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Volumn 5, Issue 3, 1998, Pages 517-530

A polyhedral approach to RNA sequence structure alignment

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; BASE PAIRING; COMPUTER PROGRAM; DATA BASE; GENETIC PROCEDURES; HYDROGEN BOND; PREDICTION; PRIORITY JOURNAL; RNA SEQUENCE; RNA STRUCTURE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STATISTICAL MODEL;

EID: 0031750905     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/cmb.1998.5.517     Document Type: Article
Times cited : (39)

References (16)
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    • Z. Galil and E. Ukkonen, eds., Springer, Espoo, Finland
    • Bafna, V., Muthukrishnan, S., and Ravi, R. 1995. Computing similarity between RNA strings. In Z. Galil and E. Ukkonen, eds., Combinatorial Pattern Matching 1-16, Springer, Espoo, Finland.
    • (1995) Combinatorial Pattern Matching , pp. 1-16
    • Bafna, V.1    Muthukrishnan, S.2    Ravi, R.3
  • 3
    • 0027982394 scopus 로고
    • RNAlign program: Alignment of RNA sequences using both primary and secondary structures
    • Corpet, F., and Michot, B. 1994. RNAlign program: Alignment of RNA sequences using both primary and secondary structures. CABIOS 10(4), 389-399.
    • (1994) CABIOS , vol.10 , Issue.4 , pp. 389-399
    • Corpet, F.1    Michot, B.2
  • 5
    • 0028272315 scopus 로고
    • RNA sequence analysis using covariance models
    • Eddy, S.R., and Durbin, R. 1994. RNA sequence analysis using covariance models. Nucleic Acids Research 22(11), 2079-2088.
    • (1994) Nucleic Acids Research , vol.22 , Issue.11 , pp. 2079-2088
    • Eddy, S.R.1    Durbin, R.2
  • 6
    • 0030812919 scopus 로고    scopus 로고
    • Finding the most significant common sequence and structure motifs in a set of RNA sequences
    • Gorodkin, J., Heyer, L.J., and Stormo, G.D. 1997. Finding the most significant common sequence and structure motifs in a set of RNA sequences. Nucleic Acids Research 25, 3724-3732.
    • (1997) Nucleic Acids Research , vol.25 , pp. 3724-3732
    • Gorodkin, J.1    Heyer, L.J.2    Stormo, G.D.3
  • 7
    • 4243258421 scopus 로고    scopus 로고
    • The design of the branch and cut system ABACUS
    • Institut für Informatik, Universität zu Köln
    • Jünger, M., and Thienel, S. 1997. The design of the branch and cut system ABACUS. Technical Report No. 97.260, Institut für Informatik, Universität zu Köln.
    • (1997) Technical Report No. 97.260
    • Jünger, M.1    Thienel, S.2
  • 9
    • 0014688034 scopus 로고
    • Detailed molecular model for transfer ribonucleic acid
    • Levitt, M. 1969. Detailed molecular model for transfer ribonucleic acid. Nature 224, 759-763.
    • (1969) Nature , vol.224 , pp. 759-763
    • Levitt, M.1
  • 10
    • 0029184961 scopus 로고
    • LEDA, a platform for combinatorial and geometric computing
    • Mehlhorn, K., and Näher, S. 1995. LEDA, a platform for combinatorial and geometric computing. Communications of the ACM 38(1), 96-102.
    • (1995) Communications of the ACM , vol.38 , Issue.1 , pp. 96-102
    • Mehlhorn, K.1    Näher, S.2
  • 11
    • 0016028005 scopus 로고
    • Properties of vertex packing and independence system polyhedra
    • Nemhauser, G., and Trotter, L. 1973. Properties of vertex packing and independence system polyhedra. Mathematical Programming 6, 48-61.
    • (1973) Mathematical Programming , vol.6 , pp. 48-61
    • Nemhauser, G.1    Trotter, L.2
  • 14
    • 0022146059 scopus 로고
    • Simultaneous solution of the RNA folding, alignment and protosequence problems
    • Sankoff, D. 1985. Simultaneous solution of the RNA folding, alignment and protosequence problems. SIAM Journal on Applied Mathematics 45(5), 810-825.
    • (1985) SIAM Journal on Applied Mathematics , vol.45 , Issue.5 , pp. 810-825
    • Sankoff, D.1
  • 16
    • 0039080150 scopus 로고
    • Consensus methods for folding single-stranded nucleic acids
    • CRC Press, Boca Raton, FL
    • Waterman, M.S. 1989. Consensus methods for folding single-stranded nucleic acids. In Mathematical Methods for DNA Sequences 185-224, CRC Press, Boca Raton, FL.
    • (1989) Mathematical Methods for DNA Sequences , pp. 185-224
    • Waterman, M.S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.