Isolation and chromosomal assignment of canine genomic BAC clones representing 25 cancer-related genes

Cytogenetic and Genome Research

Volumn 102, Issue 1-4, 2003, Pages 249-253

  Thomas, R ^a,b   Bridge, W ^a   Benke, K ^a   Breen, M ^a,b  

^a ANIMAL HEALTH TRUST   (United Kingdom)

^b NORTH CAROLINA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CANCER GENETICS; CARCINOGENESIS; CHROMOSOME ABERRATION; CLONE; CONTROLLED STUDY; CORRELATION FUNCTION; DISEASE COURSE; DNA SEQUENCE; DOMESTIC ANIMAL; FLUORESCENCE IN SITU HYBRIDIZATION; GENE ASSIGNMENT; GENE FUNCTION; GENE ISOLATION; GENE LIBRARY; GENE LOCATION; GENE MAPPING; GENETIC HETEROGENEITY; GENETIC SCREENING; GENOME; GENOMICS; KARYOTYPE; MARKER GENE; METAPHASE; NONHUMAN; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SYNTENY;

ANIMALS; CATS; CHROMOSOME MAPPING; CHROMOSOMES; CHROMOSOMES, ARTIFICIAL, BACTERIAL; CLONING, MOLECULAR; DOGS; GENES, NEOPLASM; GENETIC MARKERS; GENOME; HORSES; HUMANS; MOLECULAR SEQUENCE DATA; SWINE;

CANIS FAMILIARIS; CANIS LUPUS;

EID: 1442274725     PISSN: 14248581     EISSN: None     Source Type: Journal    
DOI: 10.1159/000075757     Document Type: Article

References (25)

1. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ:"Gapped BLAST and PSI-BLAST: a new generation of protein database search programs". Nucl Acids Res 25:3389-3402 (1997).
2. Breen M, Thomas R, Binns MM, Carter NP, Langford CF: Reciprocal chromosome painting reveals detailed regions of conserved synteny between the karyotypes of the domestic dog (Canis familiaris) and human. Genomics 61: 145-155 (1999a).
3. Breen M, Bullerdiek J, Langford CF: The DAPI banded karyotype of the domestic dog (Canis familiaris) generated using chromosome-specific paint probes. Chrom Res 7:401.406 (1999b). Published erratum appears in Chrom Res 7:575 (1999).
4. Breen M, Jouquand S, Renier C, Mellersh CS, Hitte C, Holmes NG, Cheron A, Suter N, Vignaux F, Bristow AE, Priat C, McCann E, Andre C, Boundy S, Gitsham P, Thomas R, Bridge WL, Spriggs HF, Ryder EJ, Curson A, Sampson J, Ostrander EA, Binns MM, Galibert F: Chromosome-specific single locus FISH probes allow anchorage of an 1,800 marker integrated radiation-hybrid/linkage map of the domestic dog (Canis familiaris) genome to all chromosomes. Genome Res 11:1784-1795 (2001).
5. Deloukas P, Schuler G, Gyapay G, Beasley E, Soderlund C, Rodriguez-Tome P, Hui L, Matise T, McKusick K, Beckmann, J: A physical map of 30,000 human genes. Science 282:744-746 (1998).
6. Dunn KA, Thomas R, Binns MM, Breen M: Comparative genomic hybridisation (CGH) in dogs - application to the study of a canine glial tumour cell line. Vet J 160:77-82 (2000).
7. Guyon R, Lorentzen TD, Hitte C, Kim L, Cadieu E, Parker HG, Quignon P, Lowe JK, Renier C, Gelfenbeyn B, Vignaux F, DeFrance HB, Gloux S, Mahairas GG, Andre C, Galibert F, Ostrander EA: A 1 Mb resolution radiation hybrid map of the canine genome. Proc natl Acad Sci, 100:5296-5301 (2003).
8. Jonasdottir TJ, Mellersh CS, Moe L, Vignaux F, Ostrander EA, Lingaas F: Chromosomal assignment of canine TSC2, PKD1 and CLN3 genes by radiation hybrid- and linkage analyses. Anim Genet 2:123-126 (2000).
9. Krempler A, Breen M, Brenig B: Assignment of the canine paired-box 3 (PAX3) gene to chromosome 37q16→q17 by in situ hybridization. Cytogenet Cell Genet 90:66-67 (2000).
10. Langford CF, Fischer PE, Binns MM, Holmes NG, Carter NP: Chromosome-specific paints from a high-resolution flow karyotype of the dog. Chrom Res 4:115-123 (1996).
11. Li R, Mignot E, Faraco J, Kodatani H, Cantanese JJ, Zhao BH, Lin X, Hinton L, Ostrander EA, Patterson DF, de Jong PJ: Construction and characterisation of an eightfold redundant dog genomic bacterial artificial chromosome library. Genomics 58:9-17 (1999).
12. Lyons LA, Laughlin TF, Copeland NG, Jenkins NA, Womack JE, O'Brien SJ: Comparative anchor tagged sequences (CATS) for integrative mapping of mammalian genomes. Nature Genet 15:47-56 (1997).
13. Mayr B, Reifinger M, Brem G, Feil C, Schleger W: Cytogenetic, ras, and p53: studies in cases of canine neoplasms (hemangiopericytoma, mastocytoma, histiocytoma, chloroma). J Hered 90:124-128 (1999).
14. Murua Escobar H, Becker K, Bullerdiek J, Nolte I: The canine ERBB2 gene maps to a chromosome region frequently affected by aberrations in tumours of the dog (Canis familiaris). Cytogenet Cell Genet 94:194-195 (2001).
15. Parker HG, Yuhua X, Mellersh CS, Khan S, Shibuya H, Johnson GS, Ostrander EA: Meiotic linkage mapping of 52 genes onto the canine map does not identify significant levels of microrearrangement. Mammal Genome 12:713-718 (2001).
16. Sargan DR, Yang F, Squire M, Milne BS, O'Brien PC, Ferguson-Smith MA: Use of flow-sorted canine chromosomes in the assignment of canine linkage, radiation hybrid, and syntenic groups to chromosomes: Refinement and verification of the comparative chromosome map for dog and human. Genomics 69:182-195 (2000).
17. Thomas R, Breen M, Langford CF, Binns MM: Zoo-FISH analysis of dog chromosome 5: Identification of conserved synteny with human and cat chromosomes. Cytogenet Cell Genet 87:4-10 (1999).
18. Thomas R, Smith KC, Gould R, Gower SM, Binns MM, Breen M: Molecular cytogenetic analysis of a novel high-grade canine T-lymphoblastic lymphoma demonstrating co-expression of CD3 and CD79a cell markers. Chrom Res 9:649-657 (2001a).
19. Thomas R, Breen M, Binns MM: Chromosome assignment of six dog gene markers by FISH, and correlation with dog-human Zoo-FISH data. Anim Genet 32:148-151 (2001b).
20. Thomas R, Breen M, Deloukas P, Holmes NG, Binns MM: An integrated physical, comparative and radiation-hybrid map of dog chromosome five. Mammal Genome 12:371-375 (2001c).
21. Thomas R, Fiegler H, Ostrander EA, Galibert F, Carter NP Breen M: A canine cancer-gene microarray for CGH analysis of tumors. Cytogenet Genome Res 102:254-260 (2003).
22. Thomas R, Smith KC, Ostrander EA, Galibert F, Breen M: Detection of recurrent chromosome aberrations in 25 canine lymphomas using comparative genomic hybridisation. Brit J Cancer 89:1530-1537 (2003).
23. Venta PJ, Brouillette JA, Yuzbasiyan-Gurkan V, Brewer GJ: Gene-specific universal mammalian sequence-tagged sites: application to the canine genome. Biochem Genet 34:321-341 (1996).
24. Werner P, Raducha MG, Prociuk U, Henthorn PS, Patterson DF: Physical and linkage mapping of human chromosome 17 loci to dog chromosomes 9 and 5. Genomics 42:74-82 (1997).
25. Yang F, O'Brien PCM, Milne BS, Graphodatsky AS, Solanky N, Trifonov V, Rens W, Sargan D, Ferguson-Smith MA: A complete comparative chromosome map for the dog, red fox, and human and its integration with canine genetic maps. Genomics 62:189-202 (1999).