R. Greenfield, S. E. Miller and M. R. Wasielewski (2000) Dynamics of photoinduced charge separation and charge recombination in synthetic DNA hairpins with stilbenedicarboxamide linkers. J. Am. Chem. Soc. 122, 2889-2902.
21. Weller, A. (1982) Photoinduced electron transfer in solution: exciplex and radical ion pair formation free enthalpies and their solvent dependence. Z. Phys. Chem. Neue. Folg. 133, 93-98.
22. Seidel, C. A. M., A. Schulz and M. H. M. Sauer (1996) Nucleobase-specific quenching of fluorescent dyes. 1. Nucleobase one-electron redox potentials and their correlation with static and dynamic quenching efficiencies. J. Phys. Chem. 100, 5541-5553.
23. Winkler, J. R. and H. B. Gray (1992) Electron transfer in ruthenium-modified proteins. Chem. Rev. 92, 369-379.
24. Davis, W. B., W. A. Svec, M. A. Ratner and M. R. Wasielewski (1998) Molecular-wire behaviour in p-phenylenevinylene oligomers. Nature 396, 60-63.
25. Wan, C., T. Fiebig, O. Schiemann, J. K. Barton and A. H. Zewail (2000) Femtosecond direct observation of charge transfer between bases in DNA. Proc. Natl. Acad. Sci. USA 97, 14052-14055.
26. Fukui, K. and T. Tanaka (1998) Distance dependence of photoinduced electron transfer in DNA. Angew. Chem. Int. Ed. 37, 158-161.
27. Harriman, A. (1999) Electron tunneling in DNA. Angew. Chem. Int. Ed. 38, 945-949.
28. Hess, S., M. Götz, W. B. Davis and M. E. Michel-Beyerle (2001) On the apparently anomalous distance dependence of charge-transfer rates in 9-amino-6-chloro-2methoxyacridine-modified DNA. J. Am. Chem. Soc. 123, 10046-10055.
29. Lewis, F. D., R. S. Kalgutkar, Y. Wu, X. Liu, J. Liu, R. T. Hayes and M. R. Wasielewski (2000) Driving force dependence of glectron transfer dynamics in DNA. J. Am. Chem. Soc. 122, 12346-12351.
30. LeBard, D. N., M. Lilichenko, D. V. Matyushov, Y. A. Berlin and M. A. Ratner (2003) Solvent reorganization energy of charge transfer in DNA hairpins. J. Phys. Chem. B. 107, 14509-14520.
31. Lewis, F. D., J. Liu, W. Weigel, W. Rettig, I. V. Kurnikov and D. N. Beratan (2002) Donor-bridge-acceptor energetics determine the distance dependence of electron transfer in DNA. Proc. Natl. Acad. Sci. USA 99, 12536-12541.
32. Lewis, F. D. and M. R. Wasielewski (2004) Dynamics and equilibrium for single step hole transport processes in duplex DNA. Top. Curr. Chem. 236, 45-65.
33. Candeias, L. P. and S. Steenken (1989) Structure and acid-base properties of one-electron-oxidized deoxyguanosine, guanosine, and 1-methylguanosine. J. Am. Chem. Soc. 111, 1094-1099.
34. Berlin, Y. A., A. L. Burin and M. A. Ratner (2002) Elementary steps for charge transport in DNA: thermal activation vs. tunneling. Chem. Phys. 275, 61-74.
35. Lewis, F. D., X. Liu, S. E. Miller, R. T. Hayes and M. R. Wasielewski (2002) Dynamics of electron injection in DNA hairpins. J. Am. Chem. Soc. 124, 11280-11281.
36. Behrens, C., M. K. Cichon, F. Grolle, U. Hennecke and T. Carell (2004) Excess electron transfer in defined donor-nucleobase and donor-DNA-acceptor systems. Top. Curr. Chem. 236, 187-204.
37. Holmlin, R. E., P. J. Dandliker and J. K. Barton (1997) Charge transfer through the DNA base stack. Angew. Chem. Int. Ed. Engl. 36, 2714-2730.
38. Schuster, G. B. (2000) Long-range charge transfer in DNA: transient structural distortions control the distance dependence. Acc. Chem. Res. 33, 253-260.
39. Giese, B. (2004) Hole injection and hole transfer through DNA: the hopping mechanism. Top. Curr. Chem. 236, 27-44.
40. Schuster, G. B. and U. Landman (2004) The mechanism of long-distance radical cation transport in duplex DNA: ion-gated hopping of polaron-like distrotions. Top. Curr. Chem. 236, 139-161.
41. Hickerson, R. P., F. Prat, J. G. Muller, C. S. Foote and C. J. Burrows (1999) Sequence and stacking dependence of 8-oxoguanine oxidation: comparison of one-electron vs singlet oxygen mechanisms. J. Am. Chem. Soc. 121, 9423-9428.
42. Nakatani, K., K. Fujisawa, C. Dohno, T. Nakamura and I. Saito (1998) p-Cyano substituted 5-benzoyldeoxyuridine as a novel electron-accepting nucleobase for one-electron oxidation of DNA. Tetrahedron Lett. 39, 5995-5998.
43. Nakatani, K., C. Dohno and I. Saito (2000) Modulation of DNA-mediated hole-transport efficiency by changing superexchange electronic interaction. J. Am. Chem. Soc. 122, 5893-5894.
44. Shafirovich, V. Y., A. Dourandin, W. Huang, N. P. Luneva and N. E. Geacintov (2000) Electron transfer at a distance induced by site-selective photoionization of 2-aminopurine in oligonucleotides and investigated by transient absorption techniques. Phys. Chem. Chem. Phys. 2, 4399-4408.
45. Kawai, K., T. Takada, S. Tojo, N. Ichinose and T. Majima (2001) Observation of hole transfer through DNA by monitoring the transient absorption of pyrene radical cation. J. Am. Chem. Soc. 123, 12688-12689.
46. Nehira, T., C. A. Parish, S. Jockusch, N. J. Turro, K. Nakanishi and N. Berova (1999) Fluorescence-detected exciton-coupled circular dichroism: scope and limitation in structural studies of organic molecules. J. Am. Chem. Soc. 121, 8681-8691.
47. Yamazaki, I., N. Aratani, S. Akimoto, T. Yamazaki and A. Osuka (2003) Observation of quantum coherence for recurrence motion of exciton in anthracene dimers in solution. J. Am. Chem. Soc. 125, 7192-7193.