-
1
-
-
0027313673
-
Pathways of protein folding
-
Matthews, C. R. (1993) Pathways of protein folding, Annu. Rev. Biochem. 62, 653-683.
-
(1993)
Annu. Rev. Biochem.
, vol.62
, pp. 653-683
-
-
Matthews, C.R.1
-
2
-
-
0029124248
-
Molten globule and protein folding
-
Ptitsyn, O. B. (1995) Molten globule and protein folding, Adv. Protein Chem. 47, 83-229.
-
(1995)
Adv. Protein Chem.
, vol.47
, pp. 83-229
-
-
Ptitsyn, O.B.1
-
3
-
-
0029151158
-
Submillisecond folding of monomeric lambda repressor
-
Huang, G. S., and Oas, T. G. (1995) Submillisecond folding of monomeric lambda repressor, Proc. Natl. Acad. Sci. U.S.A. 92, 6878-6882.
-
(1995)
Proc. Natl. Acad. Sci. U.S.A.
, vol.92
, pp. 6878-6882
-
-
Huang, G.S.1
Oas, T.G.2
-
4
-
-
0029049321
-
Extremely rapid protein folding in the absence of intermediates
-
Schindler, T., Herrler, M., Marahiel, M. A., and Schmid, F. X. (1995) Extremely rapid protein folding in the absence of intermediates, Nat. Struct. Biol. 2, 663-673.
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 663-673
-
-
Schindler, T.1
Herrler, M.2
Marahiel, M.A.3
Schmid, F.X.4
-
5
-
-
0031890195
-
Conservation of rapid two-state folding in mesophilic, thermophilic and hyperthermophilic cold shock proteins
-
Perl, D., Welker, C., Schindler, T., Schröder, K., Marahiel, M. A., Jaenicke, R., and Schmid, F. X. (1998) Conservation of rapid two-state folding in mesophilic, thermophilic and hyperthermophilic cold shock proteins, Nat. Struct. Biol. 5, 229-235.
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 229-235
-
-
Perl, D.1
Welker, C.2
Schindler, T.3
Schröder, K.4
Marahiel, M.A.5
Jaenicke, R.6
Schmid, F.X.7
-
6
-
-
0032979289
-
Extremely rapid folding of the c-terminal domain of the prion protein without kinetic intermediates
-
Wildegger, G., Liemann, S., and Glockshuber, R. (1999) Extremely rapid folding of the c-terminal domain of the prion protein without kinetic intermediates, Nat. Struct. Biol. 6, 550-553.
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 550-553
-
-
Wildegger, G.1
Liemann, S.2
Glockshuber, R.3
-
7
-
-
0034712675
-
pH jump studies of the folding of the multidomain ribosomal protein L9: The structural organization of the N-terminal domain does not affect the anomalously slow folding of the c-terminal domain
-
Sato, S., Luisi, D. L., and Raleigh, D. P. (2000) pH jump studies of the folding of the multidomain ribosomal protein L9: the structural organization of the N-terminal domain does not affect the anomalously slow folding of the c-terminal domain, Biochemistry 39, 4955-4962.
-
(2000)
Biochemistry
, vol.39
, pp. 4955-4962
-
-
Sato, S.1
Luisi, D.L.2
Raleigh, D.P.3
-
8
-
-
0035812628
-
Folding of horse cytochrome c in the reduced state
-
Bhuyan, A. K., and Udgaonkar, J. B. (2001) Folding of horse cytochrome c in the reduced state, J. Mol. Biol 312, 1135-1160.
-
(2001)
J. Mol. Biol
, vol.312
, pp. 1135-1160
-
-
Bhuyan, A.K.1
Udgaonkar, J.B.2
-
9
-
-
0028402689
-
The barriers in protein folding
-
Sosnick, T. R., Mayne, L., Miller, R., and Englander, S. W. (1994) The barriers in protein folding, Nat. Struct. Biol. 1, 149-156.
-
(1994)
Nat. Struct. Biol.
, vol.1
, pp. 149-156
-
-
Sosnick, T.R.1
Mayne, L.2
Miller, R.3
Englander, S.W.4
-
10
-
-
0029940033
-
Molecular collapse: The rate-limiting step in two-state cytochrome c folding
-
Sosnick, T. R., Mayne, L., and Englander, S. W. (1996) Molecular collapse: The rate-limiting step in two-state cytochrome c folding, Proteins 24, 413-426.
-
(1996)
Proteins
, vol.24
, pp. 413-426
-
-
Sosnick, T.R.1
Mayne, L.2
Englander, S.W.3
-
11
-
-
0028963362
-
Toward an outline of the topography of a realistic protein-folding funnel
-
Onuchic, J. N., Wolynes, P. G., Luthey-Schulten, Z., and Socci, N. D. (1995) Toward an outline of the topography of a realistic protein-folding funnel, Proc. Natl. Acad. Sci. U.S.A. 92, 3626-3630.
-
(1995)
Proc. Natl. Acad. Sci. U.S.A.
, vol.92
, pp. 3626-3630
-
-
Onuchic, J.N.1
Wolynes, P.G.2
Luthey-Schulten, Z.3
Socci, N.D.4
-
12
-
-
1842298212
-
From Levinthal to pathways to funnels
-
Dill, K. A., and Chan, H. S. (1997) From Levinthal to pathways to funnels, Nat. Struct. Biol. 4, 10-19.
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 10-19
-
-
Dill, K.A.1
Chan, H.S.2
-
13
-
-
0030628825
-
Theory of protein folding: The energy landscape perspective
-
Onuchic, J. N., Luthey-Schulten, Z., and Wolynes, P. G. (1997) Theory of protein folding: the energy landscape perspective, Annu. Rev. Phys. Chem. 48, 545-600.
-
(1997)
Annu. Rev. Phys. Chem.
, vol.48
, pp. 545-600
-
-
Onuchic, J.N.1
Luthey-Schulten, Z.2
Wolynes, P.G.3
-
14
-
-
0032147243
-
Protein folding mechanisms and the multidimensional folding funnel
-
Socci, N. D., Onuchic, J. N., and Wolynes, P. G. (1998) Protein folding mechanisms and the multidimensional folding funnel, Proteins 32, 136-158.
-
(1998)
Proteins
, vol.32
, pp. 136-158
-
-
Socci, N.D.1
Onuchic, J.N.2
Wolynes, P.G.3
-
17
-
-
0029249945
-
The nature of protein folding pathways: The classical versus the new view
-
Baldwin, R. L. (1995) The nature of protein folding pathways: the classical versus the new view, J. Biomol. NMR 5, 103-109.
-
(1995)
J. Biomol. NMR
, vol.5
, pp. 103-109
-
-
Baldwin, R.L.1
-
18
-
-
0028947257
-
Funnels, pathways and the energy landscape of protein folding: A synthesis
-
Bryngelson, J. D., Onuchic, J. N., Socci, N. D., and Wolynes, P. G. (1995) Funnels, pathways and the energy landscape of protein folding: a synthesis, Proteins 21, 167-195.
-
(1995)
Proteins
, vol.21
, pp. 167-195
-
-
Bryngelson, J.D.1
Onuchic, J.N.2
Socci, N.D.3
Wolynes, P.G.4
-
19
-
-
0030322669
-
Protein folding funnels: The nature of the transition state ensemble
-
Onuchic, J. N., Socci, N. D., Luthey-Schulten, Z., and Wolynes, P. G. (1996) Protein folding funnels: the nature of the transition state ensemble, Folding Des. 1, 441-450.
-
(1996)
Folding Des.
, vol.1
, pp. 441-450
-
-
Onuchic, J.N.1
Socci, N.D.2
Luthey-Schulten, Z.3
Wolynes, P.G.4
-
20
-
-
0029643523
-
Protein folding intermediates: Native state hydrogen exchange
-
Bai, Y., Sosnick, T. R., Mayne, L., and Englander, S. W. (1995) Protein folding intermediates: native state hydrogen exchange, Science 269, 192-197.
-
(1995)
Science
, vol.269
, pp. 192-197
-
-
Bai, Y.1
Sosnick, T.R.2
Mayne, L.3
Englander, S.W.4
-
21
-
-
0035793103
-
An amino acid code for protein folding
-
Rumbley, J., Hoang, L., Mayne, L., and Englander, S. W. (2001) An amino acid code for protein folding, Proc. Natl. Acad. Sci. U.S.A. 98, 105-112.
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 105-112
-
-
Rumbley, J.1
Hoang, L.2
Mayne, L.3
Englander, S.W.4
-
22
-
-
0037126070
-
Cytochrome c folding pathway: Kinetic native-state hydrogen exchange
-
Hoang, L., Bédard, S., Krishna, M. M. G., Lin, Y., and Englander, S. W. (2002) Cytochrome c folding pathway: kinetic native-state hydrogen exchange, Proc. Natl. Acad. Sci. U.S.A. 99, 12173-12178.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 12173-12178
-
-
Hoang, L.1
Bédard, S.2
Krishna, M.M.G.3
Lin, Y.4
Englander, S.W.5
-
23
-
-
0038786579
-
Cooperative omega loops in cytochrome c: Role in folding and function
-
Krishna, M. M. G., Lin, Y., Rumbley, J. N., and Englander, S. W. (2003) Cooperative omega loops in cytochrome c: role in folding and function, J. Mol. Biol. 331, 29-36.
-
(2003)
J. Mol. Biol.
, vol.331
, pp. 29-36
-
-
Krishna, M.M.G.1
Lin, Y.2
Rumbley, J.N.3
Englander, S.W.4
-
24
-
-
0037215268
-
The topomer search model: A simple, quantitative theory of two-state protein folding kinetics
-
Makarov, D. E., and Plaxco, K. W. (2003) The topomer search model: a simple, quantitative theory of two-state protein folding kinetics, Protein Sci. 12, 17-26.
-
(2003)
Protein Sci.
, vol.12
, pp. 17-26
-
-
Makarov, D.E.1
Plaxco, K.W.2
-
25
-
-
1442277673
-
Folding barrier in horse cytochrome c: Support for a classical folding pathway
-
Prabhu, N. P., Kumar, R., and Bhuyan, A. K. (2004) Folding barrier in horse cytochrome c: support for a classical folding pathway, J. Mol. Biol. 337, 195-208.
-
(2004)
J. Mol. Biol.
, vol.337
, pp. 195-208
-
-
Prabhu, N.P.1
Kumar, R.2
Bhuyan, A.K.3
-
26
-
-
14344267020
-
Two-state folding of horse ferrocytochrome c: Analyses of linear free energy relationship, chevron curvature, and stopped-flow burst relaxation kinetics
-
Kumar, R., and Bhuyan, A. K. (2005) Two-state folding of horse ferrocytochrome c: analyses of linear free energy relationship, chevron curvature, and stopped-flow burst relaxation kinetics, Biochemistry 44, xxx-xxx.
-
(2005)
Biochemistry
, vol.44
-
-
Kumar, R.1
Bhuyan, A.K.2
-
27
-
-
0030750236
-
High-energy channeling in protein folding
-
Silow, M., and Oliveberg, M. (1997) High-energy channeling in protein folding, Biochemistry, 36, 7633-7637.
-
(1997)
Biochemistry
, vol.36
, pp. 7633-7637
-
-
Silow, M.1
Oliveberg, M.2
-
28
-
-
0043237588
-
Dynamics of unfolded polypeptide chains as model for the earliest steps in protein folding
-
Krieger, F., Fierz, B., Bieri, O., Drewello, M., and Kiefhaber, T. (2003) Dynamics of unfolded polypeptide chains as model for the earliest steps in protein folding, J. Mol. Biol. 332, 265-274.
-
(2003)
J. Mol. Biol.
, vol.332
, pp. 265-274
-
-
Krieger, F.1
Fierz, B.2
Bieri, O.3
Drewello, M.4
Kiefhaber, T.5
-
29
-
-
0023041667
-
Evidence for identity between the equilibrium unfolding intermediate and a transient folding intermediate: A comparative study of the folding reactions of α-lactalbumin and lysozyme
-
Ikeguchi, M., Kuwajima, K., Mitani, M., and Sugai, S. (1986) Evidence for identity between the equilibrium unfolding intermediate and a transient folding intermediate: a comparative study of the folding reactions of α-lactalbumin and lysozyme, Biochemistry 25, 6965-6972.
-
(1986)
Biochemistry
, vol.25
, pp. 6965-6972
-
-
Ikeguchi, M.1
Kuwajima, K.2
Mitani, M.3
Sugai, S.4
-
30
-
-
0027234766
-
Engineering of stable and fast-folding sequences of model proteins
-
Shakhnovich, E. I., and Gutin, A. M. (1993) Engineering of stable and fast-folding sequences of model proteins, Proc. Natl. Acad. Sci. U.S.A. 90, 7195-7199.
-
(1993)
Proc. Natl. Acad. Sci. U.S.A.
, vol.90
, pp. 7195-7199
-
-
Shakhnovich, E.I.1
Gutin, A.M.2
-
31
-
-
0007725036
-
Folding kinetics of protein-like heteropolymer
-
Socci, N. D., and Onuchic, J. N. (1994) Folding kinetics of protein-like heteropolymer, J. Chem. Phys. 101, 1519-1528.
-
(1994)
J. Chem. Phys.
, vol.101
, pp. 1519-1528
-
-
Socci, N.D.1
Onuchic, J.N.2
-
32
-
-
0028924552
-
Navigating the folding routes
-
Wolynes, P. G., Onuchic, J. N., and Thirumalai, D. (1995) Navigating the folding routes, Science 267, 1619-1620.
-
(1995)
Science
, vol.267
, pp. 1619-1620
-
-
Wolynes, P.G.1
Onuchic, J.N.2
Thirumalai, D.3
-
33
-
-
0031059496
-
Theoretical studies of protein-folding thermodynamics and kinetics
-
Shakhnovich, E. I. (1997) Theoretical studies of protein-folding thermodynamics and kinetics, Curr. Opin. Struct. Biol. 7, 29-40.
-
(1997)
Curr. Opin. Struct. Biol.
, vol.7
, pp. 29-40
-
-
Shakhnovich, E.I.1
-
34
-
-
0030844583
-
Ultrafast signals in protein folding and the polypeptide contracted state
-
Sosnick, T. R., Shtilerman, M. D., Mayne, L., and Englander, S. W. (1997) Ultrafast signals in protein folding and the polypeptide contracted state, Proc. Natl. Acad. Sci. USA, 94, 8545-8550.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 8545-8550
-
-
Sosnick, T.R.1
Shtilerman, M.D.2
Mayne, L.3
Englander, S.W.4
-
35
-
-
1842609484
-
Early collapse is not an obligate step in protein folding
-
Jacob, J., Krantz, B., Dothager, R. S., Thiyagarajan, P., and Sosnick, T. R. (2004) Early collapse is not an obligate step in protein folding, J. Mol. Biol. 338, 369-382.
-
(2004)
J. Mol. Biol.
, vol.338
, pp. 369-382
-
-
Jacob, J.1
Krantz, B.2
Dothager, R.S.3
Thiyagarajan, P.4
Sosnick, T.R.5
-
36
-
-
0347284262
-
Rapid collapse precedes the fast two-state folding of the cold shock protein
-
Magg, C., and Schmid, F. X. (2004) Rapid collapse precedes the fast two-state folding of the cold shock protein, J. Mol. Biol. 335, 1309-1323.
-
(2004)
J. Mol. Biol.
, vol.335
, pp. 1309-1323
-
-
Magg, C.1
Schmid, F.X.2
-
37
-
-
0032502839
-
Contact order, transition state placement and the refolding rates of single domain proteins
-
Plaxco, K. W., Simons, K. T., and Baker, D. (1998) Contact order, transition state placement and the refolding rates of single domain proteins, J. Mol. Biol. 277, 985-994.
-
(1998)
J. Mol. Biol.
, vol.277
, pp. 985-994
-
-
Plaxco, K.W.1
Simons, K.T.2
Baker, D.3
-
38
-
-
0034604105
-
A surprising simplicity to protein folding
-
Baker, D. (2000) A surprising simplicity to protein folding, Nature 405, 39-42.
-
(2000)
Nature
, vol.405
, pp. 39-42
-
-
Baker, D.1
-
39
-
-
0034687123
-
Topology, stability, sequence, and length: Defining the determinants of two-state protein folding kinetics
-
Plaxco, K. W., Simons, K. T., Ruczinski, I., and Baker, D. (2000) Topology, stability, sequence, and length: defining the determinants of two-state protein folding kinetics, Biochemistry 39, 1177-11183.
-
(2000)
Biochemistry
, vol.39
, pp. 1177-11183
-
-
Plaxco, K.W.1
Simons, K.T.2
Ruczinski, I.3
Baker, D.4
-
40
-
-
1942473645
-
Critical nucleation size in the folding of small apparently two-state proteins
-
Bai, Y., Zhou, H., and Zhou, Y. (2004) Critical nucleation size in the folding of small apparently two-state proteins, Protein Sci. 13, 1173-1181.
-
(2004)
Protein Sci.
, vol.13
, pp. 1173-1181
-
-
Bai, Y.1
Zhou, H.2
Zhou, Y.3
-
41
-
-
0029155772
-
Impact of local and nonlocal interactions on thermodynamics and kinetics of protein folding
-
Abkevich, A. I., Gutin, A. M., and Shakhnovich, E. I. (1995) Impact of local and nonlocal interactions on thermodynamics and kinetics of protein folding, J. Mol. Biol. 252, 460-471.
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 460-471
-
-
Abkevich, A.I.1
Gutin, A.M.2
Shakhnovich, E.I.3
-
42
-
-
0032147191
-
Stopped-flow NMR measurement of hydrogen exchange rates in reduced horse cytochrome c under strongly destabilizing conditions
-
Bhuyan, A. K., and Udgaonkar, J. B. (1998) Stopped-flow NMR measurement of hydrogen exchange rates in reduced horse cytochrome c under strongly destabilizing conditions, Proteins 32, 241-247.
-
(1998)
Proteins
, vol.32
, pp. 241-247
-
-
Bhuyan, A.K.1
Udgaonkar, J.B.2
-
43
-
-
0031662891
-
Evidence for an unfolding and refolding pathway in cytochrome c
-
Xu, Y., Mayne, L. C., and Englander, S. W. (1998) Evidence for an unfolding and refolding pathway in cytochrome c, Nat. Struct. Biol. 5, 774-778.
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 774-778
-
-
Xu, Y.1
Mayne, L.C.2
Englander, S.W.3
|