Face-to-face and edge-to-face π-π interactions in a synthetic DNA hairpin with a stilbenediether linker

Journal of the American Chemical Society

Volumn 125, Issue 36, 2003, Pages 10842-10849

  Egli, Martin ^a   Tereshko, Valentina ^a   Mushudov, Garib N ^b   Sanishvili, Ruslan ^c   Liu, Xiaoyang ^d   Lewis, Frederick D ^d  

^a VANDERBILT UNIVERSITY   (United States)

^b UNIVERSITY OF YORK   (United Kingdom)

^c ARGONNE NATIONAL LABORATORY   (United States)

^d NORTHWESTERN UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CONFORMATIONS; CRYSTAL STRUCTURE; ISOMERIZATION; PHOTOCHEMICAL REACTIONS;

SYNTHETIC CONJUGATES;

DNA;

BIS(2 HYDROXYETHYL)STILBENE 4,4' DIETHER; CYTOSINE; GUANINE; MAGNESIUM; PHENYL GROUP; STILBENE; STILBENE DERIVATIVE; SYNTHETIC DNA; UNCLASSIFIED DRUG;

ARTICLE; BASE PAIRING; CONJUGATE; CRYSTAL STRUCTURE; DNA CONFORMATION; DNA STRUCTURE; ISOMERISM; METAL BINDING; PHOTOCHEMISTRY;

CATIONS; CROSS-LINKING REAGENTS; DNA; ETHERS; MAGNESIUM; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; STILBENES;

EID: 0043236049     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja0355527     Document Type: Article

References (28)

1. Arnott, S. In Oxford Handbook of Nucleic Acid Structure; Neidle, S., Ed. ; Oxford University Press: Oxford, 1999; pp 1-38.
2. Bloomfield, V. A.; Crothers, D. M.; Tinoco, I., Jr. Nucleic Acids, Structures, Properties, Functions; University Science Books: Sausalito, CA, 2000.
3. Lewis, F. D.; Liu, X.; Wu, Y.; Miller, S. E.; Wasielewski, M. R.; Letsinger, R. L.; Sanishviii, R.; Joachimiak, A.; Tereshko, V.; Egli, M. J. Am. Chem. Soc. 1999, 121, 9905-9906.
4. Hunter, C. A. Chem. Rev. 1994, 23, 101-110.
5. Sinnokrot, M. O.; Valeev, E. F.; Sherrill, C. D. J. Am. Chem. Soc. 2002, 124, 10887-10893.
6. Bevers, S.; Schutte, S.; McLaughlin, L. M. J. Am. Chem. Soc. 2000, 122, 5905-5915.
7. Ma, M. Y. X.; McCallum, K.; Climie, S. C.; Kuperman, R.; Lin, W. C.; Sumner-Smith, M.; Barnett, R. W. Nucleic Acids Res. 1993, 21, 2585-2589.
8. Salunkhe, M.; Wu, T.; Letsinger, R. L. J. Am. Chem. Soc. 1992, 114, 8768-8772.
9. Durand, M.; Chevrie, K.; Chassignol, M.; Thuong, N. T.; Maurizot, J. C. Nucleic Acids Res. 1990, 18, 6353-6359.
10. Letsinger, R. L.; Wu, T. J. Am. Chem. Soc. 1995, 117, 7323-7328.
11. Lewis, F. D.; Wu, Y.; Liu, X. J. Am. Chem. Soc. 2002, 124, 12165-12173.
12. Otwinowski, Z.; Minor, W. Methods Enzymol. 1997, 276, 307-326.
13. Navaza, J. Acta Crystallogr., Sect. A 1994, 50, 157-163.
14. Brünger, A. T.; Adams, P. D.; Clore, G. M.; DeLano, W. L.; Gros, P. ; Grosse-Kunstleve, R. W.; Jiang, J. S.; Kuszewski, J.; Nilges, M.; Pannu, N. S.; Read, R. J.; Rice, L. M.; Simonson, T.; Warren, G. L. Acta Crystallogr., Sect. D 1998, 54, 905-921.
15. Mushudov, G. N.; Vagin, A. A.; Dodson, E. J. Acta Crystallogr., Sect. D 1997, 53, 240-255.
16. Brünger, A. T. Nature 1992, 355, 472-475.
17. (a) Lavery, R.; Sklenar, H. J. Biomol. Struct. Dyn. 1988, 6, 63-91.
18. (b) Lavery, R.; Sklenar, H. J. Biomol. Struct. Dyn. 1989, 7, 655-667.
19. Lewis, F. D.; Yang, J.-S.; Stern, C. L. J. Am. Chem. Soc. 1996, 118, 12029-12037.
20. Ogawa, K.; Sano, T.; Yoshimura, S.; Takeuchi, Y.; Toriumi, K. J. Am. Chem. Soc. 1992, 114, 1041-1051.
21. Waldeck Chem. Rev. 1991, 91, 415-536.
22. Egli, M.; Gessner, R. V. Proc. Natl. Acad. Sci. U.S.A. 1995, 92, 180-185.
23. Egli, M.; Tereshko, V. In Sequence-Dependent Curvature and Deformation in Nucleic Acids and Protein-Nucleic Acid Complexes: Stellwagen, N., Mohanty, U., Eds.; American Chemical Society Symposium Series; 2003. In press.
24. Egli, M. Chem. Biol. 2002, 9, 277-286.
25. Hud, N. V.; Feigon, J. J. Am. Chem. Soc. 1997, 119, 5756-5757.
26. Minasov, G.; Tereshko, V.; Egli, M. J. Mol. Biol. 1999, 291, 83-99.
27. Tereshko, V.; Minasov, G.; Egli, M. J. Am. Chem. Soc. 1999, 121, 3590-3595.
28. Hud, N. V.; Sklenar V.; Feigon, J. J. Mol. Biol. 1999, 286, 651-660.