-
1
-
-
0029643523
-
Protein folding intermediates: Native-state hydrogen exchange
-
Bai, Y., Sosnick, T. R., Mayne, L., and Englander, S. W. (1995) Protein folding intermediates: Native-state hydrogen exchange. Science 269, 192-197.
-
(1995)
Science
, vol.269
, pp. 192-197
-
-
Bai, Y.1
Sosnick, T.R.2
Mayne, L.3
Englander, S.W.4
-
2
-
-
0038786579
-
Cooperative omega loops in cytochrome c: Role in folding and function
-
Krishna, M. M. G., Lin, Y., Rumbley, J. N., and Englander, S. W. (2003) Cooperative omega loops in cytochrome c: Role in folding and function, J. Mol. Biol. 331, 29-36.
-
(2003)
J. Mol. Biol.
, vol.331
, pp. 29-36
-
-
Krishna, M.M.G.1
Lin, Y.2
Rumbley, J.N.3
Englander, S.W.4
-
3
-
-
0026077448
-
Enhanced thermodynamic stabilities of yeast iso-1-cytochromes c with amino acid replacements at positions 52 and 102
-
Hickey, D. R., Berghuis, A. M., Lafond, G., Jaeger, J. A., Cardillo, T. S., McLendon, D., Das, G., Sherman, F., Brayer, G. D., and McLendon, G. (1991) Enhanced thermodynamic stabilities of yeast iso-1-cytochromes c with amino acid replacements at positions 52 and 102, J. Biol. Chem. 266, 11686-11694.
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 11686-11694
-
-
Hickey, D.R.1
Berghuis, A.M.2
Lafond, G.3
Jaeger, J.A.4
Cardillo, T.S.5
McLendon, D.6
Das, G.7
Sherman, F.8
Brayer, G.D.9
McLendon, G.10
-
4
-
-
0029039960
-
Stabilizing amino acid replacements at position 52 in yeast iso-1-cytochromes c: In vivo and in vitro effects
-
Linske-O'Connell, L. I., Sherman, F., and McLendon, G. (1995) Stabilizing amino acid replacements at position 52 in yeast iso-1-cytochromes c: In vivo and in vitro effects, Biochemistry 34, 7094-7102.
-
(1995)
Biochemistry
, vol.34
, pp. 7094-7102
-
-
Linske-O'Connell, L.I.1
Sherman, F.2
McLendon, G.3
-
5
-
-
10544228949
-
The role of a conserved water molecule in the redox-dependent thermal stability of iso-1-cytochrome c
-
Lett, C. M., Berghuis, A. M., Frey, H. E., Lepock, J. R., and Guillemette, J. G. (1996) The role of a conserved water molecule in the redox-dependent thermal stability of iso-1-cytochrome c, J. Biol. Chem. 271, 29088-29093.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 29088-29093
-
-
Lett, C.M.1
Berghuis, A.M.2
Frey, H.E.3
Lepock, J.R.4
Guillemette, J.G.5
-
6
-
-
0042820062
-
Evaluation of cooperative interactions between substructures of iso-1-cytochrome c using double mutant cycles
-
Wandschneider, E., Hammack, B. N., and Bowler, B. E. (2003) Evaluation of cooperative interactions between substructures of iso-1-cytochrome c using double mutant cycles, Biochemistry 42, 10659-10666.
-
(2003)
Biochemistry
, vol.42
, pp. 10659-10666
-
-
Wandschneider, E.1
Hammack, B.N.2
Bowler, B.E.3
-
7
-
-
0028220311
-
The role of a conserved internal water molecule and its associated hydrogen bond network in cytochrome c
-
Berghuis, A. M., Guillemette, J. G., McLendon, G., Sherman, F., Smith, M., and Brayer, G. D. (1994) The role of a conserved internal water molecule and its associated hydrogen bond network in cytochrome c, J. Mol. Biol. 236, 786-799.
-
(1994)
J. Mol. Biol.
, vol.236
, pp. 786-799
-
-
Berghuis, A.M.1
Guillemette, J.G.2
McLendon, G.3
Sherman, F.4
Smith, M.5
Brayer, G.D.6
-
8
-
-
0026608669
-
Oxidation state-dependent conformational changes in cytochrome c
-
Berghuis, A. M., and Brayer, G. D. (1992) Oxidation state-dependent conformational changes in cytochrome c, J. Mol. Biol. 223, 959-976.
-
(1992)
J. Mol. Biol.
, vol.223
, pp. 959-976
-
-
Berghuis, A.M.1
Brayer, G.D.2
-
9
-
-
0028300174
-
Mutation of tyrosine-67 to phenylalanine in cytochrome c significantly alters the local heme environment
-
Berghuis, A. M., Guillemette, J. G., Smith, M., and Brayer, G. D. (1994) Mutation of tyrosine-67 to phenylalanine in cytochrome c significantly alters the local heme environment, J. Mol. Biol. 235, 1326-1341.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 1326-1341
-
-
Berghuis, A.M.1
Guillemette, J.G.2
Smith, M.3
Brayer, G.D.4
-
10
-
-
0035923433
-
Energetics of side chain packing in staphylococcal nuclease assessed by systematic double mutant cycles
-
Chen, J., and Stites, W. E. (2001) Energetics of side chain packing in staphylococcal nuclease assessed by systematic double mutant cycles, Biochemistry 40, 14004-14011.
-
(2001)
Biochemistry
, vol.40
, pp. 14004-14011
-
-
Chen, J.1
Stites, W.E.2
-
11
-
-
0035923416
-
Higher-order packing interactions in triple and quadruple mutants of staphylococcal nuclease
-
Chen, J., and Stites, W. E. (2001) Higher-order packing interactions in triple and quadruple mutants of staphylococcal nuclease, Biochemistry 40, 14012-14019.
-
(2001)
Biochemistry
, vol.40
, pp. 14012-14019
-
-
Chen, J.1
Stites, W.E.2
-
12
-
-
0026587310
-
Cooperative interactions during protein folding
-
Horovitz, A., and Fersht, A. R. (1992) Cooperative interactions during protein folding, J. Mol. Biol. 224, 733-740.
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 733-740
-
-
Horovitz, A.1
Fersht, A.R.2
-
13
-
-
0035979801
-
Denatured state thermodynamics: Residual structure, chain stiffness, and scaling factors
-
Hammack, B. N., Smith, C. R., and Bowler, B. E. (2001) Denatured state thermodynamics: residual structure, chain stiffness, and scaling factors, J. Mol. Biol. 311, 1091-1104.
-
(2001)
J. Mol. Biol.
, vol.311
, pp. 1091-1104
-
-
Hammack, B.N.1
Smith, C.R.2
Bowler, B.E.3
-
14
-
-
0037031261
-
Effects of topology and excluded volume on protein denatured state conformational properties
-
Smith, C. R., Mateljevic, N., and Bowler, B. E. (2002) Effects of topology and excluded volume on protein denatured state conformational properties, Biochemistry 41, 10173-10181.
-
(2002)
Biochemistry
, vol.41
, pp. 10173-10181
-
-
Smith, C.R.1
Mateljevic, N.2
Bowler, B.E.3
-
15
-
-
0026601458
-
Site-directed mutagenesis on virtually any plasmid by eliminating a unique restriction site
-
Deng, W. P. D., and Nickoloff, J. A. (1992) Site-directed mutagenesis on virtually any plasmid by eliminating a unique restriction site, Anal. Biochem. 200, 81-88.
-
(1992)
Anal. Biochem.
, vol.200
, pp. 81-88
-
-
Deng, W.P.D.1
Nickoloff, J.A.2
-
16
-
-
0002038533
-
Site-directed replacement of the invariant lysine 73 of Saccharomyces cerevisiae iso-1-cytochrome c with all ribosomally encoded amino acids
-
Herrmann, L., Flatt, P., and Bowler, B. E. (1996) Site-directed replacement of the invariant lysine 73 of Saccharomyces cerevisiae iso-1-cytochrome c with all ribosomally encoded amino acids, Inorg. Chim. Acta 242, 97-103.
-
(1996)
Inorg. Chim. Acta
, vol.242
, pp. 97-103
-
-
Herrmann, L.1
Flatt, P.2
Bowler, B.E.3
-
17
-
-
0032488914
-
Cytochrome c folding traps are not due solely to histidine-heme ligation: Direct demonstration of a role for N-terminal amino group-heme Iigation
-
Hammack, B., Godbole, S., and Bowler, B. E. (1998) Cytochrome c folding traps are not due solely to histidine-heme ligation: Direct demonstration of a role for N-terminal amino group-heme Iigation, J. Mol. Biol. 275, 719-724.
-
(1998)
J. Mol. Biol.
, vol.275
, pp. 719-724
-
-
Hammack, B.1
Godbole, S.2
Bowler, B.E.3
-
18
-
-
0027383834
-
Patterns of nonadditivity between pairs of stability mutations in Staphylococcal nuclease
-
Green, S. M., and Shortle, D. (1993) Patterns of nonadditivity between pairs of stability mutations in Staphylococcal nuclease, Biochemistry 32, 10131-10139.
-
(1993)
Biochemistry
, vol.32
, pp. 10131-10139
-
-
Green, S.M.1
Shortle, D.2
-
19
-
-
2442498470
-
On evolutionary conservation of thermodynamic coupling in proteins
-
Aldrich, R. W., and Fodor, A. A. (2004) On evolutionary conservation of thermodynamic coupling in proteins, J. Biol. Chem. 279, 19046-19050.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 19046-19050
-
-
Aldrich, R.W.1
Fodor, A.A.2
-
20
-
-
0347719392
-
Local complexity of amino acid interactions in a protein core
-
Jain, R. K., and Ranganathan, R. (2004) Local complexity of amino acid interactions in a protein core. Proc. Natl. Acad. Sci. U.S.A. 101, 111-116.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 111-116
-
-
Jain, R.K.1
Ranganathan, R.2
-
21
-
-
0029785464
-
Potential use of additivity of mutational effects in simplifying protein engineering
-
Skinner, M. M., and Terwilliger, T. C. (1996) Potential use of additivity of mutational effects in simplifying protein engineering. Proc. Natl. Acad. Sci. U.S.A. 93, 10753-10757.
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 10753-10757
-
-
Skinner, M.M.1
Terwilliger, T.C.2
-
22
-
-
0023668221
-
Temperature-sensitive mutations of bacteriophage T4 lysozyme occur at sites with low mobility and low solvent accessibility in the folded protein
-
Alber, T., Dao-pin, S., Nye, J. A., Muchmore, D. C., and Matthews, B. W. (1987) Temperature-sensitive mutations of bacteriophage T4 lysozyme occur at sites with low mobility and low solvent accessibility in the folded protein, Biochemistry 26, 3754-3758.
-
(1987)
Biochemistry
, vol.26
, pp. 3754-3758
-
-
Alber, T.1
Dao-pin, S.2
Nye, J.A.3
Muchmore, D.C.4
Matthews, B.W.5
-
23
-
-
0020825328
-
The conformation of eukaryotic cytochrome c around residues 39, 57, 59, and 74
-
Robinson, M. N., Boswell, A. P., Huang, Z. X., Eley, C. G. S., and Moore, G. R. (1983) The conformation of eukaryotic cytochrome c around residues 39, 57, 59, and 74, Biochem. J. 213, 687-700.
-
(1983)
Biochem. J.
, vol.213
, pp. 687-700
-
-
Robinson, M.N.1
Boswell, A.P.2
Huang, Z.X.3
Eley, C.G.S.4
Moore, G.R.5
-
24
-
-
0034635341
-
Measuring denatured state energetics: Deviations from random coil behavior and implications for the folding of iso-1-cytochrome c
-
Godbole, S., Hammack, B., and Bowler, B. E. (2000) Measuring denatured state energetics: Deviations from random coil behavior and implications for the folding of iso-1-cytochrome c, J. Mol. Biol. 296, 217-228.
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 217-228
-
-
Godbole, S.1
Hammack, B.2
Bowler, B.E.3
-
25
-
-
0030967237
-
Thermal denaturation of iso-1-cytochrome c variants: Comparison with solvent denaturation
-
Herrmann, L. M., and Bowler, B. E. (1997) Thermal denaturation of iso-1-cytochrome c variants: Comparison with solvent denaturation, Protein Sci. 6, 657-665.
-
(1997)
Protein Sci.
, vol.6
, pp. 657-665
-
-
Herrmann, L.M.1
Bowler, B.E.2
-
26
-
-
0027935843
-
Stability of yeast iso-1-cytochrome c as a function of pH and temperature
-
Cohen, D. S., and Pielak, G. J. (1994) Stability of yeast iso-1-cytochrome c as a function of pH and temperature, Protein Sci. 3, 1253-1260.
-
(1994)
Protein Sci.
, vol.3
, pp. 1253-1260
-
-
Cohen, D.S.1
Pielak, G.J.2
-
27
-
-
0027000943
-
Introduction of a disulfide bond in cytochrome c stabilizes a compact denatured state
-
Betz, S. F., and Pielak, G. J. (1992) Introduction of a disulfide bond in cytochrome c stabilizes a compact denatured state, Biochemistry 31, 12337-12344.
-
(1992)
Biochemistry
, vol.31
, pp. 12337-12344
-
-
Betz, S.F.1
Pielak, G.J.2
-
28
-
-
0030748706
-
Solution structure of oxidized Saccharomyces cerevisiae iso-1-cytochrome c
-
Banci, L., Bertini, I., Bren, K. L., Gray, H. B., Sompornpisut, P., and Turano, P. (1997) Solution structure of oxidized Saccharomyces cerevisiae iso-1-cytochrome c, Biochemistry 36, 8992-9001.
-
(1997)
Biochemistry
, vol.36
, pp. 8992-9001
-
-
Banci, L.1
Bertini, I.2
Bren, K.L.3
Gray, H.B.4
Sompornpisut, P.5
Turano, P.6
-
29
-
-
0031955820
-
Mutagenesis of histidine 26 demonstrates the importance of loop-loop and loop-protein interactions for the function of iso-1-cytochrome c
-
Fetrow, J. S., Dreher, U., Wiland, D. J., Schaak, D. L., and Boose, T. L. (1998) Mutagenesis of histidine 26 demonstrates the importance of loop-loop and loop-protein interactions for the function of iso-1-cytochrome c, Protein Sci. 7, 994-1005.
-
(1998)
Protein Sci.
, vol.7
, pp. 994-1005
-
-
Fetrow, J.S.1
Dreher, U.2
Wiland, D.J.3
Schaak, D.L.4
Boose, T.L.5
-
30
-
-
0033954256
-
The protein data bank
-
Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N., and Bourne, P. E. (2000) The protein data bank, Nuc. Acids Res. 28, 235-242.
-
(2000)
Nuc. Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
31
-
-
0033528743
-
15N]-labeled oxidized and reduced iso-1-cytochrome c
-
15N]-labeled oxidized and reduced iso-1-cytochrome c, Biochemistry 38, 4493-4503.
-
(1999)
Biochemistry
, vol.38
, pp. 4493-4503
-
-
Baxter, S.M.1
Fetrow, J.S.2
-
32
-
-
0031745764
-
Site-specific analysis of mutational effects in proteins
-
Di Cera, E. (1998) Site-specific analysis of mutational effects in proteins, Adv. Protein Chem. 51, 59-119.
-
(1998)
Adv. Protein Chem.
, vol.51
, pp. 59-119
-
-
Di Cera, E.1
-
33
-
-
2342544028
-
Conformational properties of the iso-1-cytochrome c denatured state: Dependence on guanidine hydrochloride concentration
-
Wandschneider, E., and Bowler, B. E. (2004) Conformational properties of the iso-1-cytochrome c denatured state: Dependence on guanidine hydrochloride concentration, J. Mol. Biol. 339, 185-197.
-
(2004)
J. Mol. Biol.
, vol.339
, pp. 185-197
-
-
Wandschneider, E.1
Bowler, B.E.2
|