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Volumn 29, Issue 4, 2004, Pages 282-289

Quantitative detection of human immunodeficiency virus type 1 (HIV-1) proviral DNA in peripheral blood mononuclear cells by SYBR green real-time PCR technique

Author keywords

HIV 1 proviral DNA; Real time PCR; SYBR Green

Indexed keywords

ANTIRETROVIRUS AGENT; GREEN FLUORESCENT PROTEIN; RNA; VIRUS DNA;

EID: 1442286420     PISSN: 13866532     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1386-6532(03)00169-0     Document Type: Article
Times cited : (89)

References (42)
  • 1
    • 0025298979 scopus 로고
    • Simple, sensitive, and specific detection of human immunodeficiency virus type 1 in clinical specimens by polymerase chain reaction with nested primers
    • Albert J., Fenyo E.M. Simple, sensitive, and specific detection of human immunodeficiency virus type 1 in clinical specimens by polymerase chain reaction with nested primers. J. Clin. Microbiol. 28:1990;1560-1564.
    • (1990) J. Clin. Microbiol. , vol.28 , pp. 1560-1564
    • Albert, J.1    Fenyo, E.M.2
  • 2
    • 0036194694 scopus 로고    scopus 로고
    • Rapid detection of herpes simplex virus DNA in genital ulcers by real-time PCR using SYBR green I dye as the detection signal
    • Aldea C., Alvarez C.P., Folgueira L., Delgado R., Otero J.R. Rapid detection of herpes simplex virus DNA in genital ulcers by real-time PCR using SYBR green I dye as the detection signal. J. Clin. Microbiol. 40:2002;1060-1062.
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 1060-1062
    • Aldea, C.1    Alvarez, C.P.2    Folgueira, L.3    Delgado, R.4    Otero, J.R.5
  • 3
    • 0027437293 scopus 로고
    • High percentages of CD4-positive lymphocytes harbor the HIV-1 provirus in the blood of certain infected individuals
    • Bagasra O., Seshamma T., Oakes J.W., Pomerantz R.J. High percentages of CD4-positive lymphocytes harbor the HIV-1 provirus in the blood of certain infected individuals. AIDS. 7:1993;1419-1425.
    • (1993) AIDS , vol.7 , pp. 1419-1425
    • Bagasra, O.1    Seshamma, T.2    Oakes, J.W.3    Pomerantz, R.J.4
  • 4
    • 0032894649 scopus 로고    scopus 로고
    • Fluorescence melting curve-based analysis for the detection of the bcl-1/JH translocation in mantle cell lymphoma
    • Bay S., Wittwer C.T., King T.C., Elelitoba-Johnson K.S.J. Fluorescence melting curve-based analysis for the detection of the bcl-1/JH translocation in mantle cell lymphoma. Lab. Invest. 79:1999;337-345.
    • (1999) Lab. Invest. , vol.79 , pp. 337-345
    • Bay, S.1    Wittwer, C.T.2    King, T.C.3    Elelitoba-Johnson, K.S.J.4
  • 5
    • 1442318336 scopus 로고    scopus 로고
    • Development of PCR-based assays for the detection of chromosomal translocations using SYBR Green I
    • Meuer S, Wittwer C, Nakagawara K, editors. Berlin: Springer-Verlag;
    • Bohling SD, Elelitoba-Johnson KSJ. Development of PCR-based assays for the detection of chromosomal translocations using SYBR Green I. In: Meuer S, Wittwer C, Nakagawara K, editors. Rapid cycle real-time PCR: methods and applications. Berlin: Springer-Verlag; 2001. p. 231-9.
    • (2001) Rapid Cycle Real-time PCR: Methods and Applications , pp. 231-239
    • Bohling, S.D.1    Elelitoba-Johnson, K.S.J.2
  • 6
    • 0030764022 scopus 로고    scopus 로고
    • HIV-1 viral load, phenotype, and resistance in a subset of drug-naive participants from the Delta trial. The National Virology Groups. Delta Virology Working Group and Coordinating Committee
    • Brun-Vezinet F., Boucher C., Loveday C.et al. HIV-1 viral load, phenotype, and resistance in a subset of drug-naive participants from the Delta trial. The National Virology Groups. Delta Virology Working Group and Coordinating Committee. Lancet. 350:1997;983-990.
    • (1997) Lancet , vol.350 , pp. 983-990
    • Brun-Vezinet, F.1    Boucher, C.2    Loveday, C.3
  • 7
    • 0033980093 scopus 로고    scopus 로고
    • PCR-based assay to quantify human immunodeficiency virus type 1 DNA in peripheral blood mononuclear cells
    • Christopherson C., Kidane Y., Conway B., Krowka J., Sheppard H., Kwok S. PCR-based assay to quantify human immunodeficiency virus type 1 DNA in peripheral blood mononuclear cells. J. Clin. Microbiol. 38:2000;630-634.
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 630-634
    • Christopherson, C.1    Kidane, Y.2    Conway, B.3    Krowka, J.4    Sheppard, H.5    Kwok, S.6
  • 8
    • 0030659177 scopus 로고    scopus 로고
    • Presence of an inducible HIV-1 latent reservoir during highly active antiretroviral therapy
    • Chun T.W., Stuyver L., Mizell S.B.et al. Presence of an inducible HIV-1 latent reservoir during highly active antiretroviral therapy. Proc. Natl. Acad. Sci. U.S.A. 94:1997;13193-13207.
    • (1997) Proc. Natl. Acad. Sci. U.S.A. , vol.94 , pp. 13193-13207
    • Chun, T.W.1    Stuyver, L.2    Mizell, S.B.3
  • 9
    • 0032555117 scopus 로고    scopus 로고
    • Early establishment of a pool of latently infected, resting CD4(+) T cells during primary HIV-1 infection
    • Chun T.W., Engel D., Berrey M.M., Shea T., Corey L., Fauci A.S. Early establishment of a pool of latently infected, resting CD4(+) T cells during primary HIV-1 infection. Proc. Natl. Acad. Sci. U.S.A. 95:1998;8869-8873.
    • (1998) Proc. Natl. Acad. Sci. U.S.A. , vol.95 , pp. 8869-8873
    • Chun, T.W.1    Engel, D.2    Berrey, M.M.3    Shea, T.4    Corey, L.5    Fauci, A.S.6
  • 10
    • 0029913372 scopus 로고    scopus 로고
    • Clinical use of quantitative molecular methods in studying human immunodeficiency virus type 1 infection
    • Clementi M., Menzo S., Bagnarelli P.et al. Clinical use of quantitative molecular methods in studying human immunodeficiency virus type 1 infection. Clin. Microbiol. Rev. 9:1996;135-147.
    • (1996) Clin. Microbiol. Rev. , vol.9 , pp. 135-147
    • Clementi, M.1    Menzo, S.2    Bagnarelli, P.3
  • 11
    • 0006531594 scopus 로고    scopus 로고
    • Quantification of HIV-1 proviral DNA from peripheral blood mononuclear cells using a high throughput four-competitor competitive PCR
    • Comandini U.V., Sonnerborg A., Vahlne A., Yun Z. Quantification of HIV-1 proviral DNA from peripheral blood mononuclear cells using a high throughput four-competitor competitive PCR. J. Virol. Methods. 69:1997;171-180.
    • (1997) J. Virol. Methods , vol.69 , pp. 171-180
    • Comandini, U.V.1    Sonnerborg, A.2    Vahlne, A.3    Yun, Z.4
  • 12
    • 0029808412 scopus 로고    scopus 로고
    • Comparative evaluation of three assays for the quantitation of human immunodeficiency virus type 1 RNA in plasma
    • Coste J., Montes B., Reynes J.et al. Comparative evaluation of three assays for the quantitation of human immunodeficiency virus type 1 RNA in plasma. J. Med. Virol. 50:1996;293-302.
    • (1996) J. Med. Virol. , vol.50 , pp. 293-302
    • Coste, J.1    Montes, B.2    Reynes, J.3
  • 13
    • 0035205593 scopus 로고    scopus 로고
    • Quantification of proviral load of human immunodeficiency virus type 2 subtypes a and B using real-time PCR
    • Damond F., Descamps D., Farfara I.et al. Quantification of proviral load of human immunodeficiency virus type 2 subtypes A and B using real-time PCR. J. Clin. Microbiol. 39:2001;4264-4268.
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 4264-4268
    • Damond, F.1    Descamps, D.2    Farfara, I.3
  • 14
    • 0035059676 scopus 로고    scopus 로고
    • Quantification of human immunodeficiency virus type 1 proviral load by a TaqMan real-time PCR assay
    • Desire N., Dehee A., Schneider V.et al. Quantification of human immunodeficiency virus type 1 proviral load by a TaqMan real-time PCR assay. J. Clin. Microbiol. 39:2001;1303-1310.
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 1303-1310
    • Desire, N.1    Dehee, A.2    Schneider, V.3
  • 15
    • 0026483850 scopus 로고
    • Relevance of the quantitative detection of HIV proviral sequences in PBMC of infected individuals
    • Eschaich S., Ritter J., Rougier P.et al. Relevance of the quantitative detection of HIV proviral sequences in PBMC of infected individuals. AIDS Res. Hum. Retrovir. 8:1992;1833-1837.
    • (1992) AIDS Res. Hum. Retrovir. , vol.8 , pp. 1833-1837
    • Eschaich, S.1    Ritter, J.2    Rougier, P.3
  • 16
    • 0033876202 scopus 로고    scopus 로고
    • Evaluation of LightCycler PCR for implementation of laboratory diagnosis of herpes simplex virus infections
    • Espy M.J., Uhl R., Mitchell P.S.et al. Evaluation of LightCycler PCR for implementation of laboratory diagnosis of herpes simplex virus infections. J. Clin. Microbiol. 38:2000;3116-3118.
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 3116-3118
    • Espy, M.J.1    Uhl, R.2    Mitchell, P.S.3
  • 17
    • 0032953920 scopus 로고    scopus 로고
    • Latent infection of CD4+ T cells provides a mechanism for lifelong persistence of HIV-1, even in patients on effective combination therapy
    • Finzi D., Blankson J., Siliciano J.D.et al. Latent infection of CD4+ T cells provides a mechanism for lifelong persistence of HIV-1, even in patients on effective combination therapy. Nat. Med. 5:1999;512-517.
    • (1999) Nat. Med. , vol.5 , pp. 512-517
    • Finzi, D.1    Blankson, J.2    Siliciano, J.D.3
  • 18
    • 0022452221 scopus 로고
    • Biological and biochemical characterization of a cloned Leu-3-cell surviving infection with the acquired immune deficiency syndrome retrovirus
    • Folks T.M., Powell D., Lightfoote M.et al. Biological and biochemical characterization of a cloned Leu-3-cell surviving infection with the acquired immune deficiency syndrome retrovirus. J. Exp. Med. 164:1986;280-290.
    • (1986) J. Exp. Med. , vol.164 , pp. 280-290
    • Folks, T.M.1    Powell, D.2    Lightfoote, M.3
  • 19
    • 0030802105 scopus 로고    scopus 로고
    • Quantification of HIV-1 viral RNA and proviral DNA by isotopic competitive PCR
    • Gratzl S., Moroni C., Hirsch H.H. Quantification of HIV-1 viral RNA and proviral DNA by isotopic competitive PCR. J. Virol. Methods. 66:1997;269-282.
    • (1997) J. Virol. Methods , vol.66 , pp. 269-282
    • Gratzl, S.1    Moroni, C.2    Hirsch, H.H.3
  • 20
    • 0442268112 scopus 로고    scopus 로고
    • A controlled trial of two nucleoside analogues plus indinavir in persons with human immunodeficiency virus infection and CD4 cell counts of 200 per cubic millimeter or less. AIDS Clinical Trials Group 320 Study Team
    • Hammer S.M., Squires K.E., Hughes M.D.et al. A controlled trial of two nucleoside analogues plus indinavir in persons with human immunodeficiency virus infection and CD4 cell counts of 200 per cubic millimeter or less. AIDS Clinical Trials Group 320 Study Team. N. Engl. J. Med. 337:1997;725-733.
    • (1997) N. Engl. J. Med. , vol.337 , pp. 725-733
    • Hammer, S.M.1    Squires, K.E.2    Hughes, M.D.3
  • 22
    • 0029160211 scopus 로고
    • SYBR green I DNA staining increases the detection sensitivity of viruses by polymerase chain reaction
    • Karlsen F., Steen H.B., Nesland J.M. SYBR green I DNA staining increases the detection sensitivity of viruses by polymerase chain reaction. J. Virol. Methods. 55:1995;153-156.
    • (1995) J. Virol. Methods , vol.55 , pp. 153-156
    • Karlsen, F.1    Steen, H.B.2    Nesland, J.M.3
  • 23
    • 0010552565 scopus 로고
    • Non-radioactive labelling and detection of nucleic acid probes
    • Hames BD, Higgins SJ, editors. New York, NY: IRL Press;
    • Kessler C. Non-radioactive labelling and detection of nucleic acid probes. In: Hames BD, Higgins SJ, editors. Gene probes 1: a practical approach. New York, NY: IRL Press; 1995. p. 93-140.
    • (1995) Gene Probes 1: A Practical Approach , pp. 93-140
    • Kessler, C.1
  • 24
    • 0028980537 scopus 로고
    • Clinical evaluation of Amplicor HIV-1 test for detection of HIV-1 proviral DNA in peripheral mononuclear cells
    • Khadir A., Coutlee F., Saint-Antoine P.et al. Clinical evaluation of Amplicor HIV-1 test for detection of HIV-1 proviral DNA in peripheral mononuclear cells. J. AIDS. 9:1995;257-263.
    • (1995) J. AIDS , vol.9 , pp. 257-263
    • Khadir, A.1    Coutlee, F.2    Saint-Antoine, P.3
  • 25
    • 0026968723 scopus 로고
    • In situ hybridization in suspension and flow cytometry as a tool for the study of gene expression
    • Lalli E., Gibellini D., Santi S., Facchini A. In situ hybridization in suspension and flow cytometry as a tool for the study of gene expression. Anal. Biochem. 207:1992;298-303.
    • (1992) Anal. Biochem. , vol.207 , pp. 298-303
    • Lalli, E.1    Gibellini, D.2    Santi, S.3    Facchini, A.4
  • 26
    • 0033031005 scopus 로고    scopus 로고
    • Use of real-time PCR and molecular beacons to detect virus replication in human immunodeficiency virus type 1-infected individuals on prolonged effective antiretroviral therapy
    • Lewin S.R., Vesanen M., Kostrikis L.et al. Use of real-time PCR and molecular beacons to detect virus replication in human immunodeficiency virus type 1-infected individuals on prolonged effective antiretroviral therapy. J. Virol. 73:1999;6099-7103.
    • (1999) J. Virol. , vol.73 , pp. 6099-7103
    • Lewin, S.R.1    Vesanen, M.2    Kostrikis, L.3
  • 27
    • 0030026309 scopus 로고    scopus 로고
    • Application of a commercial kit for detection of PCR products to quantification of human immunodeficiency virus type 1 RNA and proviral DNA
    • Lin H.J., Haywood M., Hollinger F.B. Application of a commercial kit for detection of PCR products to quantification of human immunodeficiency virus type 1 RNA and proviral DNA. J. Clin. Microbiol. 34:1996;329-333.
    • (1996) J. Clin. Microbiol. , vol.34 , pp. 329-333
    • Lin, H.J.1    Haywood, M.2    Hollinger, F.B.3
  • 28
    • 0033027958 scopus 로고    scopus 로고
    • Level of HIV DNA in peripheral blood mononuclear cells correlates with efficacy of antiretroviral therapy
    • McDermott J.L., Giri A.A., Martini I., Bono M., Giacomini M., Campelli A.et al. Level of HIV DNA in peripheral blood mononuclear cells correlates with efficacy of antiretroviral therapy. J. Clin. Microbiol. 37:1999;2361-2365.
    • (1999) J. Clin. Microbiol. , vol.37 , pp. 2361-2365
    • McDermott, J.L.1    Giri, A.A.2    Martini, I.3    Bono, M.4    Giacomini, M.5    Campelli, A.6
  • 30
    • 0032091098 scopus 로고    scopus 로고
    • Quantification of low-copy transcripts by continuous SYBR Green I monitoring during amplification
    • Morrison T.B., Weis J.J., Wittwer C.T. Quantification of low-copy transcripts by continuous SYBR Green I monitoring during amplification. Biotechniques. 24:1998;954-958.
    • (1998) Biotechniques , vol.24 , pp. 954-958
    • Morrison, T.B.1    Weis, J.J.2    Wittwer, C.T.3
  • 31
    • 0032993875 scopus 로고    scopus 로고
    • Rapid and sensitive quantification of Borrelia burgdorferi-infected mouse tissues by continuous fluorescent monitoring of PCR
    • Morrison T.B., Ma Y., Weis J.H., Weis J.J. Rapid and sensitive quantification of Borrelia burgdorferi-infected mouse tissues by continuous fluorescent monitoring of PCR. J. Clin. Microbiol. 37:1999;987-992.
    • (1999) J. Clin. Microbiol. , vol.37 , pp. 987-992
    • Morrison, T.B.1    Ma, Y.2    Weis, J.H.3    Weis, J.J.4
  • 32
    • 0033034283 scopus 로고    scopus 로고
    • Reproducibility and performance of the second-generation branched-DNA assay in routine quantification of human immunodeficiency virus type 1 RNA in plasma
    • Murphy D.G., Gonin P., Fauvel M. Reproducibility and performance of the second-generation branched-DNA assay in routine quantification of human immunodeficiency virus type 1 RNA in plasma. J. Clin. Microbiol. 37:1999;812-814.
    • (1999) J. Clin. Microbiol. , vol.37 , pp. 812-814
    • Murphy, D.G.1    Gonin, P.2    Fauvel, M.3
  • 33
    • 0029967721 scopus 로고    scopus 로고
    • HIV-1 dynamics in vivo: Virion clearance rate, infected cell life-span, and viral generation time
    • Perelson A.S., Neuman A.U., Markowitz M., Leonard J.M., Ho D.D. HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time. Science. 271:1996;1582-1586.
    • (1996) Science , vol.271 , pp. 1582-1586
    • Perelson, A.S.1    Neuman, A.U.2    Markowitz, M.3    Leonard, J.M.4    Ho, D.D.5
  • 34
    • 0344269954 scopus 로고    scopus 로고
    • Immunophenotyping and assessment of cell function by three-color flow cytometry of peripheral blood lymphocytes
    • Michael N, Kim JH, editors. Totowa, NJ: Humana Press;
    • Perfetto SP, McCrary G. Immunophenotyping and assessment of cell function by three-color flow cytometry of peripheral blood lymphocytes. In: Michael N, Kim JH, editors. HIV protocols. Totowa, NJ: Humana Press; 1999. p. 397-407.
    • (1999) HIV Protocols , pp. 397-407
    • Perfetto, S.P.1    McCrary, G.2
  • 35
    • 0032811568 scopus 로고    scopus 로고
    • Long-term evaluation of triple nucleoside therapy administered from primary HIV-1 infection
    • Poggi C., Profizi N., Djediouane A., Chollet L., Hittinger G., Lafeuillade A. Long-term evaluation of triple nucleoside therapy administered from primary HIV-1 infection. AIDS. 13:1999;1213-1220.
    • (1999) AIDS , vol.13 , pp. 1213-1220
    • Poggi, C.1    Profizi, N.2    Djediouane, A.3    Chollet, L.4    Hittinger, G.5    Lafeuillade, A.6
  • 36
    • 0027966120 scopus 로고
    • Quantification of human immunodeficiency virus type 1-infected mononuclear cells in peripheral blood of seropositive subjects by newly developed flow cytometry analysis of the product of an in situ PCR assay
    • Re M.C., Furlini G., Gibellini D.et al. Quantification of human immunodeficiency virus type 1-infected mononuclear cells in peripheral blood of seropositive subjects by newly developed flow cytometry analysis of the product of an in situ PCR assay. J. Clin. Microbiol. 32:1994;2152-2157.
    • (1994) J. Clin. Microbiol. , vol.32 , pp. 2152-2157
    • Re, M.C.1    Furlini, G.2    Gibellini, D.3
  • 38
    • 0030712305 scopus 로고    scopus 로고
    • Recovery of replication-competent HIV despite prolonged suppression of plasma viremia
    • Wong J.K., Hezareh M., Gunthard H.F., Havlir D.V., Ignacio C.C., Spina C.A.et al. Recovery of replication-competent HIV despite prolonged suppression of plasma viremia. Science. 278:1997a;1291-1295.
    • (1997) Science , vol.278 , pp. 1291-1295
    • Wong, J.K.1    Hezareh, M.2    Gunthard, H.F.3    Havlir, D.V.4    Ignacio, C.C.5    Spina, C.A.6
  • 39
    • 0030730288 scopus 로고    scopus 로고
    • Reduction of HIV-1 in blood and lymph nodes following potent antiretroviral therapy and the virologic correlates of treatment failure
    • Wong J.K., Gunthard H.F., Havlir D.V.et al. Reduction of HIV-1 in blood and lymph nodes following potent antiretroviral therapy and the virologic correlates of treatment failure. Proc. Natl. Acad. Sci. U.S.A. 94:1997b;12574-12579.
    • (1997) Proc. Natl. Acad. Sci. U.S.A. , vol.94 , pp. 12574-12579
    • Wong, J.K.1    Gunthard, H.F.2    Havlir, D.V.3
  • 40
    • 0034981828 scopus 로고    scopus 로고
    • Diagnosis of HIV infection and laboratory monitoring of its therapy
    • Yilmaz G. Diagnosis of HIV infection and laboratory monitoring of its therapy. J. Clin. Virol. 21:2001;187-196.
    • (2001) J. Clin. Virol. , vol.21 , pp. 187-196
    • Yilmaz, G.1
  • 41
    • 0026492898 scopus 로고
    • Nested polymerase chain reaction for detection of Human immunodeficiency virus type 1 DNA in clinical specimens
    • Zazzi M., Romano L., Brasini A., Valensin P.E. Nested polymerase chain reaction for detection of Human immunodeficiency virus type 1 DNA in clinical specimens. J. Med. Virol. 38:1992;172-174.
    • (1992) J. Med. Virol. , vol.38 , pp. 172-174
    • Zazzi, M.1    Romano, L.2    Brasini, A.3    Valensin, P.E.4
  • 42
    • 0036162182 scopus 로고    scopus 로고
    • Quantification of human immunodeficiency virus type 1 proviral DNA by using TaqMan technology
    • Zhao Y., Yu M., Miller J.W., Chen M., Bremer E.G., Kabat W.et al. Quantification of human immunodeficiency virus type 1 proviral DNA by using TaqMan technology. J. Clin. Microbiol. 40:2002;675-678.
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 675-678
    • Zhao, Y.1    Yu, M.2    Miller, J.W.3    Chen, M.4    Bremer, E.G.5    Kabat, W.6


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